Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02957:Podxl'

365199

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Podxl

Ensembl Gene

ENSMUSG00000025608

Gene Name

podocalyxin-like

Synonyms

podocalyxin, PC, Pclp1, Podxl1, Ly102

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL02957

Quality Score

Status

Chromosome

Chromosomal Location

31496428-31540872 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 31505384 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000026698 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026698]

AlphaFold

Q9R0M4

Predicted Effect

probably benign
Transcript: ENSMUST00000026698

SMART Domains

Protein: ENSMUSP00000026698
Gene: ENSMUSG00000025608

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
low complexity region	61	91	N/A	INTRINSIC
low complexity region	104	130	N/A	INTRINSIC
low complexity region	196	208	N/A	INTRINSIC
low complexity region	265	278	N/A	INTRINSIC
Pfam:CD34_antigen	301	503	6e-76	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136877

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit neonatal lethality and severe kidney defects including absence of the podocyte slit diaphragm and foot processes and anuria. While a subset display edema and/or omphalocele, most mice appear normal at birth. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abi2	A	G	1: 60,509,945 (GRCm39)	D262G	probably damaging	Het
Abtb3	T	A	10: 85,469,701 (GRCm39)	M405K	probably damaging	Het
Abtb3	C	T	10: 85,467,150 (GRCm39)		probably benign	Het
Ahcyl1	G	T	3: 107,574,958 (GRCm39)	Q462K	probably damaging	Het
C8b	A	G	4: 104,623,652 (GRCm39)	T20A	probably benign	Het
Casd1	T	A	6: 4,634,068 (GRCm39)	Y594N	possibly damaging	Het
Crtc2	C	T	3: 90,169,840 (GRCm39)	P412L	probably damaging	Het
Cyp3a44	T	A	5: 145,716,472 (GRCm39)	R373*	probably null	Het
Dnah10	A	G	5: 124,840,197 (GRCm39)	D1277G	probably benign	Het
Dnah2	A	T	11: 69,339,333 (GRCm39)	V3058E	possibly damaging	Het
Eif3l	T	C	15: 78,974,028 (GRCm39)	L481P	probably benign	Het
Fbxw7	A	T	3: 84,883,544 (GRCm39)	T573S	probably benign	Het
Fcgbp	C	A	7: 27,791,272 (GRCm39)	Y844*	probably null	Het
Fcrl2	C	A	3: 87,169,501 (GRCm39)	V13F	possibly damaging	Het
Gbx2	T	G	1: 89,858,375 (GRCm39)	S35R	probably benign	Het
H2-M9	A	G	17: 36,953,049 (GRCm39)	L86S	probably benign	Het
Hebp1	C	T	6: 135,114,990 (GRCm39)	G157D	probably benign	Het
Igf2bp3	C	A	6: 49,064,338 (GRCm39)	V560L	probably benign	Het
Igsf10	A	G	3: 59,238,285 (GRCm39)	I632T	probably damaging	Het
Kcnab2	A	T	4: 152,520,326 (GRCm39)	S5T	possibly damaging	Het
Kcnh5	T	C	12: 75,054,439 (GRCm39)	S502G	probably benign	Het
Lpcat2	T	A	8: 93,602,212 (GRCm39)	Y224*	probably null	Het
Mcrip2	A	G	17: 26,087,499 (GRCm39)	V24A	probably damaging	Het
Mttp	T	C	3: 137,814,842 (GRCm39)	K493E	possibly damaging	Het
Myl7	A	G	11: 5,847,137 (GRCm39)	S139P	possibly damaging	Het
Npepps	C	T	11: 97,133,478 (GRCm39)	R268H	probably damaging	Het
Oas1c	C	T	5: 120,943,478 (GRCm39)	W18*	probably null	Het
Or10ak7	G	T	4: 118,791,316 (GRCm39)	T241N	probably damaging	Het
P4ha3	T	C	7: 99,968,112 (GRCm39)		probably benign	Het
Pate14	G	T	9: 36,549,146 (GRCm39)	T38K	probably benign	Het
Pkd1l2	G	A	8: 117,792,484 (GRCm39)	T436I	probably benign	Het
Pkhd1l1	T	A	15: 44,376,304 (GRCm39)	W989R	probably damaging	Het
Pot1b	T	C	17: 56,007,009 (GRCm39)	Y36C	probably damaging	Het
Ppme1	A	T	7: 99,987,647 (GRCm39)	I103K	possibly damaging	Het
Ppp1r12a	T	C	10: 108,034,779 (GRCm39)	I108T	probably damaging	Het
Pramel1	A	G	4: 143,124,168 (GRCm39)	H281R	probably benign	Het
Prep	T	C	10: 45,002,126 (GRCm39)	V427A	probably benign	Het
Prkce	A	G	17: 86,803,454 (GRCm39)	D451G	possibly damaging	Het
Prrc2c	A	G	1: 162,534,104 (GRCm39)		probably benign	Het
Ramacl	A	T	13: 67,056,277 (GRCm39)		probably benign	Het
Rrm2	A	G	12: 24,758,440 (GRCm39)	N32S	probably damaging	Het
Sema6a	A	G	18: 47,382,291 (GRCm39)	L752P	probably damaging	Het
Sik3	T	A	9: 46,107,143 (GRCm39)	I429N	possibly damaging	Het
Slc22a29	A	G	19: 8,147,354 (GRCm39)	L336P	probably benign	Het
Stk32a	A	T	18: 43,445,057 (GRCm39)	M284L	probably benign	Het
Syde2	T	C	3: 145,694,934 (GRCm39)		probably benign	Het
Tcta	G	A	9: 108,182,531 (GRCm39)	S91F	possibly damaging	Het
Traf3ip2	A	T	10: 39,530,406 (GRCm39)	T517S	probably damaging	Het
Trpv3	A	G	11: 73,176,698 (GRCm39)	Y359C	probably damaging	Het
Vmn1r66	A	G	7: 10,008,737 (GRCm39)	S99P	probably damaging	Het
Vmn2r8	G	A	5: 108,950,091 (GRCm39)	T252M	probably benign	Het
Wdr27	A	T	17: 15,130,372 (GRCm39)		probably benign	Het
Yipf1	A	G	4: 107,193,347 (GRCm39)	T78A	probably damaging	Het
Zfp735	A	T	11: 73,601,755 (GRCm39)	Y233F	probably benign	Het

