Mutagenetix > Incidental Mutation

Incidental Mutation 'R1480:Mgat5'

164255

Institutional Source

Beutler Lab

Gene Symbol

Mgat5

Ensembl Gene

ENSMUSG00000036155

Gene Name

mannoside acetylglucosaminyltransferase 5

Synonyms

4930471A21Rik, 5330407H02Rik, GlcNAc-TV, beta1,6N-acetylglucosaminyltransferase V

MMRRC Submission

039533-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1480 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

127132450-127413760 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 127387716 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 557 (R557S)

Ref Sequence

ENSEMBL: ENSMUSP00000129166 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038361] [ENSMUST00000171405]

AlphaFold

Q8R4G6

Predicted Effect

probably damaging
Transcript: ENSMUST00000038361
AA Change: R557S

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000038359
Gene: ENSMUSG00000036155
AA Change: R557S

Domain	Start	End	E-Value	Type
Pfam:DUF4525	2	138	3.4e-70	PFAM
Pfam:Glyco_transf_18	171	725	9.8e-268	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000171405
AA Change: R557S

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000129166
Gene: ENSMUSG00000036155
AA Change: R557S

Domain	Start	End	E-Value	Type
Pfam:DUF4525	3	137	9.3e-64	PFAM
Pfam:Glyco_transf_18	171	725	1.9e-268	PFAM

