Mutagenetix > Incidental Mutation

Incidental Mutation 'R2032:Ccdc121rt3'

221343

Institutional Source

Beutler Lab

Gene Symbol

Ccdc121rt3

Ensembl Gene

ENSMUSG00000051503

Gene Name

coiled-coil domain containing 121, retrogene 3

Synonyms

Gm6583

MMRRC Submission

040039-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R2032 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

112501667-112503899 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 112502978 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Isoleucine at position 242 (T242I)

Ref Sequence

ENSEMBL: ENSMUSP00000049839 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035279] [ENSMUST00000051117] [ENSMUST00000112359]

AlphaFold

E9Q8Z1

Predicted Effect

probably benign
Transcript: ENSMUST00000035279

SMART Domains

Protein: ENSMUSP00000047920
Gene: ENSMUSG00000042328

Domain	Start	End	E-Value	Type
low complexity region	171	180	N/A	INTRINSIC
low complexity region	467	486	N/A	INTRINSIC
low complexity region	514	529	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000051117
AA Change: T242I

PolyPhen 2 Score 0.946 (Sensitivity: 0.80; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000049839
Gene: ENSMUSG00000051503
AA Change: T242I

Domain	Start	End	E-Value	Type
low complexity region	71	83	N/A	INTRINSIC
coiled coil region	159	193	N/A	INTRINSIC
Pfam:DUF4515	199	404	1.2e-79	PFAM
low complexity region	406	422	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000112359

SMART Domains

Protein: ENSMUSP00000107978
Gene: ENSMUSG00000042328

Domain	Start	End	E-Value	Type
low complexity region	171	180	N/A	INTRINSIC
low complexity region	467	486	N/A	INTRINSIC
low complexity region	514	529	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133708

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.2%
20x: 95.1%

Validation Efficiency

98% (54/55)

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca3	G	A	17: 24,585,056 (GRCm39)		probably benign	Het
Abca7	C	T	10: 79,844,071 (GRCm39)	T1359M	probably damaging	Het
Acox2	A	G	14: 8,246,400 (GRCm38)	S464P	probably benign	Het
Adgrf1	C	T	17: 43,622,166 (GRCm39)	T801I	probably damaging	Het
Akap11	T	A	14: 78,747,477 (GRCm39)	I1637L	possibly damaging	Het
Akap12	C	A	10: 4,306,673 (GRCm39)	A1161D	possibly damaging	Het
Ankrd36	T	A	11: 5,578,616 (GRCm39)	V635D	possibly damaging	Het
Ankrd44	C	T	1: 54,762,168 (GRCm39)		probably null	Het
Atl2	A	G	17: 80,203,373 (GRCm39)	V28A	probably benign	Het
Atxn3	A	T	12: 101,908,453 (GRCm39)	L133*	probably null	Het
Bmp2	T	C	2: 133,403,216 (GRCm39)	S256P	probably benign	Het
Ccdc138	T	A	10: 58,348,984 (GRCm39)	Y177N	possibly damaging	Het
Ccdc168	C	A	1: 44,100,900 (GRCm39)	C66F	possibly damaging	Het
Cdcp3	G	A	7: 130,844,781 (GRCm39)	G674E	probably damaging	Het
Cep164	C	T	9: 45,682,898 (GRCm39)	V931M	probably damaging	Het
Cfhr4	T	A	1: 139,660,993 (GRCm39)		probably benign	Het
CK137956	T	C	4: 127,839,069 (GRCm39)	T450A	probably benign	Het
Col23a1	G	A	11: 51,450,835 (GRCm39)	G215D	unknown	Het
Dab1	C	T	4: 104,588,948 (GRCm39)	A524V	probably benign	Het
Dennd6a	T	C	14: 26,325,904 (GRCm39)	M5T	probably benign	Het
Dnajc6	T	G	4: 101,471,435 (GRCm39)	I284S	probably benign	Het
Dolpp1	C	T	2: 30,282,453 (GRCm39)	A2V	probably damaging	Het
Eml2	C	T	7: 18,936,480 (GRCm39)	T711I	probably benign	Het
Evi5l	T	C	8: 4,260,622 (GRCm39)	D1065G	probably damaging	Het
Fam110b	G	T	4: 5,799,460 (GRCm39)	A293S	probably benign	Het
Fap	A	G	2: 62,372,581 (GRCm39)	V266A	probably benign	Het
Fgf10	A	T	13: 118,852,131 (GRCm39)	Y71F	probably damaging	Het
Gm3443	G	T	19: 21,533,164 (GRCm39)	G43C	probably damaging	Het
Gpr146	T	C	5: 139,364,902 (GRCm39)		probably benign	Het
Hif3a	A	T	7: 16,785,104 (GRCm39)	L172H	probably damaging	Het
Mas1	T	C	17: 13,061,457 (GRCm39)		probably benign	Het
Nlrp5	G	A	7: 23,120,937 (GRCm39)	R717Q	probably damaging	Het
Nop14	A	G	5: 34,817,283 (GRCm39)	V36A	possibly damaging	Het
Or10v5	C	T	19: 11,805,664 (GRCm39)	C242Y	probably damaging	Het
Or51a39	A	T	7: 102,363,083 (GRCm39)	I179N	probably benign	Het
Or7a41	T	A	10: 78,871,163 (GRCm39)	F178I	possibly damaging	Het
Parp4	T	A	14: 56,866,553 (GRCm39)	I1039K	possibly damaging	Het
Pate12	T	C	9: 36,344,195 (GRCm39)		probably null	Het
Pold2	A	T	11: 5,826,757 (GRCm39)	I59N	probably benign	Het
Prr36	T	C	8: 4,264,304 (GRCm39)		probably benign	Het
Pyroxd2	T	C	19: 42,716,088 (GRCm39)		probably benign	Het
Recql	C	T	6: 142,313,009 (GRCm39)	G403R	probably damaging	Het
Serpina3m	T	A	12: 104,355,928 (GRCm39)	D198E	probably benign	Het
Sik2	A	T	9: 50,906,947 (GRCm39)	Y93N	probably damaging	Het
Slc27a3	C	T	3: 90,294,704 (GRCm39)	R389H	probably damaging	Het
Slc29a1	A	T	17: 45,897,035 (GRCm39)	M417K	probably damaging	Het
Syt13	A	G	2: 92,783,746 (GRCm39)	K339E	probably damaging	Het
Tmem237	A	T	1: 59,148,265 (GRCm39)	H163Q	probably benign	Het
Tram2	C	T	1: 21,074,180 (GRCm39)	G253R	probably null	Het
Trpv1	A	G	11: 73,129,211 (GRCm39)	T43A	probably benign	Het
Ugt2b34	A	G	5: 87,039,131 (GRCm39)	I510T	probably damaging	Het
Vmn1r224	C	A	17: 20,639,658 (GRCm39)	D78E	probably benign	Het
Vmn1r78	A	T	7: 11,887,210 (GRCm39)	I274L	probably benign	Het
Wdfy4	C	T	14: 32,868,946 (GRCm39)	V361I	probably benign	Het
Zpbp2	A	T	11: 98,445,534 (GRCm39)	K165N	probably damaging	Het

