Mutagenetix > Incidental Mutation

Incidental Mutation 'R7294:Gfpt2'

566631

Institutional Source

Beutler Lab

Gene Symbol

Gfpt2

Ensembl Gene

ENSMUSG00000020363

Gene Name

glutamine fructose-6-phosphate transaminase 2

Synonyms

GFAT2

MMRRC Submission

045399-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7294 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

49685005-49729440 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to T at 49709435 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 209 (R209*)

Ref Sequence

ENSEMBL: ENSMUSP00000020629 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020629]

AlphaFold

Q9Z2Z9

Predicted Effect

probably null
Transcript: ENSMUST00000020629
AA Change: R209*

SMART Domains

Protein: ENSMUSP00000020629
Gene: ENSMUSG00000020363
AA Change: R209*

Domain	Start	End	E-Value	Type
Pfam:GATase_6	72	212	1e-19	PFAM
Pfam:GATase_4	75	206	1.6e-7	PFAM
Pfam:GATase_7	90	209	8.2e-16	PFAM
Pfam:SIS	363	492	1.7e-38	PFAM
Pfam:SIS	534	665	1.2e-29	PFAM

Meta Mutation Damage Score

0.9756

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

94% (49/52)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	T	A	6: 121,650,541 (GRCm39)	Y1216*	probably null	Het
Abca17	G	A	17: 24,539,983 (GRCm39)	T415M	not run	Het
Adam1a	G	T	5: 121,658,068 (GRCm39)	C408*	probably null	Het
Adamts9	G	A	6: 92,871,270 (GRCm39)	T603M	probably damaging	Het
Amdhd1	T	C	10: 93,370,301 (GRCm39)	E179G	probably benign	Het
Bcan	T	C	3: 87,902,831 (GRCm39)	T316A	possibly damaging	Het
Bpifb9a	C	T	2: 154,109,616 (GRCm39)	T504M	probably damaging	Het
C5ar1	T	C	7: 15,982,950 (GRCm39)	I23M	probably benign	Het
Cd109	A	T	9: 78,619,917 (GRCm39)	E1386D	probably damaging	Het
Cdcp1	C	T	9: 123,006,986 (GRCm39)	C587Y	probably benign	Het
Cdh22	A	C	2: 164,984,013 (GRCm39)	V413G	possibly damaging	Het
Cfap44	A	G	16: 44,225,256 (GRCm39)		probably benign	Het
Col2a1	A	G	15: 97,885,168 (GRCm39)		probably null	Het
Col6a3	A	T	1: 90,756,005 (GRCm39)	Y95N	probably damaging	Het
Dusp13b	A	G	14: 21,783,782 (GRCm39)	S178P	possibly damaging	Het
Fhod3	A	G	18: 25,266,037 (GRCm39)	E1575G	probably damaging	Het
Heg1	T	C	16: 33,546,859 (GRCm39)	S573P	probably damaging	Het
Hinfp	A	G	9: 44,210,567 (GRCm39)	C152R	probably damaging	Het
Hmgcs2	C	T	3: 98,198,211 (GRCm39)	T38I	probably benign	Het
Jakmip1	T	C	5: 37,274,804 (GRCm39)	F441L	possibly damaging	Het
Kcnj5	A	C	9: 32,234,045 (GRCm39)	L90R	probably damaging	Het
Kpna4	A	C	3: 68,999,956 (GRCm39)		probably null	Het
Krt15	T	A	11: 100,022,848 (GRCm39)	I456F	possibly damaging	Het
Leprotl1	A	T	8: 34,606,006 (GRCm39)		probably null	Het
Muc4	A	T	16: 32,576,835 (GRCm39)	T42S	possibly damaging	Het
Naa80	T	G	9: 107,460,182 (GRCm39)	F26V	possibly damaging	Het
Nr1h5	T	C	3: 102,852,578 (GRCm39)	T419A	probably benign	Het
Nutm1	G	A	2: 112,080,401 (GRCm39)	R505C	probably damaging	Het
Or4c12	A	C	2: 89,774,068 (GRCm39)	Y130*	probably null	Het
Or52b3	T	A	7: 102,204,160 (GRCm39)	I223N	probably damaging	Het
Pax6	T	A	2: 105,515,246 (GRCm39)	C66*	probably null	Het
Pde10a	A	T	17: 8,975,853 (GRCm39)	N53Y	probably benign	Het
Pdgfra	A	G	5: 75,342,312 (GRCm39)	N711S	probably benign	Het
Rimkla	A	T	4: 119,325,663 (GRCm39)	S249T	probably damaging	Het
Rsf1	CGGCGGCGG	CGGCGGCGGGGGCGGCGG	7: 97,229,127 (GRCm39)		probably benign	Het
Scn3a	A	G	2: 65,302,685 (GRCm39)	S1254P	probably damaging	Het
Slc26a1	G	T	5: 108,821,698 (GRCm39)	R80S	possibly damaging	Het
Slc2a4	T	C	11: 69,836,225 (GRCm39)	D262G	probably benign	Het
Specc1	T	A	11: 62,009,163 (GRCm39)	S226R	probably benign	Het
Srsf4	A	G	4: 131,627,772 (GRCm39)	S289G	unknown	Het
Stil	T	C	4: 114,864,480 (GRCm39)	V127A	probably benign	Het
Syne1	A	T	10: 5,047,483 (GRCm39)		probably null	Het
Tbc1d22a	T	A	15: 86,196,036 (GRCm39)	Y336N	possibly damaging	Het
Tbc1d8	C	T	1: 39,445,843 (GRCm39)	G116E	probably damaging	Het
Thrb	A	G	14: 17,826,963 (GRCm38)		probably benign	Het
Timd5	T	A	11: 46,426,439 (GRCm39)	I182K	probably benign	Het
Tln1	G	T	4: 43,534,399 (GRCm39)	H2253Q	probably benign	Het
Tmem131	A	C	1: 36,893,928 (GRCm39)	N158K	possibly damaging	Het
Toporsl	A	C	4: 52,611,903 (GRCm39)	T599P	probably benign	Het
Tpr	C	T	1: 150,279,638 (GRCm39)	R256C	probably damaging	Het
Triobp	C	T	15: 78,858,176 (GRCm39)	A1259V	probably damaging	Het
Zfp40	A	G	17: 23,395,411 (GRCm39)	I392T	possibly damaging	Het

