Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01691:Ptpn5'

104119

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Ptpn5

Ensembl Gene

ENSMUSG00000030854

Gene Name

protein tyrosine phosphatase, non-receptor type 5

Synonyms

Step

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL01691

Quality Score

Status

Chromosome

Chromosomal Location

46727543-46783432 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 46732906 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 312 (H312Q)

Ref Sequence

ENSEMBL: ENSMUSP00000099686 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000033142] [ENSMUST00000102626]

AlphaFold

P54830

Predicted Effect

probably benign
Transcript: ENSMUST00000033142
AA Change: H312Q

PolyPhen 2 Score 0.266 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000033142
Gene: ENSMUSG00000030854
AA Change: H312Q

Domain	Start	End	E-Value	Type
low complexity region	26	51	N/A	INTRINSIC
low complexity region	121	138	N/A	INTRINSIC
low complexity region	141	155	N/A	INTRINSIC
PTPc	275	533	2.39e-115	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000102626
AA Change: H312Q

PolyPhen 2 Score 0.266 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000099686
Gene: ENSMUSG00000030854
AA Change: H312Q

Domain	Start	End	E-Value	Type
low complexity region	26	51	N/A	INTRINSIC
low complexity region	121	138	N/A	INTRINSIC
low complexity region	141	155	N/A	INTRINSIC
PTPc	275	533	2.39e-115	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000183776

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000207172

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208324

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000208531

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000209161

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a null allele exhibit normal brain development. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 26 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Actl6a	T	A	3: 32,774,349 (GRCm39)	M282K	possibly damaging	Het
Adam22	T	C	5: 8,142,742 (GRCm39)	N831S	probably damaging	Het
Adamdec1	C	T	14: 68,810,556 (GRCm39)	R200Q	probably damaging	Het
Asb15	A	G	6: 24,567,271 (GRCm39)	I531V	probably benign	Het
Btrc	T	A	19: 45,501,117 (GRCm39)	D223E	probably benign	Het
Ccdc30	T	A	4: 119,250,761 (GRCm39)	E161V	probably damaging	Het
Cd38	G	A	5: 44,060,928 (GRCm39)		probably benign	Het
Clec2d	T	C	6: 129,161,185 (GRCm39)	F94S	probably damaging	Het
Cwf19l1	C	T	19: 44,109,311 (GRCm39)		probably null	Het
Dnah2	A	T	11: 69,430,269 (GRCm39)	N96K	probably benign	Het
Ephb6	G	A	6: 41,591,449 (GRCm39)	R202H	probably benign	Het
Gm43191	T	A	3: 116,471,616 (GRCm39)	I218L	probably benign	Het
Gm7168	G	A	17: 14,169,140 (GRCm39)	S169N	probably damaging	Het
Gm7964	T	C	7: 83,405,344 (GRCm39)		noncoding transcript	Het
Kif20b	T	C	19: 34,913,143 (GRCm39)		probably benign	Het
Kmt2e	A	G	5: 23,702,089 (GRCm39)	T906A	probably benign	Het
Mboat2	A	G	12: 25,004,221 (GRCm39)	N341D	probably damaging	Het
Msh6	T	C	17: 88,292,907 (GRCm39)	V554A	probably benign	Het
Ndc80	T	C	17: 71,815,634 (GRCm39)	T384A	possibly damaging	Het
Or1af1	G	T	2: 37,110,038 (GRCm39)	C179F	probably damaging	Het
Or8g18	G	A	9: 39,149,315 (GRCm39)	T135I	probably benign	Het
Rftn2	C	T	1: 55,253,445 (GRCm39)	V53I	probably damaging	Het
Rgs20	T	C	1: 4,987,145 (GRCm39)	T124A	probably benign	Het
Sox18	T	C	2: 181,313,143 (GRCm39)	S58G	possibly damaging	Het
Togaram2	A	G	17: 72,036,485 (GRCm39)	M1012V	probably null	Het
Usp48	A	T	4: 137,350,583 (GRCm39)		probably null	Het

Other mutations in Ptpn5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01508:Ptpn5	APN	7	46,741,303 (GRCm39)	missense	probably benign	0.00
IGL01557:Ptpn5	APN	7	46,731,636 (GRCm39)	missense	probably damaging	1.00
IGL02051:Ptpn5	APN	7	46,732,507 (GRCm39)	critical splice donor site	probably null
PIT4696001:Ptpn5	UTSW	7	46,738,354 (GRCm39)	missense	probably benign
R0309:Ptpn5	UTSW	7	46,729,042 (GRCm39)	missense	probably damaging	0.97
R0325:Ptpn5	UTSW	7	46,740,507 (GRCm39)	missense	probably benign
R0325:Ptpn5	UTSW	7	46,740,506 (GRCm39)	missense	probably benign
R0414:Ptpn5	UTSW	7	46,732,884 (GRCm39)	missense	probably benign
R0570:Ptpn5	UTSW	7	46,728,681 (GRCm39)	splice site	probably benign
R0885:Ptpn5	UTSW	7	46,738,359 (GRCm39)	missense	probably benign	0.08
R1311:Ptpn5	UTSW	7	46,728,980 (GRCm39)	splice site	probably benign
R1501:Ptpn5	UTSW	7	46,739,623 (GRCm39)	missense	probably benign	0.26
R1772:Ptpn5	UTSW	7	46,740,516 (GRCm39)	missense	probably benign	0.00
R1815:Ptpn5	UTSW	7	46,728,589 (GRCm39)	missense	probably benign
R1913:Ptpn5	UTSW	7	46,728,616 (GRCm39)	missense	possibly damaging	0.92
R2109:Ptpn5	UTSW	7	46,735,807 (GRCm39)	missense	probably damaging	0.99
R2112:Ptpn5	UTSW	7	46,732,890 (GRCm39)	missense	probably benign	0.00
R2184:Ptpn5	UTSW	7	46,738,350 (GRCm39)	missense	probably damaging	0.99
R4244:Ptpn5	UTSW	7	46,741,296 (GRCm39)	nonsense	probably null
R4551:Ptpn5	UTSW	7	46,740,600 (GRCm39)	intron	probably benign
R5353:Ptpn5	UTSW	7	46,731,642 (GRCm39)	missense	probably benign	0.03
R5897:Ptpn5	UTSW	7	46,729,262 (GRCm39)	missense	probably benign	0.41
R6442:Ptpn5	UTSW	7	46,732,831 (GRCm39)	splice site	probably null
R7549:Ptpn5	UTSW	7	46,735,874 (GRCm39)	critical splice acceptor site	probably null
R7960:Ptpn5	UTSW	7	46,729,295 (GRCm39)	missense	possibly damaging	0.85
R9308:Ptpn5	UTSW	7	46,740,569 (GRCm39)	missense	probably benign	0.07
R9580:Ptpn5	UTSW	7	46,732,622 (GRCm39)	missense	probably damaging	1.00
Z1176:Ptpn5	UTSW	7	46,735,870 (GRCm39)	missense	probably damaging	1.00

Posted On

2014-01-21