Incidental Mutation 'R2911:Spata21'
ID 261239
Institutional Source Beutler Lab
Gene Symbol Spata21
Ensembl Gene ENSMUSG00000045004
Gene Name spermatogenesis associated 21
Synonyms
MMRRC Submission 040498-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.083) question?
Stock # R2911 (G1)
Quality Score 225
Status Not validated
Chromosome 4
Chromosomal Location 140815644-140840071 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 140830393 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Methionine to Valine at position 288 (M288V)
Ref Sequence ENSEMBL: ENSMUSP00000053080 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000051907]
AlphaFold Q8BHW6
Predicted Effect possibly damaging
Transcript: ENSMUST00000051907
AA Change: M288V

PolyPhen 2 Score 0.464 (Sensitivity: 0.89; Specificity: 0.90)
SMART Domains Protein: ENSMUSP00000053080
Gene: ENSMUSG00000045004
AA Change: M288V

DomainStartEndE-ValueType
low complexity region 21 34 N/A INTRINSIC
low complexity region 245 251 N/A INTRINSIC
low complexity region 319 335 N/A INTRINSIC
SCOP:d1mr8a_ 428 494 7e-13 SMART
PDB:2RRT|A 432 494 2e-7 PDB
low complexity region 524 540 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000181353
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.2%
  • 20x: 94.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcf3 A G 16: 20,378,982 (GRCm39) T645A probably damaging Het
Adam10 C T 9: 70,626,005 (GRCm39) S91L probably damaging Het
Ahnak A G 19: 8,989,018 (GRCm39) D3434G probably damaging Het
Ankrd11 A T 8: 123,635,537 (GRCm39) D32E probably damaging Het
Cacna1b A T 2: 24,497,553 (GRCm39) probably null Het
Cd109 CATTTATTTATTTATTTATTTATTTATTTATTTAT CATTTATTTATTTATTTATTTATTTATTTATTTATTTAT 9: 78,619,782 (GRCm39) probably benign Het
Cep104 T A 4: 154,079,884 (GRCm39) probably null Het
Clstn2 A G 9: 97,414,775 (GRCm39) V373A probably damaging Het
Cyp2c65 T G 19: 39,076,126 (GRCm39) I359M probably damaging Het
Cyp4a12b A T 4: 115,290,723 (GRCm39) K282* probably null Het
Ddx1 C T 12: 13,281,441 (GRCm39) probably null Het
Dnah7a A T 1: 53,466,983 (GRCm39) probably null Het
Dzip1l T C 9: 99,537,655 (GRCm39) V419A probably benign Het
Epha3 A C 16: 63,472,775 (GRCm39) V370G probably benign Het
Fbxo38 T C 18: 62,652,878 (GRCm39) D523G probably benign Het
Fryl T C 5: 73,207,799 (GRCm39) D2457G probably damaging Het
Gm379 A C X: 107,708,371 (GRCm39) F43V possibly damaging Het
Grhl3 T C 4: 135,286,457 (GRCm39) I75V probably benign Het
Lcp2 G A 11: 34,018,970 (GRCm39) probably null Het
Lipo3 T A 19: 33,556,767 (GRCm39) I220F probably benign Het
Lrp1b T C 2: 41,396,704 (GRCm39) E340G probably benign Het
Lypd8l G A 11: 58,499,252 (GRCm39) Q189* probably null Het
Mbtps1 A G 8: 120,272,776 (GRCm39) I123T possibly damaging Het
Ndc80 A T 17: 71,807,371 (GRCm39) S528R probably benign Het
Odf2l A C 3: 144,830,084 (GRCm39) I19L probably benign Het
Or10d3 T C 9: 39,462,117 (GRCm39) I17V possibly damaging Het
