Mutagenetix > Incidental Mutation

Incidental Mutation 'R5610:Prdx1'

440283

Institutional Source

Beutler Lab

Gene Symbol

Prdx1

Ensembl Gene

ENSMUSG00000028691

Gene Name

peroxiredoxin 1

Synonyms

Paga, Trx dependent peroxide reductase 2, osteoblast specific factor 3, Prx I, macrophase stress protein 22kDa, macrophage 23kDa stress protein, PAG, Tdpx2, PrxI, thioredoxin dependent peroxide reductase 2, TDX2, OSF-3, MSP23, prx1

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.643) question?

Stock #

R5610 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

116542796-116557196 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 116550124 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 102 (I102N)

Ref Sequence

ENSEMBL: ENSMUSP00000119794 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030454] [ENSMUST00000106470] [ENSMUST00000129315] [ENSMUST00000135573] [ENSMUST00000151129]

AlphaFold

P35700

Predicted Effect

probably damaging
Transcript: ENSMUST00000030454
AA Change: I102N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000030454
Gene: ENSMUSG00000028691
AA Change: I102N

Domain	Start	End	E-Value	Type
Pfam:Redoxin	7	158	1.1e-18	PFAM
Pfam:AhpC-TSA	8	142	9e-44	PFAM
Pfam:1-cysPrx_C	162	176	8e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000106470
AA Change: I102N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000102078
Gene: ENSMUSG00000028691
AA Change: I102N

Domain	Start	End	E-Value	Type
Pfam:Redoxin	7	157	2.7e-17	PFAM
Pfam:AhpC-TSA	8	142	6.1e-42	PFAM
Pfam:1-cysPrx_C	162	197	2.2e-17	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000129315
AA Change: I102N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000117007
Gene: ENSMUSG00000028691
AA Change: I102N

Domain	Start	End	E-Value	Type
Pfam:Redoxin	7	123	3.3e-14	PFAM
Pfam:AhpC-TSA	8	123	1.8e-37	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000135573
AA Change: I102N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000114159
Gene: ENSMUSG00000028691
AA Change: I102N

Domain	Start	End	E-Value	Type
Pfam:Redoxin	7	158	3.8e-18	PFAM
Pfam:AhpC-TSA	8	142	2.8e-43	PFAM
Pfam:1-cysPrx_C	162	197	2.1e-17	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000151129
AA Change: I102N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000119794
Gene: ENSMUSG00000028691
AA Change: I102N

Domain	Start	End	E-Value	Type
Pfam:Redoxin	7	158	9.8e-19	PFAM
Pfam:AhpC-TSA	8	142	8e-44	PFAM

