Incidental Mutation 'IGL02271:Stac3'
| ID |
287122 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Stac3
|
| Ensembl Gene |
ENSMUSG00000040287 |
| Gene Name |
SH3 and cysteine rich domain 3 |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL02271
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
10 |
| Chromosomal Location |
127337555-127344692 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 127339768 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 158
(D158G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000125124
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000035839]
[ENSMUST00000064793]
[ENSMUST00000077046]
[ENSMUST00000105249]
[ENSMUST00000105250]
[ENSMUST00000105251]
[ENSMUST00000160019]
[ENSMUST00000170336]
[ENSMUST00000166820]
[ENSMUST00000160610]
[ENSMUST00000169888]
|
| AlphaFold |
Q8BZ71 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000035839
AA Change: D158G
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000048148
Gene: ENSMUSG00000040287
AA Change: D158G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
35 |
46 |
N/A |
INTRINSIC |
|
low complexity region
|
65 |
81 |
N/A |
INTRINSIC |
|
C1
|
89 |
139 |
2.19e-7 |
SMART |
|
low complexity region
|
199 |
213 |
N/A |
INTRINSIC |
|
low complexity region
|
220 |
238 |
N/A |
INTRINSIC |
|
SH3
|
246 |
301 |
1.41e-16 |
SMART |
|
SH3
|
305 |
360 |
8.45e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000064793
|
| SMART Domains |
Protein: ENSMUSP00000069724
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
low complexity region
|
306 |
318 |
N/A |
INTRINSIC |
|
low complexity region
|
398 |
429 |
N/A |
INTRINSIC |
|
low complexity region
|
442 |
457 |
N/A |
INTRINSIC |
|
low complexity region
|
699 |
730 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000077046
|
| SMART Domains |
Protein: ENSMUSP00000076303
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
Pfam:SUZ
|
250 |
303 |
7.4e-14 |
PFAM |
|
low complexity region
|
338 |
350 |
N/A |
INTRINSIC |
|
low complexity region
|
430 |
461 |
N/A |
INTRINSIC |
|
low complexity region
|
474 |
499 |
N/A |
INTRINSIC |
|
low complexity region
|
744 |
775 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000105249
|
| SMART Domains |
Protein: ENSMUSP00000100884
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
Pfam:SUZ
|
250 |
303 |
5.4e-12 |
PFAM |
|
low complexity region
|
320 |
332 |
N/A |
INTRINSIC |
|
low complexity region
|
412 |
443 |
N/A |
INTRINSIC |
|
low complexity region
|
692 |
723 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000105250
|
| SMART Domains |
Protein: ENSMUSP00000100885
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
Pfam:SUZ
|
250 |
303 |
5.6e-12 |
PFAM |
|
low complexity region
|
320 |
332 |
N/A |
INTRINSIC |
|
low complexity region
|
412 |
443 |
N/A |
INTRINSIC |
|
low complexity region
|
456 |
481 |
N/A |
INTRINSIC |
|
low complexity region
|
726 |
757 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000105251
|
| SMART Domains |
Protein: ENSMUSP00000100886
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
Pfam:SUZ
|
250 |
303 |
5.6e-12 |
PFAM |
|
low complexity region
|
320 |
332 |
N/A |
INTRINSIC |
|
low complexity region
|
412 |
443 |
N/A |
INTRINSIC |
|
low complexity region
|
456 |
481 |
N/A |
INTRINSIC |
|
low complexity region
|
726 |
757 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000160019
AA Change: D158G
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000125124
Gene: ENSMUSG00000040287
AA Change: D158G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
35 |
46 |
N/A |
INTRINSIC |
|
low complexity region
|
65 |
81 |
N/A |
INTRINSIC |
|
C1
|
89 |
139 |
2.19e-7 |
SMART |
|
low complexity region
|
199 |
213 |
N/A |
INTRINSIC |
|
low complexity region
|
220 |
238 |
N/A |
INTRINSIC |
|
SH3
|
246 |
301 |
1.41e-16 |
SMART |
|
SH3
|
305 |
360 |
8.45e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000162302
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000160760
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000170336
|
| SMART Domains |
Protein: ENSMUSP00000128659
