Mutagenetix > Incidental Mutation

Incidental Mutation 'R4982:Mtpap'

384954

Institutional Source

Beutler Lab

Gene Symbol

Mtpap

Ensembl Gene

ENSMUSG00000024234

Gene Name

mitochondrial poly(A) polymerase

Synonyms

0610027A18Rik, Tent6, Papd1

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R4982 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

4375592-4397330 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 4396332 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 541 (H541Q)

Ref Sequence

ENSEMBL: ENSMUSP00000025077 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025077]

AlphaFold

Q9D0D3

Predicted Effect

probably benign
Transcript: ENSMUST00000025077
AA Change: H541Q

PolyPhen 2 Score 0.008 (Sensitivity: 0.96; Specificity: 0.76)

SMART Domains

Protein: ENSMUSP00000025077
Gene: ENSMUSG00000024234
AA Change: H541Q

Domain	Start	End	E-Value	Type
PDB:3PQ1\|B	44	528	N/A	PDB
SCOP:d1f5aa2	187	523	1e-35	SMART
low complexity region	529	538	N/A	INTRINSIC
low complexity region	547	558	N/A	INTRINSIC

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.6%
20x: 93.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the DNA polymerase type-B-like family. This enzyme synthesizes the 3' poly(A) tail of mitochondrial transcripts and plays a role in replication-dependent histone mRNA degradation.[provided by RefSeq, Jan 2011]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca13	A	T	11: 9,242,348 (GRCm39)	I1404L	possibly damaging	Het
Adra1b	A	G	11: 43,726,057 (GRCm39)	S287P	probably damaging	Het
Atxn2	G	T	5: 121,952,406 (GRCm39)	A1280S	possibly damaging	Het
Bbip1	T	C	19: 53,920,639 (GRCm39)		probably null	Het
Bbs2	A	G	8: 94,808,982 (GRCm39)		probably null	Het
Bcl11b	A	T	12: 107,932,031 (GRCm39)	C180*	probably null	Het
Bltp3a	T	C	17: 28,105,580 (GRCm39)	F702S	probably benign	Het
Bod1l	A	G	5: 41,977,816 (GRCm39)	V1166A	probably benign	Het
Bora	C	T	14: 99,284,788 (GRCm39)	P13S	probably damaging	Het
C2cd4c	T	C	10: 79,449,075 (GRCm39)	E24G	probably benign	Het
Ccne1	A	T	7: 37,799,996 (GRCm39)	I196N	probably damaging	Het
Chsy3	C	T	18: 59,542,647 (GRCm39)	S595L	probably benign	Het
Chsy3	T	A	18: 59,542,839 (GRCm39)	I659N	possibly damaging	Het
Cntrob	T	A	11: 69,202,188 (GRCm39)		probably null	Het
Col5a2	G	A	1: 45,428,618 (GRCm39)	P983S	possibly damaging	Het
Crat	T	A	2: 30,297,148 (GRCm39)		probably null	Het
Ctnnbl1	C	T	2: 157,678,473 (GRCm39)	H359Y	probably benign	Het
D430041D05Rik	A	G	2: 104,085,732 (GRCm39)	V83A	possibly damaging	Het
Dixdc1	A	G	9: 50,593,902 (GRCm39)	S488P	possibly damaging	Het
Dmrta1	T	C	4: 89,576,801 (GRCm39)	C86R	probably damaging	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Homo
Fam171a1	G	A	2: 3,179,505 (GRCm39)		probably null	Het
Fam222b	T	C	11: 78,045,569 (GRCm39)	C249R	probably damaging	Het
Fbxw18	T	A	9: 109,531,719 (GRCm39)		probably benign	Het
