Mutagenetix > Incidental Mutation

Incidental Mutation 'R2127:Zfp408'

227588

Institutional Source

Beutler Lab

Gene Symbol

Zfp408

Ensembl Gene

ENSMUSG00000075040

Gene Name

zinc finger protein 408

Synonyms

LOC381410

MMRRC Submission

040130-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2127 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

91474014-91480136 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 91475519 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 545 (E545G)

Ref Sequence

ENSEMBL: ENSMUSP00000106965 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000099714] [ENSMUST00000111329] [ENSMUST00000111331] [ENSMUST00000111333] [ENSMUST00000145582]

AlphaFold

H7BX78

Predicted Effect

possibly damaging
Transcript: ENSMUST00000099714
AA Change: E645G

PolyPhen 2 Score 0.608 (Sensitivity: 0.87; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000097301
Gene: ENSMUSG00000075040
AA Change: E645G

Domain	Start	End	E-Value	Type
ZnF_C2H2	344	366	7.05e-1	SMART
ZnF_C2H2	372	394	1.67e-2	SMART
ZnF_C2H2	400	422	2.24e-3	SMART
ZnF_C2H2	428	450	8.6e-5	SMART
ZnF_C2H2	459	481	5.9e-3	SMART
ZnF_C2H2	487	509	4.87e-4	SMART
ZnF_C2H2	515	537	2.95e-3	SMART
ZnF_C2H2	542	564	2.2e-2	SMART
ZnF_C2H2	570	592	1.69e-3	SMART
ZnF_C2H2	598	620	3.89e-3	SMART
low complexity region	625	638	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111329

SMART Domains

Protein: ENSMUSP00000106961
Gene: ENSMUSG00000027247

Domain	Start	End	E-Value	Type
low complexity region	4	18	N/A	INTRINSIC
low complexity region	42	52	N/A	INTRINSIC
SEC14	64	215	5.08e-25	SMART
low complexity region	224	238	N/A	INTRINSIC
RhoGAP	257	428	1.06e-61	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111331

SMART Domains

Protein: ENSMUSP00000106963
Gene: ENSMUSG00000027247

Domain	Start	End	E-Value	Type
low complexity region	44	58	N/A	INTRINSIC
low complexity region	82	92	N/A	INTRINSIC
SEC14	104	255	5.08e-25	SMART
low complexity region	264	278	N/A	INTRINSIC
RhoGAP	297	468	1.06e-61	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000111333
AA Change: E545G

PolyPhen 2 Score 0.975 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000106965
Gene: ENSMUSG00000075040
AA Change: E545G

Domain	Start	End	E-Value	Type
ZnF_C2H2	244	266	7.05e-1	SMART
ZnF_C2H2	272	294	1.67e-2	SMART
ZnF_C2H2	300	322	2.24e-3	SMART
ZnF_C2H2	328	350	8.6e-5	SMART
ZnF_C2H2	359	381	5.9e-3	SMART
ZnF_C2H2	387	409	4.87e-4	SMART
ZnF_C2H2	415	437	2.95e-3	SMART
ZnF_C2H2	442	464	2.2e-2	SMART
ZnF_C2H2	470	492	1.69e-3	SMART
ZnF_C2H2	498	520	3.89e-3	SMART
low complexity region	525	538	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000117988

