Mutagenetix > Incidental Mutation

Incidental Mutation 'R0398:Prim2'

32096

Institutional Source

Beutler Lab

Gene Symbol

Prim2

Ensembl Gene

ENSMUSG00000026134

Gene Name

DNA primase, p58 subunit

Synonyms

MMRRC Submission

038603-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.932) question?

Stock #

R0398 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

33492891-33708876 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to T at 33523757 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000027312 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027312]

AlphaFold

P33610

Predicted Effect

probably benign
Transcript: ENSMUST00000027312

SMART Domains

Protein: ENSMUSP00000027312
Gene: ENSMUSG00000026134

Domain	Start	End	E-Value	Type
Pfam:DNA_primase_lrg	182	448	6.2e-99	PFAM
low complexity region	482	503	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000185489

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000189552

Coding Region Coverage

1x: 98.8%
3x: 97.6%
10x: 93.8%
20x: 83.2%

Validation Efficiency

100% (81/81)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the 58 kilodalton subunit of DNA primase, an enzyme that plays a key role in the replication of DNA. The encoded protein forms a heterodimer with a 49 kilodalton subunit. This heterodimer functions as a DNA-directed RNA polymerase to synthesize small RNA primers that are used to create Okazaki fragments on the lagging strand of the DNA. Alternative splicing of this gene results in multiple transcript variants. This gene has a related pseudogene, which is also present on chromosome 6. [provided by RefSeq, Apr 2014]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb11	T	C	2: 69,117,010 (GRCm39)	Q546R	probably null	Het
Acr	T	G	15: 89,458,144 (GRCm39)	V275G	probably damaging	Het
Adam5	A	G	8: 25,303,448 (GRCm39)	Y160H	probably benign	Het
Adcy5	T	A	16: 35,089,438 (GRCm39)	M545K	probably damaging	Het
Aoc2	A	G	11: 101,216,379 (GRCm39)	E154G	possibly damaging	Het
Atg2a	T	G	19: 6,296,608 (GRCm39)	L338R	probably damaging	Het
Atp2a1	T	C	7: 126,049,590 (GRCm39)		probably benign	Het
Bbs7	A	G	3: 36,644,866 (GRCm39)	S436P	probably benign	Het
Bpnt1	T	C	1: 185,070,355 (GRCm39)	Y16H	probably benign	Het
Cbll1	A	T	12: 31,542,091 (GRCm39)	F90Y	probably damaging	Het
Cbs	G	T	17: 31,836,216 (GRCm39)	Q411K	probably benign	Het
Cdca2	A	C	14: 67,935,411 (GRCm39)	F435V	probably damaging	Het
Cdh13	T	G	8: 120,040,786 (GRCm39)	S664A	probably damaging	Het
Cdk17	T	A	10: 93,073,702 (GRCm39)	V438E	probably benign	Het
Cep295	T	C	9: 15,266,032 (GRCm39)	D40G	possibly damaging	Het
Col6a1	T	C	10: 76,545,952 (GRCm39)	H840R	unknown	Het
Cpa1	A	G	6: 30,645,250 (GRCm39)	T409A	probably benign	Het
Crlf1	G	A	8: 70,951,739 (GRCm39)		probably benign	Het
E2f2	T	A	4: 135,907,855 (GRCm39)	I184N	probably damaging	Het
Ehbp1	T	C	11: 22,045,886 (GRCm39)	D596G	probably damaging	Het
Elapor2	A	G	5: 9,495,367 (GRCm39)	R724G	probably benign	Het
Ets2	A	G	16: 95,517,267 (GRCm39)	Y333C	probably damaging	Het
Fam178b	A	G	1: 36,671,487 (GRCm39)		probably benign	Het
Fndc3b	A	G	3: 27,515,928 (GRCm39)	V626A	probably benign	Het
Gart	G	T	16: 91,436,337 (GRCm39)	A140E	probably damaging	Het
Gbp7	T	C	3: 142,251,274 (GRCm39)	S477P	possibly damaging	Het
Gm16380	T	C	9: 53,791,453 (GRCm39)		noncoding transcript	Het
Hmcn1	C	A	1: 150,674,565 (GRCm39)	R579M	possibly damaging	Het
Hoxb8	A	C	11: 96,173,937 (GRCm39)	H50P	probably damaging	Het
Hspa4	C	T	11: 53,163,706 (GRCm39)		probably null	Het
Hspa4l	G	A	3: 40,711,429 (GRCm39)		probably benign	Het
Hyal4	A	T	6: 24,756,670 (GRCm39)	Y296F	probably damaging	Het
Igsf8	C	A	1: 172,145,066 (GRCm39)	T131K	probably damaging	Het
Ilvbl	C	T	10: 78,415,373 (GRCm39)	P298L	probably damaging	Het
Jak2	T	A	19: 29,259,788 (GRCm39)	I229N	possibly damaging	Het
Kif1b	T	C	4: 149,288,688 (GRCm39)	D1205G	possibly damaging	Het
Lrrc63	T	C	14: 75,363,910 (GRCm39)	R74G	probably benign	Het
Lvrn	A	G	18: 47,013,760 (GRCm39)	T481A	probably benign	Het
Macf1	T	A	4: 123,244,810 (GRCm39)	T7312S	probably damaging	Het
Magel2	C	T	7: 62,030,299 (GRCm39)	Q1068*	probably null	Het
Mrpl3	A	G	9: 104,941,302 (GRCm39)	Y203C	probably damaging	Het
Nek2	T	A	1: 191,559,473 (GRCm39)	I326N	probably benign	Het
Nlrc4	A	C	17: 74,752,915 (GRCm39)	N489K	probably damaging	Het
Nlrp4f	A	T	13: 65,342,732 (GRCm39)	S304R	possibly damaging	Het
Ogfr	C	G	2: 180,235,492 (GRCm39)	R189G	probably damaging	Het
Or52b4i	T	A	7: 102,191,899 (GRCm39)	L252H	probably damaging	Het
Or5p78	T	A	7: 108,212,162 (GRCm39)	I216N	probably benign	Het
Or5w8	A	T	2: 87,688,401 (GRCm39)	N294I	probably damaging	Het
Orm3	A	G	4: 63,275,885 (GRCm39)	S145G	probably benign	Het
Pclo	A	G	5: 14,731,716 (GRCm39)	E3406G	unknown	Het
Pcx	T	G	19: 4,651,638 (GRCm39)	F4C	probably benign	Het
Pgd	C	A	4: 149,238,339 (GRCm39)	G364V	probably damaging	Het
Pla2g12a	C	A	3: 129,684,045 (GRCm39)	D102E	probably benign	Het
Pnpo	A	T	11: 96,833,253 (GRCm39)	C82*	probably null	Het
Prdm1	T	C	10: 44,315,805 (GRCm39)	N792S	probably damaging	Het
Proca1	C	A	11: 78,096,094 (GRCm39)	P242Q	probably benign	Het
Psmc5	A	G	11: 106,152,370 (GRCm39)	N129S	probably benign	Het
Ptchd4	A	G	17: 42,688,150 (GRCm39)	T231A	possibly damaging	Het
Qrfpr	C	T	3: 36,235,201 (GRCm39)		probably benign	Het
Rab44	G	A	17: 29,364,344 (GRCm39)		probably benign	Het
Racgap1	T	C	15: 99,526,508 (GRCm39)		probably benign	Het
Rapgef4	A	G	2: 71,861,385 (GRCm39)	E25G	probably damaging	Het
Rpl8	G	C	15: 76,789,246 (GRCm39)		probably benign	Het
Samd12	G	A	15: 53,583,116 (GRCm39)	P73S	possibly damaging	Het
Samd9l	T	A	6: 3,374,502 (GRCm39)	N920Y	probably damaging	Het
Sdk1	T	C	5: 141,948,476 (GRCm39)	V607A	probably benign	Het
Slc25a19	A	G	11: 115,508,401 (GRCm39)	Y196H	probably damaging	Het
Slc39a3	A	T	10: 80,869,621 (GRCm39)	M12K	possibly damaging	Het
Slc5a4a	T	C	10: 76,018,556 (GRCm39)	I501T	possibly damaging	Het
Sp4	A	T	12: 118,262,408 (GRCm39)	V546D	possibly damaging	Het
Ssh3	C	T	19: 4,313,727 (GRCm39)	V511M	possibly damaging	Het
Stard9	T	G	2: 120,526,788 (GRCm39)	V1015G	probably benign	Het
Thoc5	G	T	11: 4,871,978 (GRCm39)	V516F	possibly damaging	Het
Ttc21a	T	A	9: 119,783,628 (GRCm39)	I570N	probably damaging	Het
Ttc4	T	C	4: 106,524,770 (GRCm39)		probably null	Het
Ugt1a1	AT	A	1: 88,140,093 (GRCm39)		probably null	Het
Yipf3	A	G	17: 46,562,411 (GRCm39)	E298G	possibly damaging	Het
Zbtb34	C	A	2: 33,301,060 (GRCm39)	E494*	probably null	Het
Zfhx3	A	G	8: 109,677,878 (GRCm39)	Y2976C	probably damaging	Het