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.4%
20x: 95.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the peroxiredoxin family of antioxidant enzymes, which reduce hydrogen peroxide and alkyl hydroperoxides. The encoded protein may play an antioxidant protective role in cells, and may contribute to the antiviral activity of CD8(+) T-cells. This protein may have a proliferative effect and play a role in cancer development or progression. Four transcript variants encoding the same protein have been identified for this gene. [provided by RefSeq, Jan 2011]
PHENOTYPE: Mutant mice exhibit defects in antioxidant defense that manifest as hemolytic anemia and malignancies. The phenotype is more severe in homozygous mutant mice which die prematurely. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700018F24Rik	A	G	5: 144,982,156 (GRCm39)	D247G	possibly damaging	Het
1700123K08Rik	A	G	5: 138,562,403 (GRCm39)		probably null	Het
Abca8b	C	A	11: 109,868,639 (GRCm39)	G175V	probably damaging	Het
Accsl	C	A	2: 93,692,118 (GRCm39)		probably null	Het
Adad2	C	T	8: 120,341,500 (GRCm39)	R171C	probably benign	Het
Adgrv1	A	C	13: 81,669,236 (GRCm39)	L2440R	probably damaging	Het
Antxr1	A	G	6: 87,232,845 (GRCm39)	V239A	probably damaging	Het
Aoc1l2	G	A	6: 48,907,953 (GRCm39)	V318I	probably benign	Het
Arhgap28	G	A	17: 68,203,235 (GRCm39)	Q73*	probably null	Het
Arrdc5	C	T	17: 56,604,846 (GRCm39)	R147H	probably benign	Het
Ash1l	T	C	3: 88,930,492 (GRCm39)	Y1990H	probably damaging	Het
Bank1	T	C	3: 135,772,148 (GRCm39)	E494G	probably damaging	Het
Bicral	A	T	17: 47,119,418 (GRCm39)	I701N	probably damaging	Het
Bod1l	T	C	5: 41,979,217 (GRCm39)	Y699C	probably damaging	Het
C3ar1	T	G	6: 122,827,537 (GRCm39)	T227P	probably benign	Het
Ccr3	C	A	9: 123,829,518 (GRCm39)	D284E	probably damaging	Het
Cdh13	T	C	8: 119,578,462 (GRCm39)	V163A	possibly damaging	Het
CK137956	C	T	4: 127,840,440 (GRCm39)		probably null	Het
Cltc	T	C	11: 86,612,472 (GRCm39)	S529G	probably benign	Het
Cplane2	C	T	4: 140,947,177 (GRCm39)	P186L	probably benign	Het
Ddx11	A	G	17: 66,457,021 (GRCm39)	K783E	probably damaging	Het
Dnah3	T	A	7: 119,538,288 (GRCm39)		probably null	Het
Eef2k	A	G	7: 120,486,005 (GRCm39)	H408R	probably benign	Het
Esr1	A	G	10: 4,951,221 (GRCm39)	K533R	probably damaging	Het
Fat1	T	A	8: 45,406,109 (GRCm39)	Y953*	probably null	Het
Fosl1	T	A	19: 5,505,133 (GRCm39)		probably null	Het
Frmd4b	A	G	6: 97,283,752 (GRCm39)	M373T	probably benign	Het
Gm1968	A	G	16: 29,777,557 (GRCm39)		noncoding transcript	Het
Gpr26	T	C	7: 131,568,694 (GRCm39)	V13A	possibly damaging	Het
Gtf3c1	T	C	7: 125,303,117 (GRCm39)	N106S	possibly damaging	Het
Itgb8	T	G	12: 119,134,429 (GRCm39)	E546A	probably damaging	Het
Itpr3	C	T	17: 27,337,540 (GRCm39)	T2450M	probably benign	Het
Kif1a	A	T	1: 92,953,450 (GRCm39)	Y1245N	probably damaging	Het
Klrb1f	G	A	6: 129,031,335 (GRCm39)		probably null	Het
Lars1	A	G	18: 42,390,156 (GRCm39)	L37P	probably benign	Het
Lnpk	T	C	2: 74,378,369 (GRCm39)	T131A	probably benign	Het
Mob3c	C	T	4: 115,690,878 (GRCm39)	T156I	probably benign	Het
Nadk	T	A	4: 155,668,628 (GRCm39)	W100R	probably damaging	Het
Npy6r	A	T	18: 44,409,061 (GRCm39)	I161F	probably benign	Het
Or4c107	A	C	2: 88,789,170 (GRCm39)	D120A	probably damaging	Het
Or6c204	G	A	10: 129,022,426 (GRCm39)	T288I	probably damaging	Het
Pcdhga3	A	G	18: 37,808,276 (GRCm39)	E243G	possibly damaging	Het
Pdss2	A	G	10: 43,315,828 (GRCm39)	T361A	probably benign	Het
Pkd1l2	G	T	8: 117,769,059 (GRCm39)	Q1198K	probably benign	Het
Prss1	G	A	6: 41,438,147 (GRCm39)	V25I	probably benign	Het
Pspc1	A	G	14: 57,015,388 (GRCm39)	Y77H	probably damaging	Het
Rnf5	T	C	17: 34,820,712 (GRCm39)		probably benign	Het
Ryr1	C	A	7: 28,811,399 (GRCm39)	M235I	probably benign	Het
Sec24c	A	G	14: 20,741,893 (GRCm39)	Y776C	probably damaging	Het
Sharpin	A	G	15: 76,234,253 (GRCm39)		probably null	Het
Slc12a4	C	A	8: 106,676,845 (GRCm39)	V482L	possibly damaging	Het
Slc38a1	C	T	15: 96,514,022 (GRCm39)		probably null	Het
Smtn	G	T	11: 3,479,582 (GRCm39)	T495N	probably damaging	Het
Sncaip	A	G	18: 53,001,991 (GRCm39)	T171A	probably benign	Het
Sprr2e	T	C	3: 92,260,399 (GRCm39)	*77R	probably null	Het
Syngap1	T	A	17: 27,178,754 (GRCm39)	D443E	possibly damaging	Het
Taldo1	T	C	7: 140,972,205 (GRCm39)	V24A	probably damaging	Het
Tfap2c	T	A	2: 172,391,778 (GRCm39)	N8K	probably benign	Het
Tmem229a	T	C	6: 24,955,580 (GRCm39)	Y58C	probably damaging	Het
Tubgcp3	T	C	8: 12,689,577 (GRCm39)	Y563C	probably damaging	Het
Ubr1	T	A	2: 120,722,593 (GRCm39)	D1342V	probably benign	Het
Usp7	C	T	16: 8,534,374 (GRCm39)		probably null	Het
Wbp1	C	T	6: 83,097,216 (GRCm39)	G75D	probably damaging	Het
Zfp180	G	T	7: 23,804,315 (GRCm39)	V245F	probably benign	Het
Zfp414	C	T	17: 33,849,012 (GRCm39)	T33I	probably damaging	Het
Zfp646	T	A	7: 127,478,530 (GRCm39)	C236S	probably damaging	Het

Other mutations in Prdx1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00654:Prdx1	APN	4	116,550,147 (GRCm39)	missense	probably benign	0.01
IGL00654:Prdx1	APN	4	116,550,162 (GRCm39)	missense	probably benign	0.03
IGL00769:Prdx1	APN	4	116,550,162 (GRCm39)	missense	probably benign	0.03
IGL00851:Prdx1	APN	4	116,550,147 (GRCm39)	missense	probably benign	0.01
IGL02224:Prdx1	APN	4	116,549,064 (GRCm39)	missense	probably damaging	1.00
R1891:Prdx1	UTSW	4	116,556,451 (GRCm39)	makesense	probably null
R2568:Prdx1	UTSW	4	116,550,997 (GRCm39)	missense	probably benign	0.00
R4495:Prdx1	UTSW	4	116,556,416 (GRCm39)	missense	probably benign	0.13
R4971:Prdx1	UTSW	4	116,549,128 (GRCm39)	critical splice donor site	probably null
R5630:Prdx1	UTSW	4	116,556,414 (GRCm39)	missense	probably benign	0.00
R5828:Prdx1	UTSW	4	116,551,006 (GRCm39)	missense	probably damaging	1.00
R7861:Prdx1	UTSW	4	116,550,935 (GRCm39)	missense	probably benign
R8312:Prdx1	UTSW	4	116,556,398 (GRCm39)	missense	possibly damaging	0.83
Z1176:Prdx1	UTSW	4	116,544,678 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AATATGCACTGGTGAGCACAC -3'
(R):5'- AGGGTATTCCTCAGATGTGTTC -3'

Sequencing Primer
(F):5'- CTGGAGCTCACTTTGTAGACCAG -3'
(R):5'- GTTCTGGCTTTTCCAAATAAATGGC -3'

Posted On

2016-11-08