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127702

Predicted Effect

probably benign
Transcript: ENSMUST00000145582

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152769

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000155045

Meta Mutation Damage Score

0.1664

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.5%
20x: 95.9%

Validation Efficiency

98% (93/95)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains ten tandem zinc fingers and an N-terminal SET domain, so it is likely a DNA binding protein that interacts with other proteins. In adults, the encoded protein is expressed most highly in retina. Consequently, defects in this gene have been associated with familial exudative vitreoretinopathy (FEVR) and retinitis pigmentosa (RP). [provided by RefSeq, Dec 2016]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930449I24Rik	T	A	5: 146,441,752 (GRCm39)	S300T	possibly damaging	Het
A2ml1	A	C	6: 128,535,400 (GRCm39)	V770G	probably damaging	Het
Abca6	A	G	11: 110,110,475 (GRCm39)	I558T	probably benign	Het
Abhd17c	C	A	7: 83,759,870 (GRCm39)	G295W	probably damaging	Het
Actn3	G	A	19: 4,921,703 (GRCm39)	A159V	probably damaging	Het
Adgrv1	A	T	13: 81,705,199 (GRCm39)	F1537Y	probably damaging	Het
Agbl1	G	T	7: 76,069,628 (GRCm39)	V373F	possibly damaging	Het
Aldh1a1	A	T	19: 20,620,279 (GRCm39)	E485D	probably benign	Het
Amdhd2	A	G	17: 24,377,282 (GRCm39)		probably null	Het
Armc3	A	G	2: 19,206,622 (GRCm39)	D15G	probably damaging	Het
Atp2b2	A	G	6: 113,737,611 (GRCm39)	L921P	probably damaging	Het
Btbd16	A	G	7: 130,386,038 (GRCm39)	N88S	probably benign	Het
Capn10	T	A	1: 92,865,756 (GRCm39)	C77*	probably null	Het
Caskin1	T	C	17: 24,715,970 (GRCm39)		probably null	Het
Catsper4	T	C	4: 133,941,117 (GRCm39)	D254G	probably benign	Het
Catsperg1	T	C	7: 28,884,465 (GRCm39)	D958G	probably damaging	Het
Ccar2	T	G	14: 70,377,100 (GRCm39)	K787Q	probably benign	Het
Ccdc191	C	T	16: 43,728,998 (GRCm39)	T244I	probably benign	Het
Cd33	A	T	7: 43,179,699 (GRCm39)	L243Q	possibly damaging	Het
Cdc37	T	C	9: 21,061,143 (GRCm39)	Y4C	probably damaging	Het
Cenpe	T	G	3: 134,945,541 (GRCm39)	N1018K	probably benign	Het
Crocc	G	A	4: 140,744,407 (GRCm39)	R1830C	probably damaging	Het
Csmd1	T	C	8: 15,967,392 (GRCm39)	D3157G	probably damaging	Het
Dhx57	C	T	17: 80,580,477 (GRCm39)	V492M	probably damaging	Het
Dnah2	A	T	11: 69,349,011 (GRCm39)	I2486N	probably benign	Het
Dnhd1	C	T	7: 105,342,928 (GRCm39)	T1424I	possibly damaging	Het
Dsc3	C	T	18: 20,101,411 (GRCm39)	A661T	probably benign	Het
F930015N05Rik	A	G	11: 64,326,229 (GRCm39)		probably benign	Het
Fbxo34	C	A	14: 47,767,563 (GRCm39)	R308S	probably damaging	Het
Gm10608	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	9: 118,989,784 (GRCm39)		probably benign	Het
Gm11595	A	T	11: 99,663,327 (GRCm39)	C118S	unknown	Het
Gm9742	A	T	13: 8,085,011 (GRCm39)		noncoding transcript	Het
Gmeb2	G	A	2: 180,900,842 (GRCm39)	A185V	probably benign	Het
Gpr15	A	G	16: 58,538,618 (GRCm39)	V157A	possibly damaging	Het
Gpr3	C	T	4: 132,937,932 (GRCm39)	A247T	probably damaging	Het
Grin2b	A	C	6: 135,755,698 (GRCm39)	S539A	probably benign	Het
Hmbs	T	C	9: 44,252,004 (GRCm39)	T92A	probably benign	Het
Inpp4a	A	G	1: 37,406,000 (GRCm39)	M173V	probably benign	Het
Irx4	T	A	13: 73,413,595 (GRCm39)	S22T	probably benign	Het