Other mutations in Prim2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00921:Prim2	APN	1	33,551,241 (GRCm39)	missense	probably damaging	1.00
IGL02576:Prim2	APN	1	33,523,798 (GRCm39)	missense	probably damaging	1.00
R0686:Prim2	UTSW	1	33,553,270 (GRCm39)	missense	probably benign
R1452:Prim2	UTSW	1	33,669,485 (GRCm39)	missense	probably benign
R3925:Prim2	UTSW	1	33,572,380 (GRCm39)	missense	probably damaging	1.00
R4398:Prim2	UTSW	1	33,551,192 (GRCm39)	missense	probably damaging	1.00
R4831:Prim2	UTSW	1	33,709,217 (GRCm39)	unclassified	probably benign
R4832:Prim2	UTSW	1	33,503,145 (GRCm39)	missense	probably benign
R5057:Prim2	UTSW	1	33,669,441 (GRCm39)	nonsense	probably null
R5240:Prim2	UTSW	1	33,519,397 (GRCm39)	intron	probably benign
R5294:Prim2	UTSW	1	33,707,974 (GRCm39)	missense	probably benign	0.11
R5771:Prim2	UTSW	1	33,493,232 (GRCm39)	missense	unknown
R5807:Prim2	UTSW	1	33,519,487 (GRCm39)	intron	probably benign
R6307:Prim2	UTSW	1	33,701,373 (GRCm39)	missense	probably benign	0.00
R7165:Prim2	UTSW	1	33,667,474 (GRCm39)	critical splice donor site	probably null
R8904:Prim2	UTSW	1	33,669,513 (GRCm39)	missense	possibly damaging	0.90
R9435:Prim2	UTSW	1	33,523,876 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTCTATCCCAAGCTCCTTGCAGAAC -3'
(R):5'- TCCGAACCCCGAATCACCTTGTTG -3'

Sequencing Primer
(F):5'- GCTCCTTGCAGAACACAAGAC -3'
(R):5'- ATCGCTGATGCTGTTACTACTG -3'

Posted On

2013-04-24