Other mutations in Podxl

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01081:Podxl	APN	6	31,505,639 (GRCm39)	missense	possibly damaging	0.53
IGL01576:Podxl	APN	6	31,501,319 (GRCm39)	missense	probably damaging	1.00
IGL02151:Podxl	APN	6	31,501,394 (GRCm39)	missense	possibly damaging	0.65
IGL02240:Podxl	APN	6	31,501,933 (GRCm39)	missense	probably damaging	1.00
IGL02487:Podxl	APN	6	31,499,957 (GRCm39)	makesense	probably null
IGL02598:Podxl	APN	6	31,501,355 (GRCm39)	missense	probably damaging	1.00
R2042:Podxl	UTSW	6	31,500,051 (GRCm39)	missense	possibly damaging	0.75
R3840:Podxl	UTSW	6	31,500,016 (GRCm39)	missense	probably damaging	1.00
R4675:Podxl	UTSW	6	31,503,579 (GRCm39)	missense	possibly damaging	0.95
R5509:Podxl	UTSW	6	31,503,548 (GRCm39)	missense	probably benign	0.00
R5754:Podxl	UTSW	6	31,501,329 (GRCm39)	missense	probably damaging	1.00
R5876:Podxl	UTSW	6	31,505,391 (GRCm39)	critical splice donor site	probably null
R6242:Podxl	UTSW	6	31,503,180 (GRCm39)	missense	probably benign	0.30
R6376:Podxl	UTSW	6	31,505,432 (GRCm39)	missense	probably benign	0.00
R6493:Podxl	UTSW	6	31,501,981 (GRCm39)	missense	probably damaging	1.00
R7113:Podxl	UTSW	6	31,501,668 (GRCm39)	critical splice acceptor site	probably null
R7299:Podxl	UTSW	6	31,501,371 (GRCm39)	missense	probably damaging	1.00
R7301:Podxl	UTSW	6	31,501,371 (GRCm39)	missense	probably damaging	1.00
R7338:Podxl	UTSW	6	31,505,941 (GRCm39)	missense	unknown
R7358:Podxl	UTSW	6	31,501,929 (GRCm39)	missense	probably benign	0.03
R8799:Podxl	UTSW	6	31,501,400 (GRCm39)	missense	probably damaging	1.00
Z1176:Podxl	UTSW	6	31,505,569 (GRCm39)	missense	probably damaging	0.98
Z1177:Podxl	UTSW	6	31,505,459 (GRCm39)	missense	possibly damaging	0.65

Posted On

2015-12-18