Mutagenetix > Incidental Mutation

Incidental Mutation 'R4618:Rnf38'

345077

Institutional Source

Beutler Lab

Gene Symbol

Rnf38

Ensembl Gene

ENSMUSG00000035696

Gene Name

ring finger protein 38

Synonyms

2610202O07Rik, 1700065B19Rik, Oip1

MMRRC Submission

041884-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.559) question?

Stock #

R4618 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

44126210-44233789 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 44142450 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 169 (S169P)

Ref Sequence

ENSEMBL: ENSMUSP00000121329 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000045793] [ENSMUST00000098098] [ENSMUST00000102934] [ENSMUST00000107836] [ENSMUST00000128426] [ENSMUST00000136730] [ENSMUST00000143337] [ENSMUST00000145760]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000045793
AA Change: S169P

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000038477
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC
low complexity region	192	207	N/A	INTRINSIC
low complexity region	244	258	N/A	INTRINSIC
low complexity region	287	310	N/A	INTRINSIC
RING	380	420	9.09e-8	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000098098
AA Change: S201P

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000095702
Gene: ENSMUSG00000035696
AA Change: S201P

Domain	Start	End	E-Value	Type
low complexity region	24	32	N/A	INTRINSIC
low complexity region	64	83	N/A	INTRINSIC
low complexity region	224	239	N/A	INTRINSIC
low complexity region	276	290	N/A	INTRINSIC
low complexity region	319	342	N/A	INTRINSIC
RING	412	452	9.09e-8	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000102934
AA Change: S169P

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000099998
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC
low complexity region	192	207	N/A	INTRINSIC
low complexity region	244	258	N/A	INTRINSIC
low complexity region	287	310	N/A	INTRINSIC
RING	380	420	9.09e-8	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000107836
AA Change: S169P

PolyPhen 2 Score 0.966 (Sensitivity: 0.77; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000103467
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC
low complexity region	192	207	N/A	INTRINSIC
low complexity region	244	258	N/A	INTRINSIC
low complexity region	287	310	N/A	INTRINSIC
RING	380	420	9.09e-8	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000128426
AA Change: S169P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000119889
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC
low complexity region	192	207	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000136730
AA Change: S169P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000116642
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC
low complexity region	192	207	N/A	INTRINSIC
low complexity region	244	258	N/A	INTRINSIC
low complexity region	287	310	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000143337
AA Change: S169P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000122342
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000145760
AA Change: S169P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000121329
Gene: ENSMUSG00000035696
AA Change: S169P

Domain	Start	End	E-Value	Type
low complexity region	32	51	N/A	INTRINSIC
low complexity region	192	202	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145378