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
low complexity region
|
306 |
318 |
N/A |
INTRINSIC |
|
low complexity region
|
398 |
429 |
N/A |
INTRINSIC |
|
low complexity region
|
442 |
467 |
N/A |
INTRINSIC |
|
low complexity region
|
712 |
743 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000171426
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000166820
|
| SMART Domains |
Protein: ENSMUSP00000126608
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
109 |
132 |
N/A |
INTRINSIC |
|
R3H
|
152 |
229 |
1.26e-16 |
SMART |
|
Pfam:SUZ
|
250 |
303 |
5.7e-12 |
PFAM |
|
low complexity region
|
338 |
350 |
N/A |
INTRINSIC |
|
low complexity region
|
430 |
461 |
N/A |
INTRINSIC |
|
low complexity region
|
474 |
499 |
N/A |
INTRINSIC |
|
low complexity region
|
744 |
775 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000160610
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169888
|
| SMART Domains |
Protein: ENSMUSP00000126760
Gene: ENSMUSG00000025404
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SUZ
|
7 |
54 |
4.7e-12 |
PFAM |
|
low complexity region
|
71 |
83 |
N/A |
INTRINSIC |
|
low complexity region
|
163 |
194 |
N/A |
INTRINSIC |
|
low complexity region
|
443 |
474 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a component of the excitation-contraction coupling machinery of muscles. This protein is a member of the Stac gene family and contains an N-terminal cysteine-rich domain and two SH3 domains. Mutations in this gene are a cause of Native American myopathy. [provided by RefSeq, Nov 2013]
PHENOTYPE: Homozygous inactivation of this gene leads to neonatal lethality, abnormal posture, thin diaphragm muscle, abnormal skeletal muscle morphology characterized by centralized nuclei and disorganized myofibrils, and impaired skeletal muscle contractility due to defective excitation-contraction coupling. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Astn1 |
C |
T |
1: 158,338,520 (GRCm39) |
|
probably benign |
Het |
| Bms1 |
C |
A |
6: 118,366,290 (GRCm39) |
V1068F |
probably benign |
Het |
| Cand1 |
A |
T |
10: 119,047,626 (GRCm39) |
N621K |
probably damaging |
Het |
| Cd44 |
C |
T |
2: 102,661,732 (GRCm39) |
E418K |
possibly damaging |
Het |
| Clip2 |
A |
T |
5: 134,531,425 (GRCm39) |
N758K |
probably benign |
Het |
| Cst11 |
A |
T |
2: 148,613,161 (GRCm39) |
Y55N |
probably damaging |
Het |
| Cytip |
A |
T |
2: 58,023,872 (GRCm39) |
L316* |
probably null |
Het |
| Ddx52 |
T |
C |
11: 83,843,057 (GRCm39) |
M352T |
probably damaging |
Het |
| Fancd2 |
G |
A |
6: 113,512,720 (GRCm39) |
|
probably benign |
Het |
| Fat4 |
A |
T |
3: 39,034,068 (GRCm39) |
E2573D |
probably benign |
Het |
| Fbxl13 |
T |
G |
5: 21,695,454 (GRCm39) |
D646A |
probably damaging |
Het |
| Fhdc1 |
G |
A |
3: 84,352,042 (GRCm39) |
A1061V |
possibly damaging |
Het |
| Grid2ip |
A |
G |
5: 143,374,664 (GRCm39) |
D928G |
probably benign |
Het |
| Hmgxb3 |
A |
G |
18: 61,265,285 (GRCm39) |
L1231P |
probably damaging |
Het |
| Ifitm7 |
A |
G |
16: 13,801,541 (GRCm39) |
F73L |
probably damaging |
Het |
| Ikbkb |
T |
A |
8: 23,155,919 (GRCm39) |
T583S |
probably benign |
Het |
| Kdm6b |
G |
A |
11: 69,296,893 (GRCm39) |
A458V |
possibly damaging |
Het |
| Klra2 |
T |
C |
6: 131,207,180 (GRCm39) |
K143R |
probably benign |
Het |
| Kmt2d |
A |
G |
15: 98,764,309 (GRCm39) |
S42P |
possibly damaging |
Het |
| Krt78 |
T |
A |
15: 101,857,028 (GRCm39) |
M360L |
probably benign |
Het |
| Lamb1 |
A |
G |
12: 31,350,250 (GRCm39) |
N677S |
probably damaging |
Het |
| Lrrc9 |
G |
A |
12: 72,557,155 (GRCm39) |
V1407I |
probably benign |
Het |
| Myo6 |
A |
G |
9: 80,168,113 (GRCm39) |
T426A |
probably benign |
Het |
| Net1 |
T |
C |
13: 3,937,663 (GRCm39) |
Y146C |
probably damaging |
Het |
| Nlrp4d |
T |
A |
7: 10,122,625 (GRCm39) |
|
noncoding transcript |
Het |
| Notch4 |
A |
T |
17: 34,787,445 (GRCm39) |
N335I |
probably damaging |
Het |
| Or14j6 |
A |
T |
17: 38,215,134 (GRCm39) |
E232D |
probably benign |
Het |
| Or5ac20 |
A |
T |
16: 59,104,584 (GRCm39) |
I92K |
probably damaging |
Het |
| Or8b53 |
A |
T |
9: 38,667,784 (GRCm39) |