Other mutations in Gfpt2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00934:Gfpt2	APN	11	49,699,950 (GRCm39)	missense	probably benign	0.00
IGL01451:Gfpt2	APN	11	49,698,517 (GRCm39)	splice site	probably benign
IGL01490:Gfpt2	APN	11	49,717,954 (GRCm39)	splice site	probably benign
IGL01550:Gfpt2	APN	11	49,715,150 (GRCm39)	splice site	probably null
IGL01552:Gfpt2	APN	11	49,695,832 (GRCm39)	nonsense	probably null
IGL02349:Gfpt2	APN	11	49,698,530 (GRCm39)	missense	probably benign	0.02
IGL02815:Gfpt2	APN	11	49,714,084 (GRCm39)	missense	possibly damaging	0.89
plethora	UTSW	11	49,715,268 (GRCm39)	missense	probably damaging	1.00
R0525:Gfpt2	UTSW	11	49,720,602 (GRCm39)	missense	probably benign	0.06
R0539:Gfpt2	UTSW	11	49,723,725 (GRCm39)	missense	probably damaging	1.00
R1055:Gfpt2	UTSW	11	49,718,038 (GRCm39)	missense	probably damaging	1.00
R1178:Gfpt2	UTSW	11	49,714,136 (GRCm39)	missense	probably benign	0.42
R1340:Gfpt2	UTSW	11	49,723,688 (GRCm39)	missense	probably damaging	1.00
R2372:Gfpt2	UTSW	11	49,698,542 (GRCm39)	missense	probably benign	0.00
R4154:Gfpt2	UTSW	11	49,726,605 (GRCm39)	splice site	probably null
R4476:Gfpt2	UTSW	11	49,715,169 (GRCm39)	missense	probably benign	0.17
R4679:Gfpt2	UTSW	11	49,714,564 (GRCm39)	missense	probably benign	0.00
R4863:Gfpt2	UTSW	11	49,701,797 (GRCm39)	missense	probably benign	0.06
R5113:Gfpt2	UTSW	11	49,714,626 (GRCm39)	missense	probably damaging	1.00
R5509:Gfpt2	UTSW	11	49,717,973 (GRCm39)	missense	possibly damaging	0.75
R5830:Gfpt2	UTSW	11	49,699,888 (GRCm39)	missense	probably benign	0.03
R6435:Gfpt2	UTSW	11	49,726,478 (GRCm39)	missense	probably benign	0.00
R7079:Gfpt2	UTSW	11	49,728,578 (GRCm39)	missense	possibly damaging	0.77
R7135:Gfpt2	UTSW	11	49,695,782 (GRCm39)	missense	probably damaging	1.00
R7261:Gfpt2	UTSW	11	49,714,078 (GRCm39)	missense	possibly damaging	0.77
R7384:Gfpt2	UTSW	11	49,701,817 (GRCm39)	missense	possibly damaging	0.56
R7778:Gfpt2	UTSW	11	49,715,268 (GRCm39)	missense	probably damaging	1.00
R7806:Gfpt2	UTSW	11	49,714,142 (GRCm39)	missense	probably benign
R7824:Gfpt2	UTSW	11	49,715,268 (GRCm39)	missense	probably damaging	1.00
R8245:Gfpt2	UTSW	11	49,714,785 (GRCm39)	missense	probably benign	0.01
R8262:Gfpt2	UTSW	11	49,714,607 (GRCm39)	missense	probably benign	0.02
R8437:Gfpt2	UTSW	11	49,695,694 (GRCm39)	intron	probably benign
R8791:Gfpt2	UTSW	11	49,714,043 (GRCm39)	missense	probably benign	0.01
R9072:Gfpt2	UTSW	11	49,714,185 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ATCTGCATGCCAGCCTATTGG -3'
(R):5'- ATTGAAACCTGGAGCCACGAG -3'

Sequencing Primer
(F):5'- CTGCTCCAAAACCAGAGGATGTG -3'
(R):5'- CGAGGCAGCTGGGTTCAAG -3'

Posted On

2019-06-26