Incidental Mutation 'R7373:Recql5'
| ID |
572234 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Recql5
|
| Ensembl Gene |
ENSMUSG00000020752 |
| Gene Name |
RecQ protein-like 5 |
| Synonyms |
Recql5b, Recq5b |
| MMRRC Submission |
045456-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.383)
|
| Stock # |
R7373 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
11 |
| Chromosomal Location |
115783421-115824303 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 115819198 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 123
(T123A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000021097
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000021097]
[ENSMUST00000131578]
[ENSMUST00000134208]
[ENSMUST00000140174]
[ENSMUST00000140991]
|
| AlphaFold |
Q8VID5 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000021097
AA Change: T123A
PolyPhen 2
Score 0.921 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000021097
Gene: ENSMUSG00000020752
AA Change: T123A
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
25 |
230 |
1.13e-29 |
SMART |
|
HELICc
|
274 |
355 |
8.68e-22 |
SMART |
|
Pfam:RecQ_Zn_bind
|
366 |
436 |
1.8e-12 |
PFAM |
|
low complexity region
|
472 |
499 |
N/A |
INTRINSIC |
|
PDB:4BK0|B
|
516 |
621 |
2e-51 |
PDB |
|
Pfam:RecQ5
|
626 |
818 |
3.1e-97 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000131578
|
| SMART Domains |
Protein: ENSMUSP00000136178
Gene: ENSMUSG00000020752
| Domain | Start | End | E-Value | Type |
|---|
|
HELICc
|
1 |
82 |
8.68e-22 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000134208
|
| SMART Domains |
Protein: ENSMUSP00000137157
Gene: ENSMUSG00000020752
| Domain | Start | End | E-Value | Type |
|---|
|
Blast:DEXDc
|
25 |
96 |
4e-34 |
BLAST |
|
HELICc
|
160 |
241 |
8.68e-22 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000140174
AA Change: T123A
PolyPhen 2
Score 0.440 (Sensitivity: 0.89; Specificity: 0.90)
|
| SMART Domains |
Protein: ENSMUSP00000136506
Gene: ENSMUSG00000020752
AA Change: T123A
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
25 |
230 |
1.13e-29 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000140991
|
| SMART Domains |
Protein: ENSMUSP00000114844
Gene: ENSMUSG00000020755
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1qbkb_
|
4 |
81 |
2e-3 |
SMART |
|
Pfam:HCNGP
|
119 |
213 |
6.5e-38 |
PFAM |
|
low complexity region
|
224 |
248 |
N/A |
INTRINSIC |
|
low complexity region
|
263 |
289 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.8%
- 20x: 99.2%
|
| Validation Efficiency |
98% (57/58) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a helicase that is important for genome stability. The encoded protein also prevents aberrant homologous recombination by displacing RAD51 from ssDNA. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2011]
PHENOTYPE: Mice homozygous for disruptions in this gene express elevated levels of sister chromatid exchange due to a failure to suppress crossovers. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 59 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts2 |
G |
A |
11: 50,686,262 (GRCm39) |
A1027T |
probably benign |
Het |
| Aldh7a1 |
G |
A |
18: 56,675,389 (GRCm39) |
T260M |
possibly damaging |
Het |
| Anks3 |
T |
C |
16: 4,773,735 (GRCm39) |
