Mutagenetix > Incidental Mutation

Incidental Mutation 'R5860:Marchf7'

453818

Institutional Source

Beutler Lab

Gene Symbol

Marchf7

Ensembl Gene

ENSMUSG00000026977

Gene Name

membrane associated ring-CH-type finger 7

Synonyms

March7, Gtrgeo17, Axot

MMRRC Submission

044072-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.250) question?

Stock #

R5860 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

60040086-60079555 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 60067187 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 569 (I569T)

Ref Sequence

ENSEMBL: ENSMUSP00000099809 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067542] [ENSMUST00000102747] [ENSMUST00000102748]

AlphaFold

Q9WV66

Predicted Effect

probably damaging
Transcript: ENSMUST00000067542
AA Change: I569T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000068961
Gene: ENSMUSG00000026977
AA Change: I569T

Domain	Start	End	E-Value	Type
low complexity region	51	65	N/A	INTRINSIC
low complexity region	76	85	N/A	INTRINSIC
low complexity region	139	152	N/A	INTRINSIC
low complexity region	216	234	N/A	INTRINSIC
low complexity region	286	305	N/A	INTRINSIC
low complexity region	324	338	N/A	INTRINSIC
low complexity region	400	414	N/A	INTRINSIC
low complexity region	451	463	N/A	INTRINSIC
RINGv	553	610	2.11e-21	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000102747
AA Change: I569T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000099808
Gene: ENSMUSG00000026977
AA Change: I569T

Domain	Start	End	E-Value	Type
low complexity region	51	65	N/A	INTRINSIC
low complexity region	76	85	N/A	INTRINSIC
low complexity region	139	152	N/A	INTRINSIC
low complexity region	216	234	N/A	INTRINSIC
low complexity region	286	305	N/A	INTRINSIC
low complexity region	324	338	N/A	INTRINSIC
low complexity region	400	414	N/A	INTRINSIC
low complexity region	451	463	N/A	INTRINSIC
RINGv	553	610	2.11e-21	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000102748
AA Change: I569T

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000099809
Gene: ENSMUSG00000026977
AA Change: I569T

Domain	Start	End	E-Value	Type
low complexity region	51	65	N/A	INTRINSIC
low complexity region	76	85	N/A	INTRINSIC
low complexity region	139	152	N/A	INTRINSIC
low complexity region	216	234	N/A	INTRINSIC
low complexity region	286	305	N/A	INTRINSIC
low complexity region	324	338	N/A	INTRINSIC
low complexity region	400	414	N/A	INTRINSIC
low complexity region	451	463	N/A	INTRINSIC
RINGv	553	610	2.11e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131813

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000134905

Predicted Effect

unknown
Transcript: ENSMUST00000142485
AA Change: I30T

SMART Domains

Protein: ENSMUSP00000116925
Gene: ENSMUSG00000026977
AA Change: I30T

Domain	Start	End	E-Value	Type
RINGv	15	72	2.11e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143806