Other mutations in Ccdc121rt3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00904:Ccdc121rt3	APN	5	112,502,994 (GRCm39)	nonsense	probably null
IGL01464:Ccdc121rt3	APN	5	112,503,399 (GRCm39)	missense	possibly damaging	0.93
IGL01615:Ccdc121rt3	APN	5	112,503,696 (GRCm39)	missense	possibly damaging	0.93
R0508:Ccdc121rt3	UTSW	5	112,502,685 (GRCm39)	missense	probably damaging	0.99
R1466:Ccdc121rt3	UTSW	5	112,502,630 (GRCm39)	missense	probably benign	0.00
R1466:Ccdc121rt3	UTSW	5	112,502,630 (GRCm39)	missense	probably benign	0.00
R1473:Ccdc121rt3	UTSW	5	112,502,415 (GRCm39)	missense	probably benign	0.45
R1474:Ccdc121rt3	UTSW	5	112,503,642 (GRCm39)	missense	probably benign
R1584:Ccdc121rt3	UTSW	5	112,502,630 (GRCm39)	missense	probably benign	0.00
R2422:Ccdc121rt3	UTSW	5	112,502,984 (GRCm39)	missense	probably damaging	1.00
R4795:Ccdc121rt3	UTSW	5	112,503,165 (GRCm39)	missense	possibly damaging	0.65
R4796:Ccdc121rt3	UTSW	5	112,503,165 (GRCm39)	missense	possibly damaging	0.65
R5306:Ccdc121rt3	UTSW	5	112,502,910 (GRCm39)	missense	probably benign	0.41
R5997:Ccdc121rt3	UTSW	5	112,502,874 (GRCm39)	missense	possibly damaging	0.71
R6915:Ccdc121rt3	UTSW	5	112,502,523 (GRCm39)	missense	probably damaging	1.00
R7022:Ccdc121rt3	UTSW	5	112,503,395 (GRCm39)	missense	probably benign
R7702:Ccdc121rt3	UTSW	5	112,503,063 (GRCm39)	missense	probably benign	0.27
R7721:Ccdc121rt3	UTSW	5	112,503,383 (GRCm39)	missense	probably benign
R8037:Ccdc121rt3	UTSW	5	112,502,882 (GRCm39)	missense	probably benign	0.23
R8114:Ccdc121rt3	UTSW	5	112,503,563 (GRCm39)	missense	probably benign
R8380:Ccdc121rt3	UTSW	5	112,503,191 (GRCm39)	missense	probably benign	0.01
R8914:Ccdc121rt3	UTSW	5	112,503,087 (GRCm39)	missense	probably damaging	0.98
R9067:Ccdc121rt3	UTSW	5	112,502,706 (GRCm39)	missense	possibly damaging	0.90
R9140:Ccdc121rt3	UTSW	5	112,502,723 (GRCm39)	missense	probably damaging	1.00
R9322:Ccdc121rt3	UTSW	5	112,503,272 (GRCm39)	missense	probably damaging	0.99
R9690:Ccdc121rt3	UTSW	5	112,503,300 (GRCm39)	missense	probably benign
R9786:Ccdc121rt3	UTSW	5	112,502,939 (GRCm39)	missense	probably benign
Z1177:Ccdc121rt3	UTSW	5	112,502,784 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AATTGCTTCTCCAAGGCGGC -3'
(R):5'- CATCAAGGACATGCAGCAGGAC -3'

Sequencing Primer
(F):5'- AACTGAAGGTGTGCCTCG -3'
(R):5'- CATGCAGCAGGACATTTTATGTGAG -3'

Posted On

2014-08-25