Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL03268:Rnf25'

415177

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Rnf25

Ensembl Gene

ENSMUSG00000026171

Gene Name

ring finger protein 25

Synonyms

AO7, 0610009H16Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL03268

Quality Score

Status

Chromosome

Chromosomal Location

74632907-74640556 bp(-) (GRCm39)

Type of Mutation

unclassified

DNA Base Change (assembly)

A to T at 74638217 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000140912 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027357] [ENSMUST00000087183] [ENSMUST00000087186] [ENSMUST00000113694] [ENSMUST00000113721] [ENSMUST00000127938] [ENSMUST00000132081] [ENSMUST00000135140] [ENSMUST00000154874] [ENSMUST00000148456] [ENSMUST00000189830]

AlphaFold

Q9QZR0

Predicted Effect

probably benign
Transcript: ENSMUST00000027357

SMART Domains

Protein: ENSMUSP00000027357
Gene: ENSMUSG00000026171

Domain	Start	End	E-Value	Type
RWD	18	127	4.66e-31	SMART
RING	134	198	2.87e-5	SMART
low complexity region	368	378	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000087183

SMART Domains

Protein: ENSMUSP00000084430
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
S_TKc	4	254	5.24e-100	SMART
low complexity region	405	419	N/A	INTRINSIC
low complexity region	472	485	N/A	INTRINSIC
low complexity region	705	718	N/A	INTRINSIC
low complexity region	826	836	N/A	INTRINSIC
low complexity region	852	860	N/A	INTRINSIC
low complexity region	900	914	N/A	INTRINSIC
low complexity region	956	969	N/A	INTRINSIC
low complexity region	994	1009	N/A	INTRINSIC
low complexity region	1014	1030	N/A	INTRINSIC
Pfam:HEAT_2	1112	1218	7.8e-11	PFAM
Pfam:HEAT_2	1158	1259	3e-11	PFAM
Pfam:HEAT_EZ	1207	1261	4.3e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000087186

SMART Domains

Protein: ENSMUSP00000084433
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
S_TKc	4	254	5.24e-100	SMART
low complexity region	405	419	N/A	INTRINSIC
low complexity region	577	590	N/A	INTRINSIC
low complexity region	698	708	N/A	INTRINSIC
low complexity region	724	732	N/A	INTRINSIC
low complexity region	772	786	N/A	INTRINSIC
low complexity region	828	841	N/A	INTRINSIC
low complexity region	866	881	N/A	INTRINSIC
low complexity region	886	902	N/A	INTRINSIC
Pfam:HEAT_2	984	1090	2.9e-10	PFAM
Pfam:HEAT_2	1026	1131	9.6e-11	PFAM
Pfam:HEAT_EZ	1039	1092	2.2e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113694

SMART Domains

Protein: ENSMUSP00000109324
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
Pfam:Pkinase	4	145	1.6e-46	PFAM
Pfam:Pkinase_Tyr	4	145	3.3e-29	PFAM
Pfam:YrbL-PhoP_reg	17	143	7.1e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000113721

SMART Domains

Protein: ENSMUSP00000109350
Gene: ENSMUSG00000026171

Domain	Start	End	E-Value	Type
RWD	18	127	4.66e-31	SMART
RING	134	197	3.53e-5	SMART
low complexity region	367	377	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000127938

SMART Domains

Protein: ENSMUSP00000116973
Gene: ENSMUSG00000026171

Domain	Start	End	E-Value	Type
RING	23	87	2.87e-5	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000128491

Predicted Effect

probably benign
Transcript: ENSMUST00000132081

Predicted Effect

probably benign
Transcript: ENSMUST00000136078

SMART Domains

Protein: ENSMUSP00000117692
Gene: ENSMUSG00000026171

Domain	Start	End	E-Value	Type
RWD	24	123	1.97e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000135140

Predicted Effect

probably benign
Transcript: ENSMUST00000154874

SMART Domains

Protein: ENSMUSP00000120646
Gene: ENSMUSG00000026171

Domain	Start	End	E-Value	Type
RWD	1	94	6.36e-15	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149649

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000145673

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151003

Predicted Effect

probably benign
Transcript: ENSMUST00000148456

SMART Domains

Protein: ENSMUSP00000120020
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
S_TKc	4	254	5.24e-100	SMART
low complexity region	405	419	N/A	INTRINSIC
low complexity region	472	485	N/A	INTRINSIC
low complexity region	705	718	N/A	INTRINSIC
low complexity region	826	836	N/A	INTRINSIC
low complexity region	852	860	N/A	INTRINSIC
low complexity region	898	912	N/A	INTRINSIC
low complexity region	954	967	N/A	INTRINSIC
low complexity region	992	1007	N/A	INTRINSIC
low complexity region	1012	1028	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000189830

