Mutagenetix > Incidental Mutation

Incidental Mutation 'R1636:Scamp5'

173173

Institutional Source

Beutler Lab

Gene Symbol

Scamp5

Ensembl Gene

ENSMUSG00000040722

Gene Name

secretory carrier membrane protein 5

Synonyms

Sc5

MMRRC Submission

039672-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R1636 (G1)

Quality Score

221

Status

Validated

Chromosome

Chromosomal Location

57348610-57375343 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 57358692 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 28 (D28G)

Ref Sequence

ENSEMBL: ENSMUSP00000149622 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046587] [ENSMUST00000213771] [ENSMUST00000214256] [ENSMUST00000215059] [ENSMUST00000215734]

AlphaFold

Q9JKD3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000046587
AA Change: D28G

PolyPhen 2 Score 0.503 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000035898
Gene: ENSMUSG00000040722
AA Change: D28G

Domain	Start	End	E-Value	Type
Pfam:SCAMP	5	179	2.1e-69	PFAM
low complexity region	201	218	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000213771
AA Change: D28G

PolyPhen 2 Score 0.799 (Sensitivity: 0.84; Specificity: 0.93)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000214256
AA Change: D28G

PolyPhen 2 Score 0.503 (Sensitivity: 0.88; Specificity: 0.90)

Predicted Effect

silent
Transcript: ENSMUST00000215059

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000215208

Predicted Effect

probably benign
Transcript: ENSMUST00000215734
AA Change: D28G

PolyPhen 2 Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)

Meta Mutation Damage Score

0.7441

Coding Region Coverage

1x: 98.9%
3x: 97.8%
10x: 94.4%
20x: 86.1%

Validation Efficiency

96% (85/89)

MGI Phenotype

FUNCTION: This gene encodes a member of the Scamp (secretory carrier membrane protein) family. The encoded protein may be involved in neuronal vesicle trafficking. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]