Fes	T	C	7: 80,036,952 (GRCm39)	Y44C	probably damaging	Het
Gimap6	A	G	6: 48,684,933 (GRCm39)	V51A	probably benign	Het
Gpr75	C	T	11: 30,841,463 (GRCm39)	L123F	possibly damaging	Het
Gpr75	C	A	11: 30,841,462 (GRCm39)	H122Q	probably damaging	Het
Greb1	A	G	12: 16,774,762 (GRCm39)	S212P	probably damaging	Het
Grin3a	T	C	4: 49,665,512 (GRCm39)	H1041R	probably benign	Het
Ifna5	A	G	4: 88,753,861 (GRCm39)	N34D	probably damaging	Het
Ift140	A	T	17: 25,255,968 (GRCm39)	H221L	probably damaging	Het
Igsf3	T	C	3: 101,342,983 (GRCm39)	V540A	probably benign	Het
Il10ra	A	G	9: 45,180,357 (GRCm39)	L5S	probably damaging	Het
Klra2	A	T	6: 131,197,152 (GRCm39)	D282E	probably benign	Het
Lyst	T	A	13: 13,900,539 (GRCm39)	H3138Q	probably damaging	Het
Malrd1	A	G	2: 16,046,940 (GRCm39)	T1689A	probably benign	Het
Mon2	A	T	10: 122,831,694 (GRCm39)	L1671M	probably damaging	Het
Mpped1	T	C	15: 83,720,528 (GRCm39)	F71S	probably damaging	Het
Muc5ac	T	A	7: 141,363,193 (GRCm39)		probably benign	Het
Mybbp1a	T	C	11: 72,336,040 (GRCm39)	I451T	probably damaging	Het
Myh7	T	A	14: 55,210,224 (GRCm39)	E1827V	probably damaging	Het
Or1j14	A	T	2: 36,417,409 (GRCm39)		probably null	Het
Or2h15	A	T	17: 38,441,468 (GRCm39)	I205N	probably damaging	Het
Or5p75-ps1	T	A	7: 108,107,855 (GRCm39)	Y197*	probably null	Het
Or8b8	C	A	9: 37,808,811 (GRCm39)	T37N	probably damaging	Het
Os9	C	T	10: 126,956,920 (GRCm39)	R23H	possibly damaging	Het
Otud6b	A	G	4: 14,815,607 (GRCm39)	L261P	probably damaging	Het
Pcdhga2	A	G	18: 37,802,476 (GRCm39)	N107D	probably benign	Het
Pclo	C	T	5: 14,729,308 (GRCm39)		probably benign	Het
Peg10	T	TCCG	6: 4,756,451 (GRCm39)		probably benign	Het
Phtf1	T	A	3: 103,906,024 (GRCm39)	S524T	probably damaging	Het
Pkdrej	A	C	15: 85,703,197 (GRCm39)	L913R	probably damaging	Het
Pld1	C	A	3: 28,085,447 (GRCm39)	A201D	probably damaging	Het
Rorb	T	A	19: 18,955,052 (GRCm39)	Q103L	probably benign	Het
Sec24d	C	T	3: 123,093,255 (GRCm39)	T284M	probably benign	Het
Serpinb3b	T	C	1: 107,085,484 (GRCm39)	I86V	probably benign	Het
Serpinb6a	A	T	13: 34,102,857 (GRCm39)	M201K	probably damaging	Het
Snx8	A	G	5: 140,337,989 (GRCm39)	S219P	probably benign	Het
Sp8	C	T	12: 118,812,160 (GRCm39)	T5I	probably damaging	Het
Tanc1	A	G	2: 59,630,287 (GRCm39)	N749D	probably damaging	Het
Tarm1	G	C	7: 3,537,612 (GRCm39)	P284A	probably damaging	Het
Tbx15	A	T	3: 99,161,390 (GRCm39)	E65V	probably benign	Het
Ticam1	T	A	17: 56,579,020 (GRCm39)	H25L	probably benign	Het
Tmprss11g	T	A	5: 86,640,674 (GRCm39)	L170F	probably damaging	Het
Tnfsf9	A	G	17: 57,414,504 (GRCm39)	*310W	probably null	Het
Tsks	C	T	7: 44,593,418 (GRCm39)	T128I	possibly damaging	Het
Vmn1r175	A	T	7: 23,508,494 (GRCm39)	N44K	possibly damaging	Het
Vmn1r45	A	G	6: 89,910,847 (GRCm39)	I41T	probably damaging	Het
Ythdc2	A	G	18: 45,004,532 (GRCm39)	N1102S	probably benign	Het
Zswim4	C	T	8: 84,953,296 (GRCm39)		probably null	Het

