Incidental Mutation 'R0026:Yipf1'
Institutional Source Beutler Lab
Gene Symbol Yipf1
Ensembl Gene ENSMUSG00000057375
Gene NameYip1 domain family, member 1
MMRRC Submission 038321-MU
Accession Numbers

Ncbi RefSeq: NM_145550.3, NM_001205156.1; MGI:1915532

Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R0026 (G1)
Quality Score
Status Validated
Chromosomal Location107314363-107359823 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) T to A at 107345160 bp
Amino Acid Change Leucine to Stop codon at position 240 (L240*)
Ref Sequence ENSEMBL: ENSMUSP00000115626 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000075693] [ENSMUST00000128284] [ENSMUST00000139527]
Predicted Effect probably null
Transcript: ENSMUST00000075693
AA Change: L267*
SMART Domains Protein: ENSMUSP00000075113
Gene: ENSMUSG00000057375
AA Change: L267*

Pfam:Yip1 86 274 6.6e-25 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000124254
Predicted Effect probably benign
Transcript: ENSMUST00000128284
SMART Domains Protein: ENSMUSP00000114898
Gene: ENSMUSG00000057375

Pfam:Yip1 86 244 8.1e-23 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000137391
Predicted Effect probably null
Transcript: ENSMUST00000139527
AA Change: L240*
SMART Domains Protein: ENSMUSP00000115626
Gene: ENSMUSG00000057375
AA Change: L240*

Pfam:Yip1 62 247 3.6e-24 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000143106
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146829
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156265
Meta Mutation Damage Score 0.9755 question?
Coding Region Coverage
  • 1x: 78.7%
  • 3x: 68.7%
  • 10x: 42.4%
  • 20x: 22.6%
Validation Efficiency 96% (75/78)
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit no detectable phenotypic abnormalities. [provided by MGI curators]
Allele List at MGI

All alleles(8) : Targeted(2) Gene trapped(6)

Other mutations in this stock
Total: 40 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4931408C20Rik T A 1: 26,683,369 D910V probably benign Het
Abca16 C T 7: 120,477,923 probably benign Het
Acot10 G A 15: 20,666,236 L140F probably benign Het
Asph A C 4: 9,601,361 S129A probably damaging Het
Atrn T C 2: 130,957,920 Y406H probably damaging Het
B4galt3 C T 1: 171,274,261 probably benign Het
BC016579 T C 16: 45,640,367 T113A probably benign Het
Bmpr1b A G 3: 141,870,733 L113P probably benign Het
Casq1 T C 1: 172,219,400 probably benign Het
Ccdc187 T C 2: 26,281,353 D371G probably benign Het
Clstn1 G A 4: 149,634,796 V361M probably damaging Het
Cyp4b1 C T 4: 115,647,521 G56D possibly damaging Het
Dock5 C A 14: 67,846,081 E126D probably benign Het
Exph5 A T 9: 53,376,479 D1620V probably benign Het
Fancd2os G T 6: 113,597,691 T118N probably damaging Het
Fli1 A G 9: 32,476,584 Y37H probably damaging Het
Gm17521 G A X: 123,029,542 S43L probably benign Het
Gnb3 A G 6: 124,837,417 V135A probably benign Het
Ibtk A G 9: 85,690,303 V1278A probably benign Het
Ighv1-58 G A 12: 115,312,287 T77I probably benign Het
Lgsn T A 1: 31,203,443 V202D probably damaging Het
Madd A G 2: 91,175,708 F381L possibly damaging Het
Ntf3 T A 6: 126,101,805 N246I probably damaging Het
Pds5b G A 5: 150,749,830 probably benign Het
Ppp3cb C T 14: 20,531,768 V60I probably benign Het
Prc1 T C 7: 80,311,061 probably benign Het
Prpf31 T A 7: 3,639,668 N413K probably benign Het
Rapgef5 T C 12: 117,689,161 S307P probably benign Het
Rbfox2 T C 15: 77,084,157 T435A possibly damaging Het
Senp1 T C 15: 98,076,668 R88G probably damaging Het
Slc35b1 T C 11: 95,390,642 S294P probably benign Het
Slc44a5 G A 3: 154,240,270 probably benign Het
Taf1d T A 9: 15,308,648 S64R probably damaging Het
Trim6 T A 7: 104,225,809 probably null Het
Ttn T C 2: 76,769,190 T19186A probably damaging Het
Uchl4 A T 9: 64,235,371 probably null Het
Usp32 T C 11: 85,032,074 S673G possibly damaging Het
Utrn T C 10: 12,726,196 probably benign Het
Vps13b T C 15: 35,923,301 I3774T possibly damaging Het
Vwa3a A G 7: 120,780,211 Q513R probably damaging Het
Other mutations in Yipf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02957:Yipf1 APN 4 107336150 missense probably damaging 0.99
R0026:Yipf1 UTSW 4 107345160 nonsense probably null
R0521:Yipf1 UTSW 4 107336190 missense probably benign 0.02
R4609:Yipf1 UTSW 4 107344683 splice site probably null
R4781:Yipf1 UTSW 4 107336158 missense probably benign 0.11
R4790:Yipf1 UTSW 4 107336199 splice site probably null
R4881:Yipf1 UTSW 4 107345091 missense possibly damaging 0.93
R5655:Yipf1 UTSW 4 107345157 missense probably damaging 0.99
R7365:Yipf1 UTSW 4 107350541 splice site probably null
R7633:Yipf1 UTSW 4 107318996 missense probably benign
Z1176:Yipf1 UTSW 4 107345138 missense probably damaging 1.00
Posted On2012-12-12