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.0%
20x: 94.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene belongs to the glycosyltransferase family. It catalyzes the addition of beta-1,6-N-acetylglucosamine to the alpha-linked mannose of biantennary N-linked oligosaccharides present on the newly synthesized glycoproteins. It is one of the most important enzymes involved in the regulation of the biosynthesis of glycoprotein oligosaccharides. Alterations of the oligosaccharides on cell surface glycoproteins cause significant changes in the adhesive or migratory behavior of a cell. Increase in the activity of this enzyme has been correlated with the progression of invasive malignancies. [provided by RefSeq, Oct 2011]
PHENOTYPE: Mice homozygous for deficiencies in this gene have immune system abnormalities and reduced cancer growth and metastasis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	C	T	2: 25,323,409 (GRCm39)	R126C	possibly damaging	Het
Abcb9	C	A	5: 124,216,889 (GRCm39)	A443S	probably benign	Het
Adcy3	A	G	12: 4,262,171 (GRCm39)	M1074V	probably damaging	Het
Adnp	A	G	2: 168,025,454 (GRCm39)	Y614H	probably damaging	Het
Agbl4	G	A	4: 111,423,914 (GRCm39)	M313I	possibly damaging	Het
AI987944	T	C	7: 41,024,343 (GRCm39)	D212G	probably benign	Het
Anxa2	TCCC	TCC	9: 69,397,036 (GRCm39)		probably null	Het
Aplp1	A	G	7: 30,135,448 (GRCm39)	S537P	probably benign	Het
Arap2	T	A	5: 62,826,472 (GRCm39)	R1031*	probably null	Het
Arid1a	A	G	4: 133,407,700 (GRCm39)	M2269T	unknown	Het
Ash1l	C	A	3: 88,892,359 (GRCm39)	P1413T	probably damaging	Het
Auh	G	A	13: 52,989,532 (GRCm39)	P308L	probably benign	Het
B3gnt5	A	T	16: 19,588,617 (GRCm39)	I279L	probably damaging	Het
Camkk2	T	C	5: 122,872,341 (GRCm39)		probably null	Het
Ccdc158	T	C	5: 92,796,903 (GRCm39)	K478E	probably damaging	Het
Ces1f	T	C	8: 94,000,782 (GRCm39)	I121V	probably benign	Het
Chad	A	T	11: 94,455,963 (GRCm39)		probably benign	Het
Col6a1	T	C	10: 76,545,752 (GRCm39)	I907V	unknown	Het
Cpe	T	A	8: 65,047,969 (GRCm39)	T432S	probably benign	Het
Csmd3	T	C	15: 47,595,325 (GRCm39)	T1941A	possibly damaging	Het
Dennd3	G	A	15: 73,404,695 (GRCm39)	V257I	probably benign	Het
Dnajc21	T	C	15: 10,460,037 (GRCm39)		probably null	Het
Dqx1	A	G	6: 83,036,433 (GRCm39)	R146G	possibly damaging	Het
Etf1	T	C	18: 35,042,276 (GRCm39)	E261G	probably damaging	Het
Fermt2	C	T	14: 45,699,244 (GRCm39)	V617I	possibly damaging	Het
Gabarap	T	C	11: 69,882,551 (GRCm39)	Y5H	probably damaging	Het
Gdap1	A	G	1: 17,215,781 (GRCm39)	Y29C	probably damaging	Het
Gimap5	A	G	6: 48,729,964 (GRCm39)	E178G	probably damaging	Het
Gpatch1	C	T	7: 35,002,763 (GRCm39)	G249E	probably damaging	Het
Gse1	T	G	8: 121,299,133 (GRCm39)		probably benign	Het
Kifc3	T	C	8: 95,836,515 (GRCm39)	D82G	probably damaging	Het
Kit	G	A	5: 75,797,977 (GRCm39)	D422N	probably benign	Het