Other mutations in Mtpap

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00705:Mtpap	APN	18	4,379,670 (GRCm39)	missense	probably damaging	0.99
IGL00848:Mtpap	APN	18	4,380,717 (GRCm39)	missense	probably benign	0.00
IGL02659:Mtpap	APN	18	4,380,703 (GRCm39)	nonsense	probably null
IGL02828:Mtpap	APN	18	4,386,207 (GRCm39)	missense	probably damaging	0.99
IGL03006:Mtpap	APN	18	4,375,721 (GRCm39)	missense	possibly damaging	0.49
R0031:Mtpap	UTSW	18	4,383,244 (GRCm39)	missense	probably damaging	0.96
R0350:Mtpap	UTSW	18	4,396,195 (GRCm39)	missense	possibly damaging	0.91
R3787:Mtpap	UTSW	18	4,380,670 (GRCm39)	missense	probably damaging	1.00
R4381:Mtpap	UTSW	18	4,383,223 (GRCm39)	missense	probably benign	0.04
R4698:Mtpap	UTSW	18	4,375,724 (GRCm39)	missense	possibly damaging	0.59
R4717:Mtpap	UTSW	18	4,396,394 (GRCm39)	missense	possibly damaging	0.82
R4850:Mtpap	UTSW	18	4,387,044 (GRCm39)	missense	probably damaging	1.00
R4963:Mtpap	UTSW	18	4,375,638 (GRCm39)	missense	probably benign	0.05
R5059:Mtpap	UTSW	18	4,375,827 (GRCm39)	intron	probably benign
R5311:Mtpap	UTSW	18	4,386,328 (GRCm39)	missense	probably damaging	1.00
R5600:Mtpap	UTSW	18	4,379,674 (GRCm39)	missense	probably damaging	1.00
R5713:Mtpap	UTSW	18	4,396,280 (GRCm39)	missense	probably benign	0.00
R6312:Mtpap	UTSW	18	4,396,175 (GRCm39)	missense	possibly damaging	0.89
R7006:Mtpap	UTSW	18	4,380,873 (GRCm39)	missense	possibly damaging	0.63
R7059:Mtpap	UTSW	18	4,396,202 (GRCm39)	missense	probably damaging	1.00
R7117:Mtpap	UTSW	18	4,380,889 (GRCm39)	critical splice donor site	probably null
R7286:Mtpap	UTSW	18	4,387,068 (GRCm39)	missense	probably benign	0.20
R7452:Mtpap	UTSW	18	4,379,705 (GRCm39)	missense	possibly damaging	0.75
R7845:Mtpap	UTSW	18	4,387,134 (GRCm39)	missense	possibly damaging	0.56
R7868:Mtpap	UTSW	18	4,380,673 (GRCm39)	missense	probably damaging	1.00
R8390:Mtpap	UTSW	18	4,396,141 (GRCm39)	missense	probably damaging	0.99
R8774:Mtpap	UTSW	18	4,387,032 (GRCm39)	nonsense	probably null
R8774-TAIL:Mtpap	UTSW	18	4,387,032 (GRCm39)	nonsense	probably null
R9001:Mtpap	UTSW	18	4,380,831 (GRCm39)	missense	probably benign	0.00
R9194:Mtpap	UTSW	18	4,380,834 (GRCm39)	nonsense	probably null
R9194:Mtpap	UTSW	18	4,380,833 (GRCm39)	missense	probably benign	0.00
R9238:Mtpap	UTSW	18	4,396,439 (GRCm39)	missense	probably damaging	1.00
X0025:Mtpap	UTSW	18	4,375,710 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACAAGCCTGATTCCTCTCC -3'
(R):5'- GCCTATGAACATTTAGTGGCAG -3'

Sequencing Primer
(F):5'- CATCCAGAATCCTTTTGAAACATCTC -3'
(R):5'- AGTGGCAGTTCTTCCCAGAAG -3'

Posted On

2016-05-10