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148869

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000152216

Meta Mutation Damage Score

0.0875

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.2%

Validation Efficiency

98% (89/91)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein with a coiled-coil motif and a RING-H2 motif (C3H2C2) at its carboxy-terminus. The RING motif is a zinc-binding domain found in a large set of proteins playing roles in diverse cellular processes including oncogenesis, development, signal transduction, and apoptosis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2008]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930432M17Rik	A	T	3: 121,473,095 (GRCm39)	K83N	unknown	Het
Adamtsl3	T	A	7: 82,255,728 (GRCm39)	M1580K	probably benign	Het
Adprhl1	A	G	8: 13,292,250 (GRCm39)		probably null	Het
Akap3	G	T	6: 126,843,406 (GRCm39)	C675F	probably benign	Het
Asap1	A	T	15: 64,024,744 (GRCm39)	H318Q	probably damaging	Het
Atf7ip	G	T	6: 136,542,104 (GRCm39)	A18S	probably damaging	Het
Bcl2a1a	A	C	9: 88,839,357 (GRCm39)	N85T	probably damaging	Het
Btnl6	G	A	17: 34,733,120 (GRCm39)	P248S	probably damaging	Het
C9	A	G	15: 6,520,944 (GRCm39)	D51G	probably damaging	Het
Ccdc14	T	A	16: 34,526,865 (GRCm39)	C257S	probably benign	Het
Cd5l	A	G	3: 87,275,926 (GRCm39)	T299A	probably benign	Het
Cstdc3	T	A	16: 36,132,952 (GRCm39)	D76E	possibly damaging	Het
Endou	C	T	15: 97,611,763 (GRCm39)	V292M	possibly damaging	Het
Fbxo36	T	C	1: 84,877,749 (GRCm39)	I137T	probably damaging	Het
Fcer1a	T	C	1: 173,050,208 (GRCm39)	I161V	possibly damaging	Het
Fsip2	A	G	2: 82,818,103 (GRCm39)	Y4612C	probably benign	Het
Gcnt2	T	A	13: 41,111,670 (GRCm39)	L353*	probably null	Het
Ghrhr	T	C	6: 55,358,739 (GRCm39)	F172S	probably damaging	Het
Gins1	T	A	2: 150,759,781 (GRCm39)		probably null	Het
Gm16519	T	G	17: 71,236,237 (GRCm39)	L62R	probably damaging	Het
Gpr20	T	C	15: 73,567,585 (GRCm39)	N268S	probably benign	Het
Greb1l	A	G	18: 10,498,965 (GRCm39)	T283A	probably benign	Het
Grin2c	T	A	11: 115,143,573 (GRCm39)	D729V	probably damaging	Het
Heatr4	T	G	12: 84,024,841 (GRCm39)	T327P	probably damaging	Het
Hes2	A	C	4: 152,244,845 (GRCm39)	S105R	probably benign	Het
Hsph1	A	G	5: 149,542,308 (GRCm39)	V705A	probably benign	Het
Ighv1-82	T	C	12: 115,916,280 (GRCm39)	T77A	probably benign	Het
Itih1	A	T	14: 30,651,788 (GRCm39)	D851E	probably benign	Het
Klhdc7b	A	G	15: 89,271,472 (GRCm39)	T785A	probably benign	Het
Lmbr1	G	T	5: 29,551,863 (GRCm39)	A74E	probably damaging	Het
Lonp1	A	C	17: 56,929,511 (GRCm39)	H175Q	probably benign	Het
Maml2	T	C	9: 13,531,371 (GRCm39)	F195S	probably damaging	Het
Man2b2	G	T	5: 36,974,983 (GRCm39)	T436K	probably benign	Het
Man2c1	T	C	9: 57,049,439 (GRCm39)		probably null	Het
Mrps15	G	A	4: 125,940,837 (GRCm39)		probably benign	Het
Mtrf1l	C	A	10: 5,767,586 (GRCm39)	V177F	probably benign	Het
Naxd	A	T	8: 11,559,489 (GRCm39)	I213F	probably damaging	Het
Nbeal1	T	A	1: 60,267,890 (GRCm39)		probably benign	Het
Nfatc1	T	C	18: 80,741,047 (GRCm39)	I318V	probably damaging	Het
Nid2	T	A	14: 19,858,078 (GRCm39)	I1297N	probably damaging	Het
Nol10	T	C	12: 17,398,562 (GRCm39)	V3A	probably damaging	Het
Nop14	G	T	5: 34,796,562 (GRCm39)	P765Q	probably damaging	Het
Noxa1	C	T	2: 24,981,761 (GRCm39)	G114D	probably damaging	Het
Ntmt2	A	T	1: 163,552,597 (GRCm39)	F10I	probably damaging	Het
Opa1	T	C	16: 29,405,857 (GRCm39)	W141R	probably damaging	Het
Or10a2	G	A	7: 106,673,761 (GRCm39)	C242Y	probably damaging	Het
Or13p4	A	T	4: 118,546,667 (GRCm39)		probably benign	Het
Or5d18	A	G	2: 87,864,898 (GRCm39)	V195A	probably benign	Het
Or8h10	A	G	2: 86,808,618 (GRCm39)	I174T	possibly damaging	Het
Pde4d	A	T	13: 110,070,411 (GRCm39)	M7L	probably benign	Het
Phykpl	G	A	11: 51,483,056 (GRCm39)	A188T	probably damaging	Het
Pkd2l1	C	A	19: 44,142,573 (GRCm39)	A490S	probably damaging	Het
Pkhd1l1	T	A	15: 44,403,078 (GRCm39)	V2260D	probably damaging	Het
Ptprt	T	C	2: 161,395,765 (GRCm39)	E1136G	probably damaging	Het
Rad21	A	T	15: 51,833,420 (GRCm39)	L353Q	probably damaging	Het
Rfx4	G	T	10: 84,716,760 (GRCm39)	A425S	probably benign	Het
Samd9l	C	A	6: 3,376,347 (GRCm39)	V305F	probably damaging	Het
Serpini1	A	G	3: 75,523,883 (GRCm39)	K164E	probably benign	Het
Sirt6	A	G	10: 81,462,408 (GRCm39)	L37P	probably damaging	Het
Sorbs1	T	C	19: 40,361,962 (GRCm39)	T141A	probably damaging	Het
Tacc2	A	T	7: 130,227,946 (GRCm39)	T1563S	probably benign	Het
Tbc1d14	A	C	5: 36,687,725 (GRCm39)		probably benign	Het
Tbrg4	G	A	11: 6,570,185 (GRCm39)		probably benign	Het
Tox2	T	C	2: 163,162,567 (GRCm39)	L479P	probably damaging	Het
Tpp1	A	T	7: 105,400,913 (GRCm39)	L38Q	probably benign	Het
Trhr	A	G	15: 44,061,037 (GRCm39)	N186D	probably benign	Het
Trmt1l	C	T	1: 151,329,799 (GRCm39)	Q581*	probably null	Het
Tsen54	T	A	11: 115,706,247 (GRCm39)		probably benign	Het
Tsg101	A	G	7: 46,542,257 (GRCm39)	I138T	possibly damaging	Het
Usp22	A	G	11: 61,052,269 (GRCm39)	S237P	probably damaging	Het
Vmn1r209	A	G	13: 22,990,619 (GRCm39)	S24P	possibly damaging	Het
Vmn2r18	A	T	5: 151,508,424 (GRCm39)	H233Q	possibly damaging	Het
Vmn2r45	A	T	7: 8,486,436 (GRCm39)	I284N	probably benign	Het
Vmn2r66	T	C	7: 84,644,296 (GRCm39)	I705V	possibly damaging	Het
Vsig1	G	T	X: 139,827,135 (GRCm39)	A95S	probably benign	Het
Zdhhc11	T	A	13: 74,127,349 (GRCm39)	M242K	probably benign	Het
Zfp352	A	G	4: 90,113,318 (GRCm39)	K486R	probably benign	Het