Y187C |
probably benign |
Het |
| Atp2c2 |
A |
T |
8: 120,456,991 (GRCm39) |
I198F |
probably benign |
Het |
| Bsn |
T |
C |
9: 107,990,683 (GRCm39) |
T1690A |
probably damaging |
Het |
| Catsper3 |
T |
C |
13: 55,955,945 (GRCm39) |
I350T |
possibly damaging |
Het |
| Cdcp1 |
C |
T |
9: 123,006,965 (GRCm39) |
R594H |
probably damaging |
Het |
| Cfap57 |
C |
T |
4: 118,472,128 (GRCm39) |
V84I |
probably benign |
Het |
| Cldn1 |
G |
T |
16: 26,179,606 (GRCm39) |
P154T |
probably damaging |
Het |
| Cntnap5a |
A |
T |
1: 116,508,367 (GRCm39) |
N1293I |
probably benign |
Het |
| Cpsf4l |
C |
T |
11: 113,590,657 (GRCm39) |
|
probably null |
Het |
| Crybg1 |
T |
C |
10: 43,880,136 (GRCm39) |
T351A |
probably benign |
Het |
| Csmd1 |
T |
C |
8: 16,042,713 (GRCm39) |
N2340S |
probably damaging |
Het |
| Dennd4a |
C |
A |
9: 64,804,551 (GRCm39) |
Q1297K |
probably benign |
Het |
| Dll3 |
A |
G |
7: 27,994,057 (GRCm39) |
V460A |
probably benign |
Het |
| Dnah8 |
T |
C |
17: 30,986,939 (GRCm39) |
|
probably null |
Het |
| Dst |
G |
T |
1: 34,227,472 (GRCm39) |
L1688F |
probably benign |
Het |
| Ehmt1 |
A |
G |
2: 24,809,585 (GRCm39) |
M1T |
probably null |
Het |
| Fasn |
A |
T |
11: 120,704,802 (GRCm39) |
L1261Q |
possibly damaging |
Het |
| Fat1 |
A |
G |
8: 45,479,702 (GRCm39) |
D2916G |
probably damaging |
Het |
| Fgfr3 |
C |
A |
5: 33,885,034 (GRCm39) |
F49L |
probably benign |
Het |
| Hlx |
T |
C |
1: 184,463,062 (GRCm39) |
T197A |
probably benign |
Het |
| Hormad1 |
A |
T |
3: 95,483,628 (GRCm39) |
T147S |
probably damaging |
Het |
| Igf1r |
T |
A |
7: 67,844,826 (GRCm39) |
Y866* |
probably null |
Het |
| Itgb8 |
A |
G |
12: 119,166,210 (GRCm39) |
V107A |
probably benign |
Het |
| Kat2a |
C |
T |
11: 100,599,392 (GRCm39) |
A533T |
probably benign |
Het |
| Kif20b |
T |
C |
19: 34,913,071 (GRCm39) |
L328P |
probably damaging |
Het |
| Lims1 |
T |
C |
10: 58,245,442 (GRCm39) |
F157S |
probably damaging |
Het |
| Lrp2 |
G |
T |
2: 69,331,036 (GRCm39) |
H1673Q |
probably damaging |
Het |
| Lrrc46 |
C |
A |
11: 96,929,706 (GRCm39) |
M43I |
probably benign |
Het |
| Lrrk2 |
T |
C |
15: 91,584,207 (GRCm39) |
|
probably null |
Het |
| Meox2 |
A |
T |
12: 37,158,797 (GRCm39) |
|
probably benign |
Het |
| Mff |
A |
G |
1: 82,714,838 (GRCm39) |
|
probably null |
Het |
| Mfsd5 |
T |
A |
15: 102,189,427 (GRCm39) |
F266L |
probably damaging |
Het |
| Miga2 |
A |
G |
2: 30,272,083 (GRCm39) |
T468A |
probably damaging |
Het |
| Mmel1 |
T |
A |
4: 154,973,665 (GRCm39) |
L316Q |
not run |
Het |
| Ndufa9 |
C |
A |
6: 126,811,421 (GRCm39) |
G232C |
probably damaging |
Het |
| Obox2 |
A |
T |
7: 15,131,145 (GRCm39) |
K84* |
probably null |
Het |
| Or4f58 |
T |
A |
2: 111,851,787 (GRCm39) |
R137S |
probably benign |
Het |
| Or51a39 |
T |
A |
7: 102,363,306 (GRCm39) |
I105F |
possibly damaging |
Het |
| Otogl |
G |
T |
10: 107,737,112 (GRCm39) |
Q101K |
probably damaging |
Het |
| Pcnx2 |
C |
T |
8: 126,534,766 (GRCm39) |
V1288M |
probably damaging |
Het |
| Pde10a |
T |
A |
17: 9,161,824 (GRCm39) |
W220R |
probably benign |
Het |
| Rpl28 |
T |
C |
7: 4,796,602 (GRCm39) |
V61A |
probably benign |
Het |
| Secisbp2l |
A |
T |
2: 125,599,191 (GRCm39) |
M494K |
probably damaging |
Het |
| Sh3bgr |
G |
A |
16: 96,007,035 (GRCm39) |