Klhl28	A	T	12: 65,003,995 (GRCm39)	F173I	probably damaging	Het
Klk1b22	A	G	7: 43,766,278 (GRCm39)	D253G	possibly damaging	Het
Lias	T	A	5: 65,549,634 (GRCm39)	H39Q	probably benign	Het
Lrp1b	T	A	2: 40,793,401 (GRCm39)	D2504V	probably damaging	Het
Mrpl54	T	C	10: 81,101,489 (GRCm39)	T91A	probably benign	Het
Myh3	T	A	11: 66,984,371 (GRCm39)	D1069E	possibly damaging	Het
Nek1	T	A	8: 61,577,360 (GRCm39)		probably null	Het
Nfyc	A	C	4: 120,625,921 (GRCm39)		probably null	Het
Nol7	A	T	13: 43,552,104 (GRCm39)	E75V	probably damaging	Het
Nomo1	T	A	7: 45,710,337 (GRCm39)	V606E	probably damaging	Het
Npat	TGGTAAAA	T	9: 53,474,366 (GRCm39)		probably null	Het
Nt5c1b	A	G	12: 10,424,886 (GRCm39)	E142G	probably damaging	Het
Ogdh	A	T	11: 6,297,827 (GRCm39)		probably null	Het
Or1o4	A	G	17: 37,590,636 (GRCm39)	V225A	probably benign	Het
Parg	A	T	14: 31,931,585 (GRCm39)	K402*	probably null	Het
Patj	G	A	4: 98,357,819 (GRCm39)	G695E	probably damaging	Het
Pde3a	G	A	6: 141,433,300 (GRCm39)	S777N	probably benign	Het
Phactr2	G	A	10: 13,129,536 (GRCm39)	P174L	possibly damaging	Het
Phtf1	C	T	3: 103,894,750 (GRCm39)	R113*	probably null	Het
Pik3r4	G	T	9: 105,564,443 (GRCm39)	V1346L	probably benign	Het
Prkcb	T	C	7: 122,193,865 (GRCm39)	W525R	probably damaging	Het
Prl8a1	C	T	13: 27,758,055 (GRCm39)	R218H	possibly damaging	Het
Pum3	T	C	19: 27,376,310 (GRCm39)	E536G	probably benign	Het
Rb1	T	C	14: 73,500,042 (GRCm39)	N535S	probably benign	Het
Rbm7	G	T	9: 48,401,016 (GRCm39)	D237E	probably benign	Het
Ripor1	T	C	8: 106,342,180 (GRCm39)	V122A	probably damaging	Het
Sdhc	C	T	1: 170,973,370 (GRCm39)	R11H	probably benign	Het
Sema3c	A	G	5: 17,887,029 (GRCm39)	N360S	possibly damaging	Het
Serpinb5	T	A	1: 106,809,437 (GRCm39)	M281K	probably benign	Het
Serpinc1	A	G	1: 160,822,889 (GRCm39)	E210G	probably benign	Het
Shoc2	T	C	19: 53,976,202 (GRCm39)	S31P	probably benign	Het
Sult2a3	T	A	7: 13,856,836 (GRCm39)	N28I	possibly damaging	Het
Svil	C	T	18: 5,057,345 (GRCm39)	P598S	probably damaging	Het
Tacc3	G	A	5: 33,821,941 (GRCm39)	V234I	probably benign	Het
Tacr1	A	T	6: 82,469,511 (GRCm39)	M132L	possibly damaging	Het
Tas2r104	C	A	6: 131,662,257 (GRCm39)	V151F	probably benign	Het
Tbc1d10b	C	T	7: 126,802,950 (GRCm39)	S326N	probably benign	Het
Trim12c	C	T	7: 103,997,451 (GRCm39)	C35Y	probably damaging	Het
Trrap	T	C	5: 144,755,123 (GRCm39)	I2067T	probably benign	Het
Upk1a	T	C	7: 30,306,311 (GRCm39)	I152V	probably benign	Het
Vmn2r39	T	G	7: 9,017,955 (GRCm39)	T794P	probably damaging	Het
Wnk2	G	A	13: 49,210,708 (GRCm39)	P1704S	probably damaging	Het
Zfp609	T	C	9: 65,610,593 (GRCm39)	E790G	possibly damaging	Het
Zmym1	G	T	4: 126,942,405 (GRCm39)	T563K	probably damaging	Het
Zranb1	T	A	7: 132,551,745 (GRCm39)	F132Y	probably benign	Het
Zranb3	C	T	1: 128,019,599 (GRCm39)	A48T	probably damaging	Het