Jph3	C	T	8: 122,511,881 (GRCm39)	A623V	probably benign	Het
Kif1b	G	A	4: 149,272,097 (GRCm39)	S1568L	possibly damaging	Het
Ksr1	G	A	11: 78,924,139 (GRCm39)	S361L	probably damaging	Het
Lyst	T	G	13: 13,809,847 (GRCm39)	Y506D	probably damaging	Het
Mctp1	A	G	13: 76,972,941 (GRCm39)	D648G	probably damaging	Het
Megf8	T	C	7: 25,064,007 (GRCm39)	S2788P	possibly damaging	Het
Mfsd2b	T	A	12: 4,917,659 (GRCm39)	Y129F	probably benign	Het
Mindy4	T	C	6: 55,195,250 (GRCm39)	S155P	probably benign	Het
Mospd4	A	G	18: 46,598,731 (GRCm39)		noncoding transcript	Het
Myo18b	A	T	5: 112,978,944 (GRCm39)	L1223Q	probably damaging	Het
Nckipsd	A	G	9: 108,688,932 (GRCm39)	T156A	probably benign	Het
Ndst1	G	A	18: 60,824,280 (GRCm39)	T799I	probably benign	Het
Npffr2	A	T	5: 89,715,924 (GRCm39)	I84F	probably damaging	Het
Nphp3	G	A	9: 103,885,442 (GRCm39)	V167M	probably damaging	Het
Nup107	C	A	10: 117,610,380 (GRCm39)	R354L	possibly damaging	Het
Olfml2a	T	C	2: 38,831,699 (GRCm39)	C93R	probably damaging	Het
Or12e10	A	G	2: 87,640,685 (GRCm39)	I174V	probably benign	Het
Or1e25	C	G	11: 73,493,631 (GRCm39)	S75C	possibly damaging	Het
Or5l14	A	T	2: 87,793,176 (GRCm39)	V20D	probably benign	Het
Pappa	T	A	4: 65,215,494 (GRCm39)	L1134M	probably damaging	Het
Plscr4	T	G	9: 92,370,683 (GRCm39)	F217V	possibly damaging	Het
Pnpla8	T	A	12: 44,354,840 (GRCm39)	Y667N	probably benign	Het
Polg	A	G	7: 79,114,676 (GRCm39)	L95P	probably damaging	Het
Psg20	T	G	7: 18,416,643 (GRCm39)	I158L	probably damaging	Het
Pwwp2a	A	G	11: 43,596,145 (GRCm39)	S437G	probably benign	Het
Rdx	A	G	9: 51,981,032 (GRCm39)	M305V	possibly damaging	Het
Rinl	A	G	7: 28,496,168 (GRCm39)	E383G	probably damaging	Het
Ror1	A	G	4: 100,299,290 (GRCm39)	M888V	probably benign	Het
Rps12	A	T	10: 23,662,776 (GRCm39)	I22K	possibly damaging	Het
Rtca	C	A	3: 116,291,323 (GRCm39)	R219L	possibly damaging	Het
Ryr2	G	A	13: 11,727,081 (GRCm39)	P2427S	probably damaging	Het
Slc10a6	A	G	5: 103,756,922 (GRCm39)	Y281H	probably benign	Het
Slc39a11	A	G	11: 113,260,629 (GRCm39)	S176P	probably benign	Het
Slfn10-ps	A	G	11: 82,921,168 (GRCm39)		noncoding transcript	Het
Spef2	T	C	15: 9,729,747 (GRCm39)	T124A	possibly damaging	Het
Sult2a4	G	T	7: 13,649,185 (GRCm39)	P207Q	probably damaging	Het
Tas1r3	G	A	4: 155,944,927 (GRCm39)	R765C	probably damaging	Het
Tcstv1a	T	C	13: 120,355,282 (GRCm39)	T117A	probably damaging	Het
Tha1	A	G	11: 117,760,600 (GRCm39)	V208A	probably damaging	Het
Tmbim4	T	A	10: 120,060,658 (GRCm39)	I215N	probably damaging	Het
Tmem202	T	A	9: 59,427,483 (GRCm39)	I122F	probably benign	Het
Tomm70a	T	C	16: 56,942,234 (GRCm39)	S4P	unknown	Het
Tpcn2	A	G	7: 144,827,712 (GRCm39)		probably benign	Het
Trim36	A	T	18: 46,345,404 (GRCm39)	F10I	probably benign	Het
Usp30	A	G	5: 114,249,224 (GRCm39)	E176G	probably damaging	Het
Usp8	T	G	2: 126,579,495 (GRCm39)		probably null	Het
Vmn1r32	T	A	6: 66,530,533 (GRCm39)	Y81F	probably benign	Het
Vps36	G	T	8: 22,708,305 (GRCm39)		probably null	Het
Wdr87-ps	T	C	7: 29,236,565 (GRCm39)		noncoding transcript	Het
Wnt3	A	G	11: 103,703,474 (GRCm39)	H319R	possibly damaging	Het
Zfp319	A	T	8: 96,050,391 (GRCm39)		probably benign	Het
Zfp799	C	T	17: 33,038,472 (GRCm39)	R598Q	possibly damaging	Het
Zfp831	T	C	2: 174,489,917 (GRCm39)	V1228A	probably benign	Het
Zfp938	T	C	10: 82,061,876 (GRCm39)	D248G	probably benign	Het