Meta Mutation Damage Score

0.5027

Coding Region Coverage

1x: 99.9%
3x: 99.4%
10x: 97.1%
20x: 90.8%

Validation Efficiency

97% (75/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] MARCH7 is a member of the MARCH family of membrane-bound E3 ubiquitin ligases (EC 6.3.2.19). MARCH proteins add ubiquitin (see MIM 191339) to target lysines in substrate proteins, thereby signaling their vesicular transport between membrane compartments (Bartee et al., 2004 [PubMed 14722266]).[supplied by OMIM, Mar 2010]
PHENOTYPE: Homozygous null mice show premature neural degeneration and defective development of the corpus callosum. Both T cell proliferation and T cell-derived leukaemia inhibitory factor are increased. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 69 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930568A12Rik	A	G	1: 34,524,661 (GRCm39)		noncoding transcript	Het
A2ml1	T	C	6: 128,518,024 (GRCm39)	T1421A	probably benign	Het
Actr8	T	A	14: 29,708,242 (GRCm39)	Y150*	probably null	Het
Adamts1	A	G	16: 85,595,432 (GRCm39)	C249R	probably damaging	Het
Adgre1	T	A	17: 57,752,034 (GRCm39)	I594N	probably damaging	Het
Atf6	A	T	1: 170,669,344 (GRCm39)	L119H	probably damaging	Het
Atf6	G	A	1: 170,669,345 (GRCm39)	L119F	possibly damaging	Het
B3gat2	G	A	1: 23,854,400 (GRCm39)	W33*	probably null	Het
Bach2	A	G	4: 32,580,268 (GRCm39)	D831G	probably damaging	Het
Ccnk	A	T	12: 108,153,466 (GRCm39)	I76F	probably damaging	Het
Cdyl	A	C	13: 36,042,066 (GRCm39)	K368T	possibly damaging	Het
Chi3l1	A	G	1: 134,112,909 (GRCm39)	T114A	probably benign	Het
Cnppd1	A	G	1: 75,113,131 (GRCm39)	V379A	probably benign	Het
Col11a2	C	A	17: 34,283,159 (GRCm39)		probably benign	Het
Creb3l1	T	C	2: 91,854,399 (GRCm39)	S18G	probably benign	Het
Crybg3	A	C	16: 59,385,632 (GRCm39)	D197E	probably damaging	Het
Cryga	T	C	1: 65,142,527 (GRCm39)		probably benign	Het
Cthrc1	T	C	15: 38,950,080 (GRCm39)	C146R	probably damaging	Het
Cyp2c39	A	T	19: 39,525,270 (GRCm39)	D191V	probably damaging	Het
Dchs1	C	T	7: 105,421,242 (GRCm39)	A393T	probably damaging	Het
Dhx30	G	A	9: 109,913,645 (GRCm39)	T1126I	probably damaging	Het
Dock2	C	T	11: 34,206,562 (GRCm39)	G1345R	probably damaging	Het
Dsc1	T	C	18: 20,228,081 (GRCm39)	E425G	probably damaging	Het
Dynlt2b	A	G	16: 32,247,614 (GRCm39)	Y143C	probably damaging	Het
Exosc8	C	T	3: 54,642,463 (GRCm39)		probably benign	Het
Fat1	C	T	8: 45,504,166 (GRCm39)	A4553V	probably benign	Het
Flnb	T	A	14: 7,931,135 (GRCm38)	L2119Q	probably damaging	Het
Fnbp4	T	A	2: 90,587,826 (GRCm39)	D401E	probably benign	Het
Glyctk	T	C	9: 106,032,906 (GRCm39)	E369G	possibly damaging	Het
Gm14149	C	A	2: 151,066,225 (GRCm39)		noncoding transcript	Het
Golga4	T	C	9: 118,387,174 (GRCm39)	L1432P	probably damaging	Het
Gtpbp4	A	T	13: 9,023,196 (GRCm39)	S623T	probably benign	Het
Insc	A	C	7: 114,390,383 (GRCm39)	S85R	probably damaging	Het
Lgr4	G	A	2: 109,821,496 (GRCm39)	R126H	probably damaging	Het
M1ap	T	A	6: 82,980,795 (GRCm39)	L227Q	probably damaging	Het
Mbd1	C	A	18: 74,409,768 (GRCm39)	C339*	probably null	Het
Moxd2	T	A	6: 40,857,341 (GRCm39)	Y473F	probably damaging	Het
Mrgpra6	T	C	7: 46,839,099 (GRCm39)	H2R	probably benign	Het
Mtus1	T	G	8: 41,529,303 (GRCm39)	L742F	probably damaging	Het
Nek11	A	G	9: 105,270,160 (GRCm39)	Y21H	probably benign	Het
Notch4	G	T	17: 34,801,392 (GRCm39)	C1080F	probably damaging	Het
Nsd3	C	A	8: 26,156,107 (GRCm39)	P558Q	probably damaging	Het
Oas1e	A	T	5: 120,930,015 (GRCm39)	S168T	probably benign	Het
Ogfr	T	C	2: 180,234,285 (GRCm39)	S119P	probably damaging	Het
Or2y15	A	G	11: 49,350,563 (GRCm39)	D19G	probably damaging	Het
Or8g20	T	A	9: 39,395,767 (GRCm39)	M261L	probably benign	Het
Pde4dip	A	G	3: 97,631,504 (GRCm39)	I1135T	possibly damaging	Het
Prex1	G	A	2: 166,486,604 (GRCm39)		probably benign	Het
Ptprf	T	C	4: 118,068,486 (GRCm39)		probably benign	Het
Rapsn	T	C	2: 90,875,859 (GRCm39)	V359A	probably damaging	Het
Ric1	A	G	19: 29,577,245 (GRCm39)	S1050G	possibly damaging	Het
Rnft2	A	G	5: 118,366,868 (GRCm39)	I290T	possibly damaging	Het
Senp7	C	A	16: 55,975,722 (GRCm39)	A476E	possibly damaging	Het
Serpinh1	G	A	7: 98,995,571 (GRCm39)	S337L	probably damaging	Het
Slc5a12	C	A	2: 110,427,969 (GRCm39)	A8D	probably benign	Het
Smg5	T	A	3: 88,250,214 (GRCm39)	C109S	probably damaging	Het
Speer4b	T	C	5: 27,705,226 (GRCm39)	H49R	possibly damaging	Het
Tas2r109	T	C	6: 132,957,664 (GRCm39)	I89V	probably benign	Het
Tet1	A	G	10: 62,648,399 (GRCm39)		probably null	Het
Tmed6	G	T	8: 107,790,786 (GRCm39)	T87K	probably damaging	Het
Tpgs1	G	A	10: 79,505,545 (GRCm39)	G101D	probably damaging	Het
Trim13	T	G	14: 61,842,188 (GRCm39)	S68R	probably damaging	Het
Vwf	A	G	6: 125,620,053 (GRCm39)	N1577S		Het
Vwf	G	T	6: 125,656,228 (GRCm39)		probably benign	Het
Xpr1	T	C	1: 155,207,868 (GRCm39)		probably benign	Het
Ylpm1	C	T	12: 85,087,660 (GRCm39)	P1148L	probably damaging	Het
Zftraf1	A	T	15: 76,532,391 (GRCm39)	I239N	probably damaging	Het
Zftraf1	T	C	15: 76,540,615 (GRCm39)	Y101C	probably damaging	Het
Zscan29	G	T	2: 120,994,518 (GRCm39)	T489N	probably damaging	Het