E2K |
unknown |
Het |
| Shcbp1l |
C |
A |
1: 153,300,986 (GRCm39) |
T6K |
probably benign |
Het |
| Slc22a15 |
A |
C |
3: 101,785,213 (GRCm39) |
L353R |
possibly damaging |
Het |
| Sqle |
T |
C |
15: 59,189,658 (GRCm39) |
I100T |
probably benign |
Het |
| Tas2r106 |
A |
T |
6: 131,655,317 (GRCm39) |
L178H |
probably damaging |
Het |
| Tll1 |
A |
T |
8: 64,504,391 (GRCm39) |
N668K |
probably damaging |
Het |
| Tm7sf2 |
A |
G |
19: 6,116,676 (GRCm39) |
S118P |
probably benign |
Het |
| Tmco5 |
G |
T |
2: 116,717,226 (GRCm39) |
V169L |
probably benign |
Het |
| Trpv1 |
A |
G |
11: 73,131,499 (GRCm39) |
K346E |
probably damaging |
Het |
| Ttk |
G |
A |
9: 83,736,930 (GRCm39) |
R463H |
probably benign |
Het |
| Vmn2r120 |
G |
T |
17: 57,816,406 (GRCm39) |
L650I |
probably benign |
Het |
| Vmn2r58 |
C |
T |
7: 41,487,212 (GRCm39) |
C561Y |
probably damaging |
Het |
| Vmn2r-ps117 |
A |
T |
17: 19,044,948 (GRCm39) |
Q455L |
probably benign |
Het |
| Zfr |
T |
A |
15: 12,140,645 (GRCm39) |
S231T |
unknown |
Het |
|
| Other mutations in Recql5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01108:Recql5
|
APN |
11 |
115,788,007 (GRCm39) |
missense |
probably benign |
0.04 |
|
IGL01589:Recql5
|
APN |
11 |
115,785,495 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02040:Recql5
|
APN |
11 |
115,823,623 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
IGL02131:Recql5
|
APN |
11 |
115,814,068 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02198:Recql5
|
APN |
11 |
115,785,499 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL02236:Recql5
|
APN |
11 |
115,784,856 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02501:Recql5
|
APN |
11 |
115,785,917 (GRCm39) |
missense |
probably benign |
0.26 |
|
IGL02980:Recql5
|
APN |
11 |
115,784,770 (GRCm39) |
splice site |
probably null |
|
|
IGL03028:Recql5
|
APN |
11 |
115,785,257 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
PIT4581001:Recql5
|
UTSW |
11 |
115,823,682 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R0152:Recql5
|
UTSW |
11 |
115,785,499 (GRCm39) |
missense |
probably benign |
|
|
R0269:Recql5
|
UTSW |
11 |
115,819,050 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R0317:Recql5
|
UTSW |
11 |
115,785,499 (GRCm39) |
missense |
probably benign |
|
|
R0511:Recql5
|
UTSW |
11 |
115,819,209 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0786:Recql5
|
UTSW |
11 |
115,786,628 (GRCm39) |
missense |
probably benign |
|
|
R0975:Recql5
|
UTSW |
11 |
115,814,082 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1170:Recql5
|
UTSW |
11 |
115,788,060 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1208:Recql5
|
UTSW |
11 |
115,783,982 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1208:Recql5
|
UTSW |
11 |
115,783,982 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1807:Recql5
|
UTSW |
11 |
115,785,941 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R1872:Recql5
|
UTSW |
11 |
115,814,135 (GRCm39) |
missense |
probably benign |
0.15 |
|
R1878:Recql5
|
UTSW |
11 |
115,785,927 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1935:Recql5
|
UTSW |
11 |
115,788,017 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1936:Recql5
|
UTSW |
11 |
115,788,017 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1945:Recql5