SMART Domains

Protein: ENSMUSP00000140912
Gene: ENSMUSG00000033276

Domain	Start	End	E-Value	Type
Pfam:Pkinase	1	56	8.1e-8	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a RING finger motif. The mouse counterpart of this protein has been shown to interact with Rela, the p65 subunit of NF-kappaB (NFKB), and modulate NFKB-mediated transcription activity. The mouse protein also binds ubiquitin-conjugating enzymes (E2s) and is a substrate for E2-dependent ubiquitination. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1500002C15Rik	G	T	4: 155,818,648 (GRCm39)		probably benign	Het
Acvrl1	A	T	15: 101,033,803 (GRCm39)	I162F	possibly damaging	Het
Adprhl1	A	G	8: 13,296,170 (GRCm39)		probably benign	Het
Anapc7	G	A	5: 122,567,669 (GRCm39)		probably null	Het
Ankrd13a	T	C	5: 114,930,296 (GRCm39)	L227P	probably damaging	Het
Anxa5	T	C	3: 36,504,828 (GRCm39)	I245V	probably benign	Het
Arf1	A	T	11: 59,103,663 (GRCm39)	V123E	possibly damaging	Het
Catsperg1	G	A	7: 28,899,668 (GRCm39)	R338C	probably damaging	Het
Cc2d1a	A	C	8: 84,860,154 (GRCm39)	L855R	probably damaging	Het
Cdh18	G	A	15: 23,366,953 (GRCm39)	A220T	probably damaging	Het
Cep350	T	C	1: 155,829,295 (GRCm39)	H203R	probably benign	Het
Cep78	G	T	19: 15,951,806 (GRCm39)	S333*	probably null	Het
Chrna2	T	A	14: 66,388,395 (GRCm39)		probably benign	Het
Dact1	T	C	12: 71,364,257 (GRCm39)	V346A	probably damaging	Het
Dcn	A	G	10: 97,319,240 (GRCm39)	I6V	probably benign	Het
Dlg3	A	G	X: 99,853,493 (GRCm39)	Y600C	probably damaging	Het
Dmd	A	G	X: 82,849,814 (GRCm39)	E1084G	probably damaging	Het
Epb41	A	C	4: 131,655,806 (GRCm39)	D825E	probably damaging	Het
Galc	T	A	12: 98,188,852 (GRCm39)		probably benign	Het
Hmcn1	T	A	1: 150,648,261 (GRCm39)	D675V	probably damaging	Het
Igkv2-137	A	G	6: 67,533,092 (GRCm39)	D85G	probably benign	Het
Kxd1	A	G	8: 70,961,136 (GRCm39)	I78T	probably damaging	Het
Lama1	G	A	17: 68,111,531 (GRCm39)	G2261R	probably damaging	Het
Lama2	A	T	10: 27,298,649 (GRCm39)	I149N	probably damaging	Het
Mbnl2	G	T	14: 120,616,569 (GRCm39)	C61F	probably damaging	Het
Mcts1	T	C	X: 37,690,859 (GRCm39)	I22T	possibly damaging	Het
Or4k15b	T	C	14: 50,272,024 (GRCm39)	T279A	probably damaging	Het
Or52e3	T	G	7: 102,869,848 (GRCm39)	F308V	probably benign	Het
Pde12	T	A	14: 26,389,614 (GRCm39)	E365V	probably benign	Het
Prl8a2	A	G	13: 27,537,938 (GRCm39)	K204R	probably benign	Het
Rragb	A	G	X: 151,923,493 (GRCm39)	D5G	unknown	Het
Rsrc2	T	A	5: 123,878,790 (GRCm39)	K56*	probably null	Het
Scn5a	T	C	9: 119,350,297 (GRCm39)	Q859R	probably damaging	Het
Septin4	G	A	11: 87,480,529 (GRCm39)	V388M	probably damaging	Het
Slc29a2	C	T	19: 5,074,531 (GRCm39)		probably benign	Het
Slc30a5	G	A	13: 100,943,211 (GRCm39)	T549I	probably damaging	Het
Slc7a2	A	G	8: 41,365,554 (GRCm39)	T462A	probably benign	Het
Spsb2	A	G	6: 124,786,450 (GRCm39)	E61G	probably damaging	Het
Srr	A	G	11: 74,803,943 (GRCm39)	Y5H	probably benign	Het
Suclg2	T	C	6: 95,546,573 (GRCm39)	D301G	probably damaging	Het
Syt14	A	G	1: 192,669,142 (GRCm39)	V37A	probably benign	Het
Syt9	A	G	7: 107,035,612 (GRCm39)	N210D	probably benign	Het
Tenm3	T	C	8: 48,688,558 (GRCm39)	D2343G	probably damaging	Het
Tma7	A	G	9: 108,907,450 (GRCm39)		probably benign	Het
Tor3a	T	C	1: 156,497,020 (GRCm39)	D175G	probably damaging	Het
Tpo	G	T	12: 30,144,964 (GRCm39)	A595D	possibly damaging	Het
Tpst2	T	C	5: 112,456,091 (GRCm39)	V210A	probably damaging	Het
Uchl1	A	T	5: 66,839,824 (GRCm39)	E122V	probably benign	Het
Vmn1r210	A	T	13: 23,011,405 (GRCm39)	F294I	probably benign	Het

Other mutations in Rnf25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02542:Rnf25	APN	1	74,633,260 (GRCm39)	missense	probably benign	0.02
R1570:Rnf25	UTSW	1	74,634,426 (GRCm39)	missense	probably damaging	1.00
R1740:Rnf25	UTSW	1	74,637,886 (GRCm39)	missense	probably damaging	1.00
R2086:Rnf25	UTSW	1	74,633,126 (GRCm39)	missense	probably damaging	0.99
R2939:Rnf25	UTSW	1	74,635,047 (GRCm39)	missense	possibly damaging	0.50
R2940:Rnf25	UTSW	1	74,635,047 (GRCm39)	missense	possibly damaging	0.50
R4556:Rnf25	UTSW	1	74,638,264 (GRCm39)	missense	probably damaging	1.00
R4770:Rnf25	UTSW	1	74,633,099 (GRCm39)	missense	probably damaging	1.00
R5075:Rnf25	UTSW	1	74,634,803 (GRCm39)	missense	probably benign
R5394:Rnf25	UTSW	1	74,634,411 (GRCm39)	missense	probably damaging	1.00
R6319:Rnf25	UTSW	1	74,634,890 (GRCm39)	missense	probably damaging	1.00
R6960:Rnf25	UTSW	1	74,634,403 (GRCm39)	missense	possibly damaging	0.66
R8039:Rnf25	UTSW	1	74,633,123 (GRCm39)	missense	probably damaging	0.98

Posted On

2016-08-02