Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00496:Nckap1'

12752

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Nckap1

Ensembl Gene

ENSMUSG00000027002

Gene Name

NCK-associated protein 1

Synonyms

Hem-2, Hem2, Nap1, H19, mh19

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL00496

Quality Score

Status

Chromosome

Chromosomal Location

80330856-80411526 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 80336546 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 1057 (I1057F)

Ref Sequence

ENSEMBL: ENSMUSP00000107390 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028386] [ENSMUST00000111760]

AlphaFold

P28660

Predicted Effect

possibly damaging
Transcript: ENSMUST00000028386
AA Change: I1051F

PolyPhen 2 Score 0.488 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000028386
Gene: ENSMUSG00000027002
AA Change: I1051F

Domain	Start	End	E-Value	Type
Pfam:Nckap1	8	1124	N/A	PFAM

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111760
AA Change: I1057F

PolyPhen 2 Score 0.869 (Sensitivity: 0.83; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000107390
Gene: ENSMUSG00000027002
AA Change: I1057F

Domain	Start	End	E-Value	Type
Pfam:Nckap1	9	1128	N/A	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000154793

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene exhibit growth arrest at midgestation, an open neural tube, cardia bifida, defective foregut development, defects in endoderm and mesoderm migration and sometimes duplication of the anteroposterior body axis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 29 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	G	A	3: 89,960,400 (GRCm39)	V14M	possibly damaging	Het
Adgrg6	C	A	10: 14,326,322 (GRCm39)		probably null	Het
Ankmy1	A	G	1: 92,813,988 (GRCm39)	L397P	probably damaging	Het
Atp6v1c1	A	G	15: 38,687,100 (GRCm39)	K232E	probably damaging	Het
Cnfn	G	T	7: 25,067,385 (GRCm39)		probably benign	Het
Copb2	A	G	9: 98,452,371 (GRCm39)	T52A	probably benign	Het
Daw1	A	C	1: 83,174,957 (GRCm39)	L152F	probably damaging	Het
Gpr87	A	T	3: 59,087,211 (GRCm39)	I98K	probably damaging	Het
Il17a	G	A	1: 20,802,507 (GRCm39)	R72H	probably damaging	Het
Lmtk2	A	G	5: 144,111,512 (GRCm39)	Q744R	probably benign	Het
Micall1	G	A	15: 78,999,221 (GRCm39)		probably benign	Het
Micall2	T	C	5: 139,702,083 (GRCm39)	T387A	probably benign	Het
Nr1h3	T	C	2: 91,020,544 (GRCm39)	D263G	probably damaging	Het
Nrip1	A	T	16: 76,090,591 (GRCm39)	V322E	possibly damaging	Het
Pck1	T	C	2: 172,995,911 (GRCm39)		probably null	Het
Ppp3r2	A	G	4: 49,681,773 (GRCm39)	I59T	possibly damaging	Het
Pradc1	A	G	6: 85,424,948 (GRCm39)		probably null	Het
Psmd14	A	G	2: 61,591,026 (GRCm39)	Y32C	probably damaging	Het
Rrp12	A	C	19: 41,866,466 (GRCm39)		probably null	Het
Scaf8	A	T	17: 3,221,409 (GRCm39)	I299F	unknown	Het
Selenoo	A	G	15: 88,979,875 (GRCm39)	D341G	probably damaging	Het
Slc1a6	C	A	10: 78,629,142 (GRCm39)	N186K	probably damaging	Het
Smarcc2	T	A	10: 128,298,924 (GRCm39)	S102R	probably damaging	Het
Stambpl1	T	A	19: 34,217,430 (GRCm39)	V423E	probably damaging	Het
Svep1	A	C	4: 58,069,001 (GRCm39)	C2928W	possibly damaging	Het
Tmed9	T	C	13: 55,741,334 (GRCm39)	Y43H	probably benign	Het
Ttn	T	C	2: 76,571,091 (GRCm39)	T24855A	possibly damaging	Het
Usp7	A	G	16: 8,512,977 (GRCm39)	V795A	probably damaging	Het
Wdr17	A	C	8: 55,112,614 (GRCm39)		probably benign	Het