Allele List at MGI

Other mutations in this stock

Total: 78 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	C	A	6: 121,631,571 (GRCm39)	L623M	probably benign	Het
Abca7	A	G	10: 79,844,832 (GRCm39)	H1518R	probably benign	Het
Adam4	A	G	12: 81,466,464 (GRCm39)	L719S	probably damaging	Het
Adprm	T	C	11: 66,932,549 (GRCm39)	Y120C	possibly damaging	Het
Arhgap25	T	A	6: 87,472,923 (GRCm39)	Y78F	probably damaging	Het
Asap1	G	A	15: 63,995,761 (GRCm39)	P665L	probably damaging	Het
Bank1	T	C	3: 135,788,987 (GRCm39)	K637R	probably damaging	Het
Bcr	T	A	10: 74,966,898 (GRCm39)	L502M	probably damaging	Het
Brwd1	A	G	16: 95,860,841 (GRCm39)	L315P	probably damaging	Het
Btbd7	A	T	12: 102,760,110 (GRCm39)	Y613N	probably damaging	Het
Cdca7l	G	A	12: 117,840,663 (GRCm39)	R395H	probably damaging	Het
Cftr	T	A	6: 18,226,156 (GRCm39)	I368K	probably damaging	Het
D6Wsu163e	T	C	6: 126,923,564 (GRCm39)	V150A	possibly damaging	Het
Ddx52	A	G	11: 83,846,169 (GRCm39)	T470A	probably damaging	Het
Def6	A	G	17: 28,442,892 (GRCm39)	E316G	possibly damaging	Het
Dip2a	A	T	10: 76,157,412 (GRCm39)	N64K	probably benign	Het
Dlgap4	G	T	2: 156,587,997 (GRCm39)	E631*	probably null	Het
Dner	T	C	1: 84,563,051 (GRCm39)	K190E	possibly damaging	Het
Eif2b4	T	A	5: 31,349,610 (GRCm39)		probably null	Het
Eif3a	A	T	19: 60,770,343 (GRCm39)	D119E	possibly damaging	Het
Ercc2	C	T	7: 19,121,049 (GRCm39)	T276M	possibly damaging	Het
Exoc1	A	G	5: 76,715,965 (GRCm39)	K830R	probably benign	Het
F2r	G	T	13: 95,740,400 (GRCm39)	Y378*	probably null	Het
Fam186a	G	A	15: 99,839,539 (GRCm39)	T2235I	unknown	Het
Fmo3	T	G	1: 162,781,994 (GRCm39)	K453T	probably benign	Het
Fzd3	A	T	14: 65,490,555 (GRCm39)	D9E	probably benign	Het
Galns	A	G	8: 123,330,955 (GRCm39)		probably benign	Het
Gm1818	T	C	12: 48,602,550 (GRCm39)		noncoding transcript	Het
Gm9955	C	A	18: 24,842,287 (GRCm39)		probably benign	Het
Immp2l	T	C	12: 41,750,470 (GRCm39)	V113A	probably damaging	Het
Iyd	T	A	10: 3,495,588 (GRCm39)	M82K	possibly damaging	Het
Kif21a	A	T	15: 90,869,008 (GRCm39)		probably benign	Het
Lipf	A	G	19: 33,953,935 (GRCm39)	D342G	probably damaging	Het
Lmbrd1	C	A	1: 24,786,011 (GRCm39)	Y435*	probably null	Het
Mpped1	C	T	15: 83,676,191 (GRCm39)		probably benign	Het
Mtrf1l	A	G	10: 5,763,265 (GRCm39)	S355P	probably damaging	Het
Ndn	C	T	7: 61,998,256 (GRCm39)	P34L	probably benign	Het
Neo1	T	C	9: 58,820,560 (GRCm39)	S788G	probably damaging	Het
Nfx1	T	G	4: 41,016,072 (GRCm39)		probably null	Het
Nlrp4c	T	C	7: 6,069,737 (GRCm39)	V546A	possibly damaging	Het
Nwd2	G	A	5: 63,964,900 (GRCm39)	V1495M	probably damaging	Het
Oaf	T	A	9: 43,150,621 (GRCm39)	I84F	probably benign	Het
Obscn	A	G	11: 59,013,463 (GRCm39)	F1153S	probably damaging	Het
Ofcc1	A	T	13: 40,333,904 (GRCm39)	C396S	possibly damaging	Het
Omg	A	G	11: 79,393,166 (GRCm39)	S231P	probably benign	Het
Or51a7	T	G	7: 102,614,898 (GRCm39)	I197S	possibly damaging	Het
Or8g35	T	C	9: 39,381,215 (GRCm39)	D269G	probably benign	Het
Pdcl3	A	G	1: 39,034,016 (GRCm39)	T53A	possibly damaging	Het
Pik3r2	A	T	8: 71,224,542 (GRCm39)	H244Q	probably benign	Het
Pinx1	A	T	14: 64,103,586 (GRCm39)	H55L	probably damaging	Het
Pwwp2b	T	A	7: 138,834,758 (GRCm39)	H66Q	probably benign	Het
Rell2	A	G	18: 38,091,132 (GRCm39)	D99G	probably damaging	Het
Reln	G	A	5: 22,203,681 (GRCm39)	A1191V	probably damaging	Het
Rprm	T	C	2: 53,975,316 (GRCm39)	M1V	probably null	Het
Sav1	A	C	12: 70,031,269 (GRCm39)	H84Q	probably benign	Het
Selenbp2	G	A	3: 94,604,122 (GRCm39)	G9D	probably damaging	Het
Sh3tc2	T	C	18: 62,122,792 (GRCm39)	W518R	probably damaging	Het
Slc10a6	A	T	5: 103,777,012 (GRCm39)	N29K	probably benign	Het
Spindoc	C	A	19: 7,351,922 (GRCm39)	D142Y	probably damaging	Het
Spink12	T	A	18: 44,240,795 (GRCm39)	D60E	probably benign	Het
Sugt1	A	G	14: 79,825,422 (GRCm39)	I23V	probably benign	Het
Syne2	T	C	12: 76,051,506 (GRCm39)	C4079R	probably benign	Het
Tex15	T	G	8: 34,066,415 (GRCm39)	Y1948*	probably null	Het
Thoc2l	T	A	5: 104,668,616 (GRCm39)	M1046K	probably damaging	Het
Tln2	T	C	9: 67,213,814 (GRCm39)	E321G	probably damaging	Het
Tmem198b	A	G	10: 128,638,065 (GRCm39)	L166P	probably damaging	Het
Tspear	T	A	10: 77,706,253 (GRCm39)	L341H	possibly damaging	Het
Ttn	T	A	2: 76,730,566 (GRCm39)		probably benign	Het
Unc13a	G	A	8: 72,106,034 (GRCm39)	T690I	probably damaging	Het
Ush2a	T	C	1: 188,198,373 (GRCm39)	I1479T	possibly damaging	Het
Vcan	G	A	13: 89,851,786 (GRCm39)	T1058I	possibly damaging	Het
Vmn1r84	T	C	7: 12,096,522 (GRCm39)	Q45R	probably benign	Het
Vmn2r111	T	C	17: 22,790,380 (GRCm39)	N209D	probably damaging	Het
Wbp1l	A	G	19: 46,632,883 (GRCm39)	Y40C	probably damaging	Het
Wdr72	A	T	9: 74,086,907 (GRCm39)	H625L	probably benign	Het
Zeb2	T	C	2: 44,892,623 (GRCm39)	Y195C	probably damaging	Het
Zkscan6	C	T	11: 65,705,256 (GRCm39)		probably benign	Het
Zmym6	C	A	4: 127,017,560 (GRCm39)	H1022N	probably damaging	Het

