Mutagenetix > Incidental Mutation

Incidental Mutation 'R0358:Tcte1'

29965

Institutional Source

Beutler Lab

Gene Symbol

Tcte1

Ensembl Gene

ENSMUSG00000023949

Gene Name

t-complex-associated testis expressed 1

Synonyms

D17Sil1, Tcte-1

MMRRC Submission

038564-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0358 (G1)

Quality Score

168

Status

Validated

Chromosome

Chromosomal Location

45834360-45853605 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 45846211 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 272 (T272S)

Ref Sequence

ENSEMBL: ENSMUSP00000109175 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000113547]

AlphaFold

A6H639

Predicted Effect

probably benign
Transcript: ENSMUST00000113547
AA Change: T272S

PolyPhen 2 Score 0.338 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000109175
Gene: ENSMUSG00000023949
AA Change: T272S

Domain	Start	End	E-Value	Type
low complexity region	6	17	N/A	INTRINSIC
low complexity region	28	47	N/A	INTRINSIC
low complexity region	206	222	N/A	INTRINSIC
Blast:LRR	235	274	7e-14	BLAST
LRR	304	331	5.02e-6	SMART
LRR	332	358	1.28e-3	SMART
LRR	359	386	5.81e-2	SMART
LRR	387	414	2.05e-2	SMART
LRR	415	442	1.13e-4	SMART
Blast:LRR	443	470	3e-8	BLAST

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.0%
3x: 97.9%
10x: 95.2%
20x: 88.5%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921513D11Rik	G	A	17: 79,935,585 (GRCm39)		probably benign	Het
Abca16	A	T	7: 120,143,939 (GRCm39)	K1651N	probably benign	Het
Abcb1b	T	C	5: 8,871,423 (GRCm39)	S326P	probably benign	Het
Ache	A	G	5: 137,288,635 (GRCm39)	T114A	probably benign	Het
Akap3	T	A	6: 126,843,775 (GRCm39)	V798D	probably damaging	Het
Ankle1	A	G	8: 71,860,189 (GRCm39)	T256A	probably damaging	Het
Aqp4	T	C	18: 15,531,302 (GRCm39)	N153S	probably benign	Het
Arhgap23	G	A	11: 97,354,414 (GRCm39)	V265M	probably damaging	Het
Arhgef25	A	T	10: 127,020,322 (GRCm39)	M326K	probably damaging	Het
Atp6v1c2	T	C	12: 17,334,961 (GRCm39)		probably benign	Het
Cars1	A	T	7: 143,142,219 (GRCm39)		probably benign	Het
Cep83	A	T	10: 94,555,593 (GRCm39)	M96L	probably benign	Het
Cfap46	A	G	7: 139,231,449 (GRCm39)		probably benign	Het
Cnnm3	T	A	1: 36,560,303 (GRCm39)	S608T	probably damaging	Het
Cul7	G	A	17: 46,974,670 (GRCm39)		probably null	Het
Dhrs2	G	A	14: 55,473,574 (GRCm39)	V78M	probably damaging	Het
Dhx38	A	T	8: 110,279,094 (GRCm39)	D1051E	probably benign	Het
Eftud2	A	G	11: 102,755,627 (GRCm39)		probably benign	Het
Egln3	T	C	12: 54,250,082 (GRCm39)	E89G	possibly damaging	Het
Eif2ak4	A	G	2: 118,294,410 (GRCm39)		probably null	Het
Fbxl17	G	A	17: 63,663,846 (GRCm39)	R67C	probably damaging	Het
Fsip2	A	T	2: 82,813,677 (GRCm39)	N3332I	possibly damaging	Het
Gbp2b	A	T	3: 142,312,550 (GRCm39)	E311V	probably damaging	Het
Gcnt2	G	T	13: 41,014,329 (GRCm39)	A167S	probably damaging	Het
Gm9797	A	T	10: 11,485,088 (GRCm39)		noncoding transcript	Het
Gpatch3	A	G	4: 133,305,215 (GRCm39)		probably null	Het
Gpr22	T	C	12: 31,759,981 (GRCm39)	N47S	probably benign	Het
Il18rap	A	T	1: 40,588,202 (GRCm39)	H600L	possibly damaging	Het
Larp7	A	G	3: 127,340,737 (GRCm39)		probably null	Het
Mep1a	A	G	17: 43,789,841 (GRCm39)	Y490H	possibly damaging	Het
Mrgprh	T	A	17: 13,096,237 (GRCm39)	V159D	probably damaging	Het
Mylk	G	C	16: 34,699,845 (GRCm39)	E403Q	possibly damaging	Het
Nrbp1	T	A	5: 31,402,231 (GRCm39)	I64N	probably damaging	Het
Nup214	G	A	2: 31,894,312 (GRCm39)		probably null	Het
Or10d1b	A	G	9: 39,613,297 (GRCm39)	I256T	possibly damaging	Het
Or13a21	G	T	7: 139,998,856 (GRCm39)	L277M	probably damaging	Het
Or2o1	T	A	11: 49,051,071 (GRCm39)	C77S	probably benign	Het
Or4k15b	A	T	14: 50,272,743 (GRCm39)	L39Q	probably damaging	Het
Pef1	A	G	4: 130,021,180 (GRCm39)	T245A	probably damaging	Het
Phrf1	A	G	7: 140,838,217 (GRCm39)		probably benign	Het
Ppig	A	G	2: 69,573,942 (GRCm39)		probably benign	Het
Ppp1r8	G	T	4: 132,562,039 (GRCm39)	F60L	probably damaging	Het
Psmd11	G	A	11: 80,353,510 (GRCm39)		probably benign	Het
Ptk6	G	T	2: 180,840,315 (GRCm39)	H230Q	probably benign	Het
Ptprd	T	C	4: 75,863,226 (GRCm39)	Y1496C	probably damaging	Het
Rhbdl3	G	T	11: 80,244,457 (GRCm39)	W388L	probably damaging	Het
Rnf130	T	A	11: 49,962,109 (GRCm39)	M185K	probably benign	Het
S100a13	A	T	3: 90,423,299 (GRCm39)	I97F	probably damaging	Het
Slc22a16	T	G	10: 40,463,488 (GRCm39)		probably null	Het
Terf1	T	C	1: 15,876,062 (GRCm39)	V54A	possibly damaging	Het
Tmem63a	T	A	1: 180,783,988 (GRCm39)	N189K	probably benign	Het
Trim32	G	A	4: 65,531,491 (GRCm39)	R16Q	probably damaging	Het
Trim66	G	A	7: 109,059,383 (GRCm39)	Q954*	probably null	Het
Trpv4	A	G	5: 114,768,493 (GRCm39)	F525S	probably damaging	Het
Ttll7	A	G	3: 146,649,871 (GRCm39)	T634A	probably benign	Het
Tut7	T	C	13: 59,929,918 (GRCm39)	D47G	probably damaging	Het
Ush2a	T	G	1: 188,269,977 (GRCm39)	N1741K	possibly damaging	Het
Wdr87-ps	A	T	7: 29,231,636 (GRCm39)		noncoding transcript	Het
Zfp451	T	A	1: 33,816,810 (GRCm39)	H163L	probably damaging	Het