Other mutations in Mgat5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00479:Mgat5	APN	1	127,315,204 (GRCm39)	missense	probably damaging	1.00
IGL00813:Mgat5	APN	1	127,312,543 (GRCm39)	missense	probably benign
IGL01795:Mgat5	APN	1	127,396,968 (GRCm39)	missense	probably damaging	0.98
IGL01830:Mgat5	APN	1	127,339,869 (GRCm39)	missense	probably damaging	1.00
IGL01879:Mgat5	APN	1	127,325,287 (GRCm39)	missense	probably damaging	0.99
IGL02322:Mgat5	APN	1	127,310,722 (GRCm39)	missense	probably benign	0.00
IGL02621:Mgat5	APN	1	127,325,326 (GRCm39)	missense	possibly damaging	0.86
IGL02695:Mgat5	APN	1	127,339,868 (GRCm39)	missense	probably damaging	1.00
IGL03142:Mgat5	APN	1	127,339,960 (GRCm39)	missense	probably damaging	1.00
Cowlick	UTSW	1	127,399,301 (GRCm39)	missense	probably benign	0.36
Curls	UTSW	1	127,248,371 (GRCm39)	missense	possibly damaging	0.77
R0518:Mgat5	UTSW	1	127,312,584 (GRCm39)	missense	probably damaging	1.00
R0594:Mgat5	UTSW	1	127,339,985 (GRCm39)	missense	probably damaging	0.96
R1501:Mgat5	UTSW	1	127,325,378 (GRCm39)	critical splice donor site	probably null
R1712:Mgat5	UTSW	1	127,248,375 (GRCm39)	missense	probably benign	0.34
R1744:Mgat5	UTSW	1	127,407,206 (GRCm39)	missense	probably damaging	1.00
R1862:Mgat5	UTSW	1	127,387,706 (GRCm39)	missense	probably damaging	1.00
R1994:Mgat5	UTSW	1	127,387,696 (GRCm39)	missense	possibly damaging	0.82
R2054:Mgat5	UTSW	1	127,325,344 (GRCm39)	missense	probably damaging	1.00
R2150:Mgat5	UTSW	1	127,396,987 (GRCm39)	missense	probably damaging	1.00
R2303:Mgat5	UTSW	1	127,374,036 (GRCm39)	missense	probably benign	0.00
R2566:Mgat5	UTSW	1	127,234,741 (GRCm39)	missense	probably benign	0.01
R3498:Mgat5	UTSW	1	127,312,571 (GRCm39)	missense	possibly damaging	0.55
R3788:Mgat5	UTSW	1	127,294,180 (GRCm39)	missense	probably benign
R4674:Mgat5	UTSW	1	127,318,495 (GRCm39)	missense	probably damaging	1.00
R4873:Mgat5	UTSW	1	127,396,986 (GRCm39)	missense	probably damaging	1.00
R4875:Mgat5	UTSW	1	127,396,986 (GRCm39)	missense	probably damaging	1.00
R5175:Mgat5	UTSW	1	127,387,649 (GRCm39)	missense	probably damaging	0.97
R5310:Mgat5	UTSW	1	127,315,251 (GRCm39)	critical splice donor site	probably null
R5337:Mgat5	UTSW	1	127,387,658 (GRCm39)	missense	possibly damaging	0.84
R5597:Mgat5	UTSW	1	127,325,303 (GRCm39)	missense	probably damaging	1.00
R5599:Mgat5	UTSW	1	127,325,303 (GRCm39)	missense	probably damaging	1.00
R5861:Mgat5	UTSW	1	127,315,129 (GRCm39)	missense	probably damaging	1.00
R5956:Mgat5	UTSW	1	127,310,676 (GRCm39)	missense	probably benign	0.10
R6042:Mgat5	UTSW	1	127,387,636 (GRCm39)	missense	probably damaging	1.00
R6223:Mgat5	UTSW	1	127,310,716 (GRCm39)	missense	possibly damaging	0.86
R6492:Mgat5	UTSW	1	127,399,301 (GRCm39)	missense	probably benign	0.36
R6662:Mgat5	UTSW	1	127,396,974 (GRCm39)	missense	probably damaging	1.00
R6960:Mgat5	UTSW	1	127,248,371 (GRCm39)	missense	possibly damaging	0.77
R6981:Mgat5	UTSW	1	127,318,588 (GRCm39)	missense	probably damaging	0.98
R7110:Mgat5	UTSW	1	127,310,716 (GRCm39)	missense	possibly damaging	0.92
R7133:Mgat5	UTSW	1	127,292,926 (GRCm39)	missense	probably benign
R7142:Mgat5	UTSW	1	127,339,924 (GRCm39)	missense	probably damaging	1.00
R7151:Mgat5	UTSW	1	127,373,999 (GRCm39)	missense	probably damaging	0.97
R7506:Mgat5	UTSW	1	127,294,192 (GRCm39)	missense	probably benign	0.24
R7790:Mgat5	UTSW	1	127,339,941 (GRCm39)	missense	probably benign	0.23
R7980:Mgat5	UTSW	1	127,407,248 (GRCm39)	missense	probably benign	0.13
R8548:Mgat5	UTSW	1	127,248,409 (GRCm39)	missense	possibly damaging	0.77
R9008:Mgat5	UTSW	1	127,407,308 (GRCm39)	missense	probably damaging	1.00
R9127:Mgat5	UTSW	1	127,294,197 (GRCm39)	missense	probably benign	0.14
R9279:Mgat5	UTSW	1	127,325,348 (GRCm39)	missense	probably damaging	1.00
R9599:Mgat5	UTSW	1	127,248,445 (GRCm39)	missense	probably benign	0.02
X0028:Mgat5	UTSW	1	127,294,222 (GRCm39)	missense	possibly damaging	0.91
Z1177:Mgat5	UTSW	1	127,410,429 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTTGTCGCAAGTCACCCACCTG -3'
(R):5'- TGAGCATGAGAACCTGTGTGGAAC -3'

Sequencing Primer
(F):5'- AGGCAGTCTGACTGGTATCTCC -3'
(R):5'- actcctccacacacgcc -3'

Posted On

2014-03-28