Other mutations in Scamp5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02691:Scamp5	APN	9	57,358,660 (GRCm39)	missense	probably damaging	1.00
R2119:Scamp5	UTSW	9	57,354,508 (GRCm39)	missense	possibly damaging	0.61
R2120:Scamp5	UTSW	9	57,354,508 (GRCm39)	missense	possibly damaging	0.61
R2124:Scamp5	UTSW	9	57,354,508 (GRCm39)	missense	possibly damaging	0.61
R2280:Scamp5	UTSW	9	57,352,722 (GRCm39)	missense	probably benign	0.18
R2906:Scamp5	UTSW	9	57,351,146 (GRCm39)	missense	probably damaging	1.00
R4766:Scamp5	UTSW	9	57,359,319 (GRCm39)	critical splice acceptor site	probably null
R4911:Scamp5	UTSW	9	57,358,735 (GRCm39)	missense	probably damaging	1.00
R5414:Scamp5	UTSW	9	57,354,507 (GRCm39)	missense	probably benign
R5698:Scamp5	UTSW	9	57,352,716 (GRCm39)	missense	possibly damaging	0.72
R5783:Scamp5	UTSW	9	57,353,353 (GRCm39)	critical splice donor site	probably null
R6520:Scamp5	UTSW	9	57,354,489 (GRCm39)	splice site	probably null
R7234:Scamp5	UTSW	9	57,354,423 (GRCm39)	missense	probably damaging	1.00
R7703:Scamp5	UTSW	9	57,354,465 (GRCm39)	missense	possibly damaging	0.89
R8071:Scamp5	UTSW	9	57,350,969 (GRCm39)	missense	probably damaging	1.00
R8905:Scamp5	UTSW	9	57,352,669 (GRCm39)	missense	probably benign	0.01
Z1177:Scamp5	UTSW	9	57,350,959 (GRCm39)	missense	probably benign

Predicted Primers

PCR Primer
(F):5'- TGCACCACAGGTTCCCTGGAAAAG -3'
(R):5'- TGTCTTACCTGACCAAGTCGCAGC -3'

Sequencing Primer
(F):5'- CACAGGTTCCCTGGAAAAGTATTC -3'
(R):5'- CCTATTCAGGAAGTAGGGACATTTG -3'

Posted On

2014-04-24