Mutagenetix > Incidental Mutation

Incidental Mutation 'R5510:Dgcr8'

431182

Institutional Source

Beutler Lab

Gene Symbol

Dgcr8

Ensembl Gene

ENSMUSG00000022718

Gene Name

DGCR8, microprocessor complex subunit

Synonyms

D16Wis2, D16H22S788E, DiGeorge syndrome critical region gene 8, D16H22S1742E, Vo59c07, N41, Gy1

MMRRC Submission

043071-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R5510 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

18071812-18107110 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 18095039 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Aspartic acid at position 566 (N566D)

Ref Sequence

ENSEMBL: ENSMUSP00000009321 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000009321] [ENSMUST00000115633]

AlphaFold

Q9EQM6

Predicted Effect

probably damaging
Transcript: ENSMUST00000009321
AA Change: N566D

PolyPhen 2 Score 0.976 (Sensitivity: 0.76; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000009321
Gene: ENSMUSG00000022718
AA Change: N566D

Domain	Start	End	E-Value	Type
low complexity region	165	176	N/A	INTRINSIC
WW	302	334	7.26e-6	SMART
low complexity region	411	421	N/A	INTRINSIC
DSRM	512	577	5.68e-10	SMART
DSRM	620	685	8.26e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000115633

SMART Domains

Protein: ENSMUSP00000111296
Gene: ENSMUSG00000022718

Domain	Start	End	E-Value	Type
low complexity region	165	176	N/A	INTRINSIC
WW	302	334	7.26e-6	SMART
low complexity region	411	421	N/A	INTRINSIC
DSRM	512	577	5.68e-10	SMART
DSRM	620	685	8.26e-1	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128856