Other mutations in Rnf38

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01073:Rnf38	APN	4	44,137,645 (GRCm39)	missense	probably benign	0.09
IGL01992:Rnf38	APN	4	44,138,806 (GRCm39)	missense	probably damaging	1.00
IGL02682:Rnf38	APN	4	44,133,745 (GRCm39)	missense	probably damaging	1.00
IGL02951:Rnf38	APN	4	44,129,619 (GRCm39)	nonsense	probably null
IGL03032:Rnf38	APN	4	44,152,529 (GRCm39)	missense	probably damaging	0.99
IGL03326:Rnf38	APN	4	44,149,182 (GRCm39)	missense	probably benign	0.27
R0335:Rnf38	UTSW	4	44,152,507 (GRCm39)	missense	possibly damaging	0.59
R0336:Rnf38	UTSW	4	44,152,350 (GRCm39)	splice site	probably benign
R1473:Rnf38	UTSW	4	44,131,584 (GRCm39)	missense	probably benign	0.00
R1552:Rnf38	UTSW	4	44,142,468 (GRCm39)	splice site	probably null
R1670:Rnf38	UTSW	4	44,138,681 (GRCm39)	missense	probably damaging	0.96
R1708:Rnf38	UTSW	4	44,143,593 (GRCm39)	missense	probably damaging	1.00
R1943:Rnf38	UTSW	4	44,138,748 (GRCm39)	missense	probably damaging	0.99
R2063:Rnf38	UTSW	4	44,149,098 (GRCm39)	missense	probably damaging	0.99
R4348:Rnf38	UTSW	4	44,149,100 (GRCm39)	missense	possibly damaging	0.84
R4352:Rnf38	UTSW	4	44,149,100 (GRCm39)	missense	possibly damaging	0.84
R4353:Rnf38	UTSW	4	44,149,100 (GRCm39)	missense	possibly damaging	0.84
R4967:Rnf38	UTSW	4	44,152,460 (GRCm39)	missense	probably damaging	1.00
R5230:Rnf38	UTSW	4	44,149,176 (GRCm39)	missense	probably benign	0.17
R6275:Rnf38	UTSW	4	44,152,408 (GRCm39)	missense	probably benign	0.11
R6855:Rnf38	UTSW	4	44,149,224 (GRCm39)	missense	probably damaging	1.00
R7200:Rnf38	UTSW	4	44,137,620 (GRCm39)	missense	probably benign	0.01
R7326:Rnf38	UTSW	4	44,158,989 (GRCm39)	intron	probably benign
R7351:Rnf38	UTSW	4	44,149,102 (GRCm39)	missense	probably benign	0.40
R8728:Rnf38	UTSW	4	44,131,615 (GRCm39)	missense	probably benign	0.17
R8969:Rnf38	UTSW	4	44,149,079 (GRCm39)	missense	possibly damaging	0.85
R9313:Rnf38	UTSW	4	44,143,584 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- AGCCTAACCTAAGCATTCTGG -3'
(R):5'- CCATTTCTTACTCGTGGGTAGG -3'

Sequencing Primer
(F):5'- CTAAGCATTCTGGAAAAACTAGAAGC -3'
(R):5'- GGGAGATGTGGCAATTTGA -3'

Posted On

2015-09-25