|
UTSW |
11 |
115,819,123 (GRCm39) |
nonsense |
probably null |
|
|
R2011:Recql5
|
UTSW |
11 |
115,787,923 (GRCm39) |
missense |
probably benign |
0.20 |
|
R2012:Recql5
|
UTSW |
11 |
115,787,923 (GRCm39) |
missense |
probably benign |
0.20 |
|
R2023:Recql5
|
UTSW |
11 |
115,784,466 (GRCm39) |
missense |
probably benign |
|
|
R2183:Recql5
|
UTSW |
11 |
115,787,613 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3881:Recql5
|
UTSW |
11 |
115,784,780 (GRCm39) |
missense |
probably benign |
|
|
R3881:Recql5
|
UTSW |
11 |
115,784,781 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4093:Recql5
|
UTSW |
11 |
115,795,714 (GRCm39) |
missense |
probably benign |
0.05 |
|
R4857:Recql5
|
UTSW |
11 |
115,819,038 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5245:Recql5
|
UTSW |
11 |
115,784,385 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5323:Recql5
|
UTSW |
11 |
115,818,215 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5796:Recql5
|
UTSW |
11 |
115,818,691 (GRCm39) |
intron |
probably benign |
|
|
R6160:Recql5
|
UTSW |
11 |
115,823,613 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6229:Recql5
|
UTSW |
11 |
115,821,540 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R6824:Recql5
|
UTSW |
11 |
115,814,038 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R7013:Recql5
|
UTSW |
11 |
115,785,402 (GRCm39) |
missense |
probably benign |
0.02 |
|
R7043:Recql5
|
UTSW |
11 |
115,821,502 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7135:Recql5
|
UTSW |
11 |
115,821,498 (GRCm39) |
splice site |
probably null |
|
|
R7354:Recql5
|
UTSW |
11 |
115,819,027 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7503:Recql5
|
UTSW |
11 |
115,785,881 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7574:Recql5
|
UTSW |
11 |
115,819,248 (GRCm39) |
missense |
probably benign |
|
|
R7597:Recql5
|
UTSW |
11 |
115,819,207 (GRCm39) |
missense |
probably benign |
0.03 |
|
R7658:Recql5
|
UTSW |
11 |
115,814,102 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8025:Recql5
|
UTSW |
11 |
115,818,938 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8038:Recql5
|
UTSW |
11 |
115,818,178 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R8316:Recql5
|
UTSW |
11 |
115,784,861 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R8463:Recql5
|
UTSW |
11 |
115,787,619 (GRCm39) |
nonsense |
probably null |
|
|
R8770:Recql5
|
UTSW |
11 |
115,787,943 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8788:Recql5
|
UTSW |
11 |
115,786,628 (GRCm39) |
missense |
probably benign |
|
|
R9083:Recql5
|
UTSW |
11 |
115,785,475 (GRCm39) |
missense |
possibly damaging |
0.46 |
|
R9653:Recql5
|
UTSW |
11 |
115,788,032 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9711:Recql5
|
UTSW |
11 |
115,784,367 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0026:Recql5
|
UTSW |
11 |
115,814,087 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0028:Recql5
|
UTSW |
11 |
115,785,432 (GRCm39) |
missense |
probably benign |
|
|
| Predicted Primers |
PCR Primer
(F):5'- AAACACATCCTCTTGAACCTGTG -3'
(R):5'- TGAGATGCTGTGCCGATTGC -3'
Sequencing Primer
(F):5'- TGTAGCCGTCAGAGCCAC -3'
(R):5'- CGATTGCCTGGTCCTGAG -3'
|
| Posted On |
2019-09-13 |
Incidental Mutation