Other mutations in Zfp408

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01154:Zfp408	APN	2	91,478,351 (GRCm39)	splice site	probably benign
IGL02374:Zfp408	APN	2	91,476,156 (GRCm39)	missense	probably damaging	1.00
IGL03012:Zfp408	APN	2	91,478,153 (GRCm39)	missense	probably benign
Innuendo	UTSW	2	91,476,690 (GRCm39)	missense	probably benign	0.06
Slander	UTSW	2	91,478,194 (GRCm39)	splice site	probably benign
R0467:Zfp408	UTSW	2	91,475,882 (GRCm39)	missense	possibly damaging	0.86
R0981:Zfp408	UTSW	2	91,475,528 (GRCm39)	missense	probably benign	0.38
R1579:Zfp408	UTSW	2	91,476,473 (GRCm39)	missense	probably benign	0.05
R1673:Zfp408	UTSW	2	91,476,353 (GRCm39)	missense	probably damaging	0.97
R1935:Zfp408	UTSW	2	91,480,093 (GRCm39)	start codon destroyed	probably null	0.95
R2071:Zfp408	UTSW	2	91,476,363 (GRCm39)	missense	probably damaging	0.96
R2141:Zfp408	UTSW	2	91,478,194 (GRCm39)	splice site	probably benign
R3688:Zfp408	UTSW	2	91,476,777 (GRCm39)	missense	probably benign	0.00
R4681:Zfp408	UTSW	2	91,476,131 (GRCm39)	missense	probably damaging	1.00
R4782:Zfp408	UTSW	2	91,475,369 (GRCm39)	missense	possibly damaging	0.88
R4939:Zfp408	UTSW	2	91,475,450 (GRCm39)	missense	probably damaging	1.00
R5306:Zfp408	UTSW	2	91,476,690 (GRCm39)	missense	probably benign	0.06
R5344:Zfp408	UTSW	2	91,475,588 (GRCm39)	missense	probably benign	0.15
R6054:Zfp408	UTSW	2	91,479,636 (GRCm39)	missense	probably benign	0.00
R7985:Zfp408	UTSW	2	91,476,776 (GRCm39)	missense	probably benign
R8193:Zfp408	UTSW	2	91,475,361 (GRCm39)	missense	probably benign	0.00
R9075:Zfp408	UTSW	2	91,476,065 (GRCm39)	missense	possibly damaging	0.77
R9135:Zfp408	UTSW	2	91,475,528 (GRCm39)	missense	probably damaging	1.00
R9514:Zfp408	UTSW	2	91,478,368 (GRCm39)	missense	probably damaging	1.00
Z1176:Zfp408	UTSW	2	91,478,150 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- AGCTCTTGCAGGGGTAAAGG -3'
(R):5'- TTACACACTGGCCACCAAGTTG -3'

Sequencing Primer
(F):5'- CGTCAGGTGCCTGCTTCTG -3'
(R):5'- GCCACCAAGTTGCGCCG -3'

Posted On

2014-09-17