Other mutations in Marchf7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01761:Marchf7	APN	2	60,064,539 (GRCm39)	missense	probably benign	0.01
IGL02001:Marchf7	APN	2	60,065,235 (GRCm39)	missense	possibly damaging	0.95
IGL02927:Marchf7	APN	2	60,067,262 (GRCm39)	missense	probably damaging	1.00
PIT4687001:Marchf7	UTSW	2	60,062,622 (GRCm39)	missense	probably damaging	1.00
R0379:Marchf7	UTSW	2	60,064,470 (GRCm39)	missense	probably benign	0.00
R1722:Marchf7	UTSW	2	60,064,526 (GRCm39)	missense	probably damaging	1.00
R1755:Marchf7	UTSW	2	60,065,265 (GRCm39)	missense	probably benign
R1759:Marchf7	UTSW	2	60,064,888 (GRCm39)	missense	probably damaging	1.00
R1809:Marchf7	UTSW	2	60,062,637 (GRCm39)	missense	probably benign	0.16
R2018:Marchf7	UTSW	2	60,059,384 (GRCm39)	nonsense	probably null
R2226:Marchf7	UTSW	2	60,060,190 (GRCm39)	missense	probably benign	0.13
R2227:Marchf7	UTSW	2	60,060,190 (GRCm39)	missense	probably benign	0.13
R2471:Marchf7	UTSW	2	60,067,244 (GRCm39)	missense	possibly damaging	0.80
R3724:Marchf7	UTSW	2	60,060,089 (GRCm39)	missense	probably benign	0.10
R4349:Marchf7	UTSW	2	60,064,539 (GRCm39)	missense	probably benign	0.01
R4667:Marchf7	UTSW	2	60,071,394 (GRCm39)	nonsense	probably null
R5365:Marchf7	UTSW	2	60,064,258 (GRCm39)	missense	possibly damaging	0.48
R5524:Marchf7	UTSW	2	60,075,647 (GRCm39)	intron	probably benign
R5883:Marchf7	UTSW	2	60,064,786 (GRCm39)	missense	probably damaging	1.00
R5945:Marchf7	UTSW	2	60,071,331 (GRCm39)	missense	probably damaging	1.00
R5992:Marchf7	UTSW	2	60,075,564 (GRCm39)	missense	probably benign	0.14
R6937:Marchf7	UTSW	2	60,071,310 (GRCm39)	missense	probably damaging	1.00
R6944:Marchf7	UTSW	2	60,064,587 (GRCm39)	missense	probably benign	0.08
R6992:Marchf7	UTSW	2	60,059,428 (GRCm39)	critical splice donor site	probably null
R7337:Marchf7	UTSW	2	60,071,189 (GRCm39)	splice site	probably null
R7448:Marchf7	UTSW	2	60,077,858 (GRCm39)	critical splice donor site	probably null
R7577:Marchf7	UTSW	2	60,060,048 (GRCm39)	nonsense	probably null
R7712:Marchf7	UTSW	2	60,065,334 (GRCm39)	nonsense	probably null
R7863:Marchf7	UTSW	2	60,071,366 (GRCm39)	missense	probably benign	0.35
R8281:Marchf7	UTSW	2	60,064,873 (GRCm39)	missense	probably benign	0.02
R8469:Marchf7	UTSW	2	60,064,670 (GRCm39)	missense	probably benign	0.05
R8745:Marchf7	UTSW	2	60,067,153 (GRCm39)	nonsense	probably null
R8794:Marchf7	UTSW	2	60,074,015 (GRCm39)	critical splice donor site	probably null
R9711:Marchf7	UTSW	2	60,060,175 (GRCm39)	missense	probably damaging	1.00
R9729:Marchf7	UTSW	2	60,064,785 (GRCm39)	nonsense	probably null
R9773:Marchf7	UTSW	2	60,064,785 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTGCCGTACTCCTCAGTAGAAG -3'
(R):5'- AGATGGACTATGTCATAAACACTGG -3'

Sequencing Primer
(F):5'- CGTACTCCTCAGTAGAAGTAGAAATG -3'
(R):5'- CTAAGAGGGTGAATCTTACCA -3'

Posted On

2017-02-10