Or5h25 C T 16: 58,930,544 (GRCm39) R143H probably benign Het
Or7e177 A G 9: 20,211,775 (GRCm39) K94R possibly damaging Het
Pigr A G 1: 130,777,270 (GRCm39) D692G probably damaging Het
Reep2 T C 18: 34,978,743 (GRCm39) probably null Het
Rin3 T G 12: 102,339,843 (GRCm39) S598A probably benign Het
Rreb1 A T 13: 38,132,896 (GRCm39) E1690D probably benign Het
Rubcnl C T 14: 75,278,248 (GRCm39) T344I probably benign Het
Shcbp1l C A 1: 153,304,372 (GRCm39) L144I probably damaging Het
Snx2 C T 18: 53,332,946 (GRCm39) P207S probably damaging Het
Sox17 A T 1: 4,563,354 (GRCm39) D92E probably damaging Het
Sra1 T C 18: 36,809,238 (GRCm39) D273G possibly damaging Het
Syt7 T C 19: 10,420,799 (GRCm39) I448T probably benign Het
Tac1 A G 6: 7,559,097 (GRCm39) probably null Het
Tgs1 C A 4: 3,585,616 (GRCm39) N164K probably benign Het
Tmem72 T A 6: 116,675,292 (GRCm39) I67F possibly damaging Het
Ythdc1 T C 5: 86,964,418 (GRCm39) S88P possibly damaging Het
Other mutations in Spata21
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00502:Spata21 APN 4 140,838,675 (GRCm39) splice site probably null
IGL02679:Spata21 APN 4 140,838,576 (GRCm39) unclassified probably benign
R1772:Spata21 UTSW 4 140,838,607 (GRCm39) missense possibly damaging 0.79
R1894:Spata21 UTSW 4 140,838,692 (GRCm39) missense possibly damaging 0.53
R1950:Spata21 UTSW 4 140,838,716 (GRCm39) missense probably damaging 0.99
R2015:Spata21 UTSW 4 140,834,640 (GRCm39) nonsense probably null
R2093:Spata21 UTSW 4 140,824,277 (GRCm39) missense probably benign 0.04
R4809:Spata21 UTSW 4 140,824,431 (GRCm39) critical splice donor site probably null
R4897:Spata21 UTSW 4 140,832,261 (GRCm39) missense probably damaging 0.99
R4907:Spata21 UTSW 4 140,824,432 (GRCm39) critical splice donor site probably null
R4921:Spata21 UTSW 4 140,839,402 (GRCm39) missense probably damaging 1.00
R5269:Spata21 UTSW 4 140,830,332 (GRCm39) missense probably damaging 1.00
R5380:Spata21 UTSW 4 140,834,496 (GRCm39) missense probably damaging 1.00
R5602:Spata21 UTSW 4 140,824,210 (GRCm39) missense probably benign
R6982:Spata21 UTSW 4 140,824,184 (GRCm39) missense possibly damaging 0.71
R7503:Spata21 UTSW 4 140,822,614 (GRCm39) missense probably benign 0.05
R7809:Spata21 UTSW 4 140,831,354 (GRCm39) missense probably null 0.83
R8072:Spata21 UTSW 4 140,839,317 (GRCm39) nonsense probably null
R8695:Spata21 UTSW 4 140,838,755 (GRCm39) critical splice donor site probably null
R8703:Spata21 UTSW 4 140,832,218 (GRCm39) missense probably benign 0.01
R8940:Spata21 UTSW 4 140,832,216 (GRCm39) missense probably damaging 1.00
R9462:Spata21 UTSW 4 140,831,316 (GRCm39) missense probably damaging 1.00
R9601:Spata21 UTSW 4 140,822,467 (GRCm39) missense possibly damaging 0.93
Z1177:Spata21 UTSW 4 140,825,313 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- TGAGGTCACGCCATCTCTTG -3'
(R):5'- TGGAAGGTTCATGCAGGGTC -3'

Sequencing Primer
(F):5'- AGGACAGTCTGAGCACCC -3'
(R):5'- GTTCATGCAGGGTCAGAGG -3'
Posted On 2015-01-23