Other mutations in Nckap1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00896:Nckap1	APN	2	80,411,297 (GRCm39)	missense	possibly damaging	0.59
IGL01343:Nckap1	APN	2	80,350,186 (GRCm39)	missense	possibly damaging	0.81
IGL01593:Nckap1	APN	2	80,350,914 (GRCm39)	missense	probably benign	0.06
IGL01677:Nckap1	APN	2	80,360,641 (GRCm39)	missense	probably benign	0.04
IGL01873:Nckap1	APN	2	80,383,729 (GRCm39)	missense	possibly damaging	0.95
IGL01874:Nckap1	APN	2	80,355,980 (GRCm39)	missense	probably damaging	1.00
IGL01947:Nckap1	APN	2	80,339,097 (GRCm39)	missense	probably damaging	1.00
IGL02268:Nckap1	APN	2	80,358,962 (GRCm39)	missense	probably benign	0.16
IGL02348:Nckap1	APN	2	80,348,326 (GRCm39)	missense	probably damaging	1.00
IGL03349:Nckap1	APN	2	80,355,904 (GRCm39)	missense	probably benign	0.07
PIT4151001:Nckap1	UTSW	2	80,350,714 (GRCm39)	critical splice donor site	probably null
R0326:Nckap1	UTSW	2	80,383,714 (GRCm39)	missense	probably benign	0.41
R0345:Nckap1	UTSW	2	80,375,321 (GRCm39)	splice site	probably benign
R0520:Nckap1	UTSW	2	80,371,874 (GRCm39)	splice site	probably benign
R0603:Nckap1	UTSW	2	80,343,073 (GRCm39)	missense	probably benign	0.19
R0924:Nckap1	UTSW	2	80,384,593 (GRCm39)	missense	probably benign	0.34
R0930:Nckap1	UTSW	2	80,384,593 (GRCm39)	missense	probably benign	0.34
R0964:Nckap1	UTSW	2	80,378,243 (GRCm39)	critical splice donor site	probably null
R1122:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1123:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1124:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1125:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1127:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1182:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1234:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1236:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1384:Nckap1	UTSW	2	80,364,014 (GRCm39)	missense	possibly damaging	0.90
R1402:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1402:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1511:Nckap1	UTSW	2	80,383,759 (GRCm39)	missense	probably damaging	0.99
R1677:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1686:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1687:Nckap1	UTSW	2	80,350,929 (GRCm39)	missense	probably damaging	0.96
R1717:Nckap1	UTSW	2	80,343,014 (GRCm39)	splice site	probably benign
R1789:Nckap1	UTSW	2	80,350,900 (GRCm39)	missense	probably benign	0.44
R1822:Nckap1	UTSW	2	80,348,242 (GRCm39)	missense	possibly damaging	0.58
R1840:Nckap1	UTSW	2	80,332,594 (GRCm39)	missense	possibly damaging	0.88
R1926:Nckap1	UTSW	2	80,337,182 (GRCm39)	missense	probably damaging	1.00
R1968:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R1970:Nckap1	UTSW	2	80,348,286 (GRCm39)	missense	probably benign	0.12
R2027:Nckap1	UTSW	2	80,365,862 (GRCm39)	missense	probably damaging	1.00
R2063:Nckap1	UTSW	2	80,400,494 (GRCm39)	missense	probably damaging	1.00
R2504:Nckap1	UTSW	2	80,360,562 (GRCm39)	missense	probably benign	0.40
R3824:Nckap1	UTSW	2	80,370,904 (GRCm39)	missense	possibly damaging	0.72
R4784:Nckap1	UTSW	2	80,337,278 (GRCm39)	missense	probably benign	0.15
R4908:Nckap1	UTSW	2	80,353,718 (GRCm39)	critical splice donor site	probably null
R5077:Nckap1	UTSW	2	80,379,277 (GRCm39)	missense	probably damaging	0.99
R5311:Nckap1	UTSW	2	80,370,466 (GRCm39)	missense	probably damaging	1.00
R5439:Nckap1	UTSW	2	80,343,034 (GRCm39)	missense	possibly damaging	0.81
R6141:Nckap1	UTSW	2	80,360,551 (GRCm39)	missense	probably damaging	1.00
R6209:Nckap1	UTSW	2	80,355,946 (GRCm39)	missense	probably damaging	1.00
R6226:Nckap1	UTSW	2	80,339,125 (GRCm39)	missense	possibly damaging	0.96
R6294:Nckap1	UTSW	2	80,371,858 (GRCm39)	missense	probably benign	0.03
R6458:Nckap1	UTSW	2	80,342,893 (GRCm39)	splice site	probably null
R6937:Nckap1	UTSW	2	80,339,060 (GRCm39)	missense	probably damaging	1.00
R6986:Nckap1	UTSW	2	80,350,911 (GRCm39)	missense	probably benign	0.03
R7180:Nckap1	UTSW	2	80,337,236 (GRCm39)	missense	probably benign	0.01
R7208:Nckap1	UTSW	2	80,370,542 (GRCm39)	missense	probably benign	0.24
R7363:Nckap1	UTSW	2	80,370,512 (GRCm39)	missense	probably damaging	1.00
R7448:Nckap1	UTSW	2	80,354,885 (GRCm39)	missense	probably damaging	1.00
R7513:Nckap1	UTSW	2	80,332,635 (GRCm39)	missense	possibly damaging	0.81
R7806:Nckap1	UTSW	2	80,371,843 (GRCm39)	missense	probably damaging	0.98
R8143:Nckap1	UTSW	2	80,336,530 (GRCm39)	missense	possibly damaging	0.93
R8270:Nckap1	UTSW	2	80,355,008 (GRCm39)	missense	possibly damaging	0.82
R8775:Nckap1	UTSW	2	80,375,410 (GRCm39)	missense	probably benign	0.00
R8775-TAIL:Nckap1	UTSW	2	80,375,410 (GRCm39)	missense	probably benign	0.00
R8886:Nckap1	UTSW	2	80,339,055 (GRCm39)	critical splice donor site	probably null
R8913:Nckap1	UTSW	2	80,401,564 (GRCm39)	missense	possibly damaging	0.51
R9080:Nckap1	UTSW	2	80,350,726 (GRCm39)	missense	probably damaging	1.00
R9287:Nckap1	UTSW	2	80,383,750 (GRCm39)	missense	possibly damaging	0.68
R9722:Nckap1	UTSW	2	80,401,568 (GRCm39)	nonsense	probably null
R9749:Nckap1	UTSW	2	80,401,568 (GRCm39)	nonsense	probably null
Z1176:Nckap1	UTSW	2	80,370,852 (GRCm39)	critical splice donor site	probably null

Posted On

2012-12-06