Incidental Mutation 'IGL01704:Hltf'
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Hltf
Ensembl Gene ENSMUSG00000002428
Gene Namehelicase-like transcription factor
SynonymsP113, Snf2l3, Smarca3
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL01704
Quality Score
Chromosomal Location20057811-20118490 bp(+) (GRCm38)
Type of Mutationsplice site
DNA Base Change (assembly) T to C at 20083746 bp
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000118775 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000002502] [ENSMUST00000143005] [ENSMUST00000145853]
Predicted Effect probably benign
Transcript: ENSMUST00000002502
SMART Domains Protein: ENSMUSP00000002502
Gene: ENSMUSG00000002428

HIRAN 60 154 3.78e-29 SMART
DEXDc 236 608 1.26e-32 SMART
RING 754 794 4.41e-6 SMART
low complexity region 814 828 N/A INTRINSIC
HELICc 859 944 2.24e-15 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128127
Predicted Effect probably benign
Transcript: ENSMUST00000143005
SMART Domains Protein: ENSMUSP00000116570
Gene: ENSMUSG00000002428

HIRAN 60 154 3.78e-29 SMART
DEXDc 236 610 2.36e-23 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000145853
SMART Domains Protein: ENSMUSP00000118775
Gene: ENSMUSG00000002428

HIRAN 1 92 2.7e-25 SMART
DEXDc 174 548 2.36e-23 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the SWI/SNF family. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein contains a RING finger DNA binding motif. Two transcript variants encoding the same protein have been found for this gene. However, use of an alternative translation start site produces an isoform that is truncated at the N-terminus compared to the full-length protein. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit neonatal lethality, spongiform encephalopathy with increased brain apoptosis, and hypoglycemia. Mice homozygous for a different knock-out allele fail to show fluoxetine-induced neurogenesis and behavioral responses. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 32 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Brsk1 A G 7: 4,704,261 E271G probably benign Het
Card9 A G 2: 26,356,862 F325L probably benign Het
Cct8l1 T A 5: 25,517,099 S271T probably benign Het
Clca2 A G 3: 145,095,218 Y125H probably benign Het
Csn1s2b T G 5: 87,813,111 S25R probably damaging Het
Dnmt1 C T 9: 20,910,180 V1227I probably damaging Het
Fpr1 G A 17: 17,876,972 R252W possibly damaging Het
Gm15155 T A X: 156,303,256 D69E unknown Het
Hnrnpr A G 4: 136,329,381 I130V possibly damaging Het
Klra9 G T 6: 130,189,781 S40* probably null Het
Ldoc1 C A X: 61,709,931 Y74* probably null Het
Lias G T 5: 65,405,330 V318F probably damaging Het
Mtss1 A G 15: 59,055,083 V48A possibly damaging Het
Myo9b C T 8: 71,359,642 P2019L probably damaging Het
Ogdhl T C 14: 32,337,631 probably benign Het
Olfr1447 T C 19: 12,901,739 I14V probably benign Het
Parp4 A G 14: 56,602,326 D497G probably damaging Het
Pcnx3 T C 19: 5,667,476 D1535G probably damaging Het
Pcx G T 19: 4,621,060 K1103N probably damaging Het
Pdgfd G A 9: 6,337,327 V220M probably damaging Het
Pola2 A G 19: 5,942,019 S542P probably damaging Het
Ppip5k1 G A 2: 121,312,074 T1278M possibly damaging Het
Pramef6 C T 4: 143,895,631 D385N probably benign Het
Ralgapb T C 2: 158,420,875 V11A possibly damaging Het
Rhox2f T A X: 37,571,981 V124E probably benign Het
Rnf213 T C 11: 119,449,876 probably null Het
Slc38a10 T C 11: 120,151,087 probably benign Het
Smco1 T C 16: 32,273,886 V125A probably benign Het
Tg A T 15: 66,671,351 Q38L probably damaging Het
Trpv5 A T 6: 41,653,258 S633T possibly damaging Het
Vmn2r97 T C 17: 18,947,811 F776L probably damaging Het
Zranb3 A C 1: 127,967,939 V724G possibly damaging Het
Other mutations in Hltf
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00650:Hltf APN 3 20105632 splice site probably benign
IGL01461:Hltf APN 3 20099939 nonsense probably null
IGL01630:Hltf APN 3 20082904 splice site probably benign
IGL02059:Hltf APN 3 20106457 missense probably benign
IGL02105:Hltf APN 3 20092757 missense probably damaging 1.00
IGL02156:Hltf APN 3 20092807 missense possibly damaging 0.61
IGL02870:Hltf APN 3 20099873 missense probably damaging 0.98
IGL02899:Hltf APN 3 20099817 missense probably damaging 1.00
IGL02935:Hltf APN 3 20069051 missense probably damaging 1.00
IGL02950:Hltf APN 3 20076572 missense probably benign 0.07
IGL03082:Hltf APN 3 20064559 splice site probably benign
snarky UTSW 3 20109487 critical splice donor site probably null
R0068:Hltf UTSW 3 20059090 missense probably damaging 1.00
R0787:Hltf UTSW 3 20106446 missense probably damaging 1.00
R0905:Hltf UTSW 3 20108869 critical splice donor site probably null
R0980:Hltf UTSW 3 20091501 missense probably benign 0.00
R1741:Hltf UTSW 3 20086188 missense probably damaging 1.00
R1748:Hltf UTSW 3 20076521 missense probably benign 0.13
R1799:Hltf UTSW 3 20105691 missense probably damaging 1.00
R1976:Hltf UTSW 3 20106446 missense probably damaging 1.00
R2171:Hltf UTSW 3 20059081 missense probably damaging 1.00
R2395:Hltf UTSW 3 20092742 missense probably benign 0.41
R2444:Hltf UTSW 3 20063907 missense possibly damaging 0.66
R3789:Hltf UTSW 3 20069047 missense probably damaging 1.00
R3943:Hltf UTSW 3 20092744 missense probably damaging 1.00
R4719:Hltf UTSW 3 20064701 critical splice donor site probably null
R4793:Hltf UTSW 3 20063950 missense possibly damaging 0.79
R5296:Hltf UTSW 3 20108112 missense probably damaging 0.99
R5449:Hltf UTSW 3 20069083 missense possibly damaging 0.92
R5492:Hltf UTSW 3 20098067 splice site probably null
R6012:Hltf UTSW 3 20058934 missense probably damaging 1.00
R6157:Hltf UTSW 3 20076496 missense probably benign 0.13
R6254:Hltf UTSW 3 20063829 missense possibly damaging 0.85
R6553:Hltf UTSW 3 20072394 missense probably damaging 0.96
R6616:Hltf UTSW 3 20109487 critical splice donor site probably null
R6696:Hltf UTSW 3 20065306 intron probably null
R6761:Hltf UTSW 3 20083832 critical splice donor site probably null
R6781:Hltf UTSW 3 20098166 missense probably benign 0.00
X0027:Hltf UTSW 3 20067389 missense probably damaging 0.96
Posted On2014-01-21