Other mutations in Tcte1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00094:Tcte1	APN	17	45,845,854 (GRCm39)	missense	probably damaging	1.00
IGL00945:Tcte1	APN	17	45,852,115 (GRCm39)	missense	probably benign	0.15
IGL01120:Tcte1	APN	17	45,850,594 (GRCm39)	missense	probably damaging	0.99
IGL01132:Tcte1	APN	17	45,850,788 (GRCm39)	missense	possibly damaging	0.93
IGL01884:Tcte1	APN	17	45,850,735 (GRCm39)	splice site	probably null
IGL02418:Tcte1	APN	17	45,852,128 (GRCm39)	missense	probably benign	0.37
IGL02731:Tcte1	APN	17	45,850,812 (GRCm39)	missense	probably benign	0.00
IGL03130:Tcte1	APN	17	45,844,222 (GRCm39)	missense	probably damaging	1.00
R1519:Tcte1	UTSW	17	45,846,178 (GRCm39)	missense	probably damaging	1.00
R2013:Tcte1	UTSW	17	45,852,237 (GRCm39)	missense	probably benign	0.30
R2014:Tcte1	UTSW	17	45,852,237 (GRCm39)	missense	probably benign	0.30
R3744:Tcte1	UTSW	17	45,850,597 (GRCm39)	missense	probably damaging	0.99
R4250:Tcte1	UTSW	17	45,850,617 (GRCm39)	missense	probably benign	0.04
R4976:Tcte1	UTSW	17	45,845,854 (GRCm39)	missense	probably damaging	1.00
R5398:Tcte1	UTSW	17	45,850,752 (GRCm39)	nonsense	probably null
R6169:Tcte1	UTSW	17	45,845,996 (GRCm39)	missense	probably benign	0.01
R6251:Tcte1	UTSW	17	45,846,085 (GRCm39)	missense	probably benign
R6279:Tcte1	UTSW	17	45,844,215 (GRCm39)	missense	possibly damaging	0.69
R6300:Tcte1	UTSW	17	45,844,215 (GRCm39)	missense	possibly damaging	0.69
R6316:Tcte1	UTSW	17	45,845,786 (GRCm39)	missense	probably benign
R6417:Tcte1	UTSW	17	45,846,056 (GRCm39)	missense	probably damaging	0.97
R6892:Tcte1	UTSW	17	45,844,083 (GRCm39)	missense	probably benign
R7047:Tcte1	UTSW	17	45,844,294 (GRCm39)	missense	possibly damaging	0.52
R7645:Tcte1	UTSW	17	45,845,915 (GRCm39)	missense	probably benign	0.00
R8125:Tcte1	UTSW	17	45,850,618 (GRCm39)	missense	possibly damaging	0.88
R9710:Tcte1	UTSW	17	45,850,798 (GRCm39)	missense	possibly damaging	0.94
Z1176:Tcte1	UTSW	17	45,845,997 (GRCm39)	missense	probably benign
Z1177:Tcte1	UTSW	17	45,845,938 (GRCm39)	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- AACGTGATCCTGGACCTGCTGC -3'
(R):5'- ACACTCTGCCTCTGAGCTGCAC -3'

Sequencing Primer
(F):5'- AACAGTCGGACTCTGGCAG -3'
(R):5'- tgtaaggtggaggcaggag -3'

Posted On

2013-04-24