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156274

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000232476

Meta Mutation Damage Score

0.1172

Coding Region Coverage

1x: 98.5%
3x: 97.3%
10x: 95.1%
20x: 90.1%

Validation Efficiency

99% (91/92)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a subunit of the microprocessor complex which mediates the biogenesis of microRNAs from the primary microRNA transcript. The encoded protein is a double-stranded RNA binding protein that functions as the non-catalytic subunit of the microprocessor complex. This protein is required for binding the double-stranded RNA substrate and facilitates cleavage of the RNA by the ribonuclease III protein, Drosha. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Jun 2010]
PHENOTYPE: Mice heterozygous for a gene trap allele exhibit reduced dendritic spine number and dendritiic complexity along with abnormal prepulse inhibition and abnormal spatial working memory. Homozygous mice are embryonic lethal. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 73 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adgrl4	T	G	3: 151,203,467 (GRCm39)	I59R	possibly damaging	Het
Adgrv1	T	A	13: 81,593,363 (GRCm39)	D4208V	probably damaging	Het
Aimp2	A	T	5: 143,843,347 (GRCm39)		probably benign	Het
Ank3	G	A	10: 69,838,395 (GRCm39)	R1566K	possibly damaging	Het
Ankib1	A	G	5: 3,779,693 (GRCm39)	V392A	probably benign	Het
Ap2b1	A	G	11: 83,227,563 (GRCm39)		probably null	Het
Arsg	A	G	11: 109,418,700 (GRCm39)	E232G	probably benign	Het
Axdnd1	A	G	1: 156,162,920 (GRCm39)	F144S	probably benign	Het
Bud13	T	A	9: 46,203,498 (GRCm39)	M111K	probably damaging	Het
Cav2	T	C	6: 17,287,012 (GRCm39)	F152S	possibly damaging	Het
Ccdc180	A	G	4: 45,928,046 (GRCm39)	T1194A	probably damaging	Het
Ccdc192	G	A	18: 57,671,156 (GRCm39)		probably null	Het
Ccdc88c	T	C	12: 100,911,290 (GRCm39)	K848R	probably damaging	Het
Ceacam15	A	G	7: 16,406,024 (GRCm39)	W176R	probably damaging	Het
Cenpf	A	T	1: 189,415,100 (GRCm39)	D136E	probably benign	Het
Dclk2	T	C	3: 86,813,344 (GRCm39)	I201V	possibly damaging	Het
Defa24	T	A	8: 22,224,612 (GRCm39)	D20E	probably damaging	Het
Dido1	C	A	2: 180,326,966 (GRCm39)	V386L	probably benign	Het
Dnah2	C	T	11: 69,349,746 (GRCm39)	R2399Q	probably benign	Het
Dtx3	G	A	10: 127,028,807 (GRCm39)	P141S	probably benign	Het
Fmn1	T	C	2: 113,426,714 (GRCm39)	Y1144H	probably damaging	Het
Gabbr2	A	G	4: 46,734,113 (GRCm39)	L535P	probably damaging	Het
Gimap3	T	A	6: 48,742,183 (GRCm39)	E249V	possibly damaging	Het
Git2	A	T	5: 114,881,835 (GRCm39)		probably null	Het
Gm4922	T	C	10: 18,659,745 (GRCm39)	T326A	probably benign	Het
Gsdmc2	T	G	15: 63,700,045 (GRCm39)	E242D	probably benign	Het
Hdgfl2	G	A	17: 56,389,118 (GRCm39)	G31S	possibly damaging	Het
Herc2	A	T	7: 55,856,519 (GRCm39)	I3956F	probably damaging	Het
Hsf2bp	G	A	17: 32,165,721 (GRCm39)	R134C	unknown	Het
Igf1r	G	C	7: 67,843,107 (GRCm39)	R739S	probably benign	Het
Igkv4-51	T	C	6: 69,658,443 (GRCm39)	E102G	probably damaging	Het
Kif1a	T	G	1: 92,969,414 (GRCm39)	I1156L	possibly damaging	Het
Kti12	T	C	4: 108,705,821 (GRCm39)	L245S	probably damaging	Het
Med17	A	G	9: 15,181,700 (GRCm39)	S17P	probably benign	Het
Mllt6	G	A	11: 97,560,326 (GRCm39)	S210N	possibly damaging	Het
Mrps18b	A	G	17: 36,225,215 (GRCm39)		probably benign	Het
Ms4a8a	A	G	19: 11,056,828 (GRCm39)	S85P	probably benign	Het
Msln	T	C	17: 25,968,847 (GRCm39)	Q487R	probably benign	Het
Myh13	A	G	11: 67,228,549 (GRCm39)	N363S	probably benign	Het
Myo6	T	C	9: 80,152,942 (GRCm39)	F192L	probably damaging	Het
Nfkbiz	T	C	16: 55,634,383 (GRCm39)	D688G	probably damaging	Het
Nsun4	C	T	4: 115,908,974 (GRCm39)	V529I	possibly damaging	Het
Or12d15	A	T	17: 37,694,192 (GRCm39)	M245L	probably benign	Het
Or1j16	G	A	2: 36,530,975 (GRCm39)	R308K	probably benign	Het
Or5p70	G	A	7: 107,994,332 (GRCm39)	A2T	probably benign	Het
Phf11a	C	A	14: 59,516,834 (GRCm39)	C208F	probably damaging	Het
Plekhh2	G	A	17: 84,874,275 (GRCm39)	C520Y	probably benign	Het
Plxna4	C	A	6: 32,155,293 (GRCm39)	M1550I	probably damaging	Het
Pnpla6	A	T	8: 3,571,397 (GRCm39)	Y140F	probably damaging	Het
Ppp1r12a	T	A	10: 108,085,488 (GRCm39)	S478T	possibly damaging	Het
Prkcz	C	A	4: 155,357,393 (GRCm39)		probably null	Het
Prss55	T	A	14: 64,314,574 (GRCm39)	M199L	probably damaging	Het
Qrich1	G	A	9: 108,433,659 (GRCm39)	V651I	possibly damaging	Het
Ralyl	T	C	3: 13,842,005 (GRCm39)	V47A	probably damaging	Het
Raph1	A	T	1: 60,562,105 (GRCm39)		probably benign	Het
Rgs12	T	C	5: 35,123,383 (GRCm39)	Y389H	probably damaging	Het
Sec24b	C	A	3: 129,834,544 (GRCm39)	G82V	probably damaging	Het
Sema4a	A	G	3: 88,357,293 (GRCm39)		probably null	Het
Slc25a11	A	T	11: 70,536,361 (GRCm39)	W149R	probably damaging	Het
Slc2a7	T	G	4: 150,244,551 (GRCm39)	S340A	probably benign	Het
Slc32a1	T	A	2: 158,456,716 (GRCm39)	M457K	probably damaging	Het
Spata31d1e	T	C	13: 59,890,234 (GRCm39)		probably null	Het
Spint4	C	T	2: 164,542,812 (GRCm39)	T135M	probably damaging	Het
Sult2a2	A	C	7: 13,472,228 (GRCm39)	N142H	probably damaging	Het
Tbc1d1	G	A	5: 64,490,738 (GRCm39)	G863D	probably damaging	Het
Tmem156	G	A	5: 65,232,917 (GRCm39)	T151M	probably benign	Het
Trip12	T	C	1: 84,746,401 (GRCm39)	Q459R	probably damaging	Het
Vmn2r116	G	A	17: 23,605,095 (GRCm39)	C136Y	probably damaging	Het
Vmn2r51	C	T	7: 9,836,545 (GRCm39)	V79M	possibly damaging	Het
Vmn2r67	A	T	7: 84,801,023 (GRCm39)	D304E	probably benign	Het
Wdr93	T	A	7: 79,399,779 (GRCm39)	F123I	probably damaging	Het
Zfp672	A	T	11: 58,207,456 (GRCm39)	C288*	probably null	Het
Zp1	T	C	19: 10,896,769 (GRCm39)	Y90C	probably damaging	Het