T267S |
probably benign |
Het |
| Pax3 |
A |
T |
1: 78,171,969 (GRCm39) |
H80Q |
probably damaging |
Het |
| Pclo |
A |
T |
5: 14,729,508 (GRCm39) |
|
probably benign |
Het |
| Pdgfra |
A |
G |
5: 75,348,567 (GRCm39) |
D869G |
probably damaging |
Het |
| Per2 |
T |
C |
1: 91,373,332 (GRCm39) |
Y152C |
probably damaging |
Het |
| Pilrb2 |
T |
C |
5: 137,865,125 (GRCm39) |
D223G |
probably benign |
Het |
| Rag1 |
T |
A |
2: 101,473,733 (GRCm39) |
I470F |
probably damaging |
Het |
| Rap1gap |
T |
C |
4: 137,445,317 (GRCm39) |
S333P |
probably damaging |
Het |
| Rundc3b |
A |
G |
5: 8,542,530 (GRCm39) |
Y430H |
probably damaging |
Het |
| Ryr1 |
T |
C |
7: 28,793,472 (GRCm39) |
D1332G |
probably benign |
Het |
| Sgo1 |
G |
A |
17: 53,986,567 (GRCm39) |
A208V |
possibly damaging |
Het |
| Skint5 |
C |
T |
4: 113,794,778 (GRCm39) |
|
probably null |
Het |
| Slc26a4 |
C |
T |
12: 31,578,853 (GRCm39) |
|
probably benign |
Het |
| Slc28a3 |
A |
T |
13: 58,706,451 (GRCm39) |
S597T |
probably benign |
Het |
| Slc4a5 |
T |
A |
6: 83,248,085 (GRCm39) |
|
probably benign |
Het |
| Slc52a3 |
A |
G |
2: 151,847,448 (GRCm39) |
|
probably benign |
Het |
| Tdo2 |
T |
C |
3: 81,871,224 (GRCm39) |
|
probably benign |
Het |
| Usp25 |
A |
T |
16: 76,912,335 (GRCm39) |
E1018V |
probably damaging |
Het |
| Vmn1r46 |
T |
A |
6: 89,953,886 (GRCm39) |
F245Y |
probably damaging |
Het |
|
| Other mutations in Stac3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00497:Stac3
|
APN |
10 |
127,339,533 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0051:Stac3
|
UTSW |
10 |
127,344,017 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R0090:Stac3
|
UTSW |
10 |
127,339,799 (GRCm39) |
unclassified |
probably benign |
|
|
R0131:Stac3
|
UTSW |
10 |
127,339,519 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0131:Stac3
|
UTSW |
10 |
127,339,519 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0132:Stac3
|
UTSW |
10 |
127,339,519 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0330:Stac3
|
UTSW |
10 |
127,343,616 (GRCm39) |
splice site |
probably null |
|
|
R0630:Stac3
|
UTSW |
10 |
127,343,632 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1132:Stac3
|
UTSW |
10 |
127,343,128 (GRCm39) |
missense |
probably benign |
|
|
R1450:Stac3
|
UTSW |
10 |
127,340,754 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1739:Stac3
|
UTSW |
10 |
127,343,635 (GRCm39) |
missense |
probably benign |
0.40 |
|
R2316:Stac3
|
UTSW |
10 |
127,339,229 (GRCm39) |
splice site |
probably null |
|
|
R2511:Stac3
|
UTSW |
10 |
127,339,787 (GRCm39) |
critical splice donor site |
probably null |
|
|
R3000:Stac3
|
UTSW |
10 |
127,344,016 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4324:Stac3
|
UTSW |
10 |
127,339,118 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4758:Stac3
|
UTSW |
10 |
127,339,214 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5040:Stac3
|
UTSW |
10 |
127,343,993 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6244:Stac3
|
UTSW |
10 |
127,344,044 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6275:Stac3
|
UTSW |
10 |
127,343,615 (GRCm39) |
nonsense |
probably null |
|
|
R7335:Stac3
|
UTSW |
10 |
127,340,769 (GRCm39) |
missense |
probably benign |
0.22 |
|
R8191:Stac3
|
UTSW |
10 |
127,344,068 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8290:Stac3
|
UTSW |
10 |
127,339,229 (GRCm39) |
splice site |
probably null |
|
|
R8410:Stac3
|
UTSW |
10 |
127,339,199 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8690:Stac3
|
UTSW |
10 |
127,339,494 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8799:Stac3
|
UTSW |
10 |
127,340,781 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9008:Stac3
|
UTSW |
10 |
127,339,454 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9095:Stac3
|
UTSW |
10 |
127,343,584 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9594:Stac3
|
UTSW |
10 |
127,338,654 (GRCm39) |
start codon destroyed |
probably null |
0.53 |
|
R9759:Stac3
|
UTSW |
10 |
127,344,083 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
| Posted On |
2015-04-16 |
Incidental Mutation