Other mutations in Dgcr8

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01525:Dgcr8	APN	16	18,101,808 (GRCm39)	missense	probably damaging	1.00
IGL01767:Dgcr8	APN	16	18,096,200 (GRCm39)	missense	probably damaging	0.98
IGL02349:Dgcr8	APN	16	18,098,170 (GRCm39)	missense	possibly damaging	0.67
IGL02834:Dgcr8	APN	16	18,090,623 (GRCm39)	missense	probably benign	0.08
disneyland	UTSW	16	18,077,487 (GRCm39)	missense	probably damaging	1.00
R1558:Dgcr8	UTSW	16	18,077,452 (GRCm39)	missense	probably damaging	1.00
R1587:Dgcr8	UTSW	16	18,098,155 (GRCm39)	missense	probably damaging	1.00
R1656:Dgcr8	UTSW	16	18,074,577 (GRCm39)	missense	probably benign	0.00
R1866:Dgcr8	UTSW	16	18,076,178 (GRCm39)	missense	probably damaging	1.00
R1886:Dgcr8	UTSW	16	18,096,218 (GRCm39)	missense	possibly damaging	0.95
R2144:Dgcr8	UTSW	16	18,102,120 (GRCm39)	missense	probably damaging	1.00
R2145:Dgcr8	UTSW	16	18,098,094 (GRCm39)	missense	probably benign	0.26
R3773:Dgcr8	UTSW	16	18,074,639 (GRCm39)	missense	probably damaging	0.99
R4568:Dgcr8	UTSW	16	18,098,258 (GRCm39)	missense	probably benign	0.14
R4783:Dgcr8	UTSW	16	18,076,174 (GRCm39)	nonsense	probably null
R4784:Dgcr8	UTSW	16	18,076,174 (GRCm39)	nonsense	probably null
R5138:Dgcr8	UTSW	16	18,095,941 (GRCm39)	missense	probably damaging	0.99
R5276:Dgcr8	UTSW	16	18,101,635 (GRCm39)	missense	probably benign	0.01
R5476:Dgcr8	UTSW	16	18,077,843 (GRCm39)	missense	probably damaging	1.00
R5745:Dgcr8	UTSW	16	18,098,307 (GRCm39)	missense	probably benign	0.01
R5771:Dgcr8	UTSW	16	18,090,632 (GRCm39)	missense	probably benign	0.25
R6035:Dgcr8	UTSW	16	18,076,178 (GRCm39)	missense	probably damaging	1.00
R6035:Dgcr8	UTSW	16	18,076,178 (GRCm39)	missense	probably damaging	1.00
R6182:Dgcr8	UTSW	16	18,098,172 (GRCm39)	missense	probably benign	0.00
R6190:Dgcr8	UTSW	16	18,102,274 (GRCm39)	missense	probably damaging	0.97
R6633:Dgcr8	UTSW	16	18,102,046 (GRCm39)	missense	possibly damaging	0.94
R6786:Dgcr8	UTSW	16	18,101,693 (GRCm39)	nonsense	probably null
R7468:Dgcr8	UTSW	16	18,077,487 (GRCm39)	missense	probably damaging	1.00
R8325:Dgcr8	UTSW	16	18,076,149 (GRCm39)	missense	probably damaging	1.00
R8733:Dgcr8	UTSW	16	18,077,825 (GRCm39)	missense	probably benign	0.03
R8801:Dgcr8	UTSW	16	18,098,500 (GRCm39)	missense	probably damaging	0.98
R8805:Dgcr8	UTSW	16	18,076,161 (GRCm39)	missense	probably damaging	1.00
R9014:Dgcr8	UTSW	16	18,077,514 (GRCm39)	missense	possibly damaging	0.83
R9289:Dgcr8	UTSW	16	18,098,079 (GRCm39)	unclassified	probably benign
R9661:Dgcr8	UTSW	16	18,098,579 (GRCm39)	missense	possibly damaging	0.53
R9697:Dgcr8	UTSW	16	18,098,283 (GRCm39)	missense	probably benign
Z1176:Dgcr8	UTSW	16	18,096,182 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- GATGAAGACCCAGCATGCAG -3'
(R):5'- GTCTCAGCATCTCAGACAAAGC -3'

Sequencing Primer
(F):5'- CTCCTAGACATGCCTGAGATG -3'
(R):5'- GCATAGACATGATTTATTCAGGGG -3'

Posted On

2016-10-05