Mutagenetix > Incidental Mutation

Incidental Mutation 'R4534:Ifna6'

333232

Institutional Source

Beutler Lab

Gene Symbol

Ifna6

Ensembl Gene

ENSMUSG00000101252

Gene Name

interferon alpha 6

Synonyms

Ifa6, Ifna8

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R4534 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

88745653-88746222 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to C at 88746099 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Serine at position 149 (R149S)

Ref Sequence

ENSEMBL: ENSMUSP00000100777 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000071378] [ENSMUST00000105146]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000071378
AA Change: R149S

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000071333
Gene: ENSMUSG00000100079
AA Change: R149S

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
IFabd	58	175	1.43e-70	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105146
AA Change: R149S

PolyPhen 2 Score 0.364 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000100777
Gene: ENSMUSG00000101252
AA Change: R149S

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
IFabd	58	175	5.8e-71	SMART

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.5%
20x: 95.7%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice heterozygous for reporter allele are viable and fertile, and show normal production of interferon-alpha in response to viral infection. [provided by MGI curators]

Allele List at MGI

All alleles(1) : Targeted(1)

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Angptl3	C	T	4: 98,926,232 (GRCm39)	T454I	possibly damaging	Het
Arhgef4	T	C	1: 34,762,162 (GRCm39)	S473P	unknown	Het
Carmil3	GGACGA	GGA	14: 55,736,933 (GRCm39)		probably benign	Het
Cd200r3	T	A	16: 44,774,552 (GRCm39)	D188E	probably benign	Het
Clstn3	C	T	6: 124,436,179 (GRCm39)	R190Q	probably damaging	Het
Dennd2b	A	T	7: 109,130,363 (GRCm39)	S879R	probably damaging	Het
Depdc5	CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	CTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT	5: 33,067,751 (GRCm39)		probably benign	Het
Dnaaf5	C	T	5: 139,137,282 (GRCm39)	Q212*	probably null	Het
Efcc1	A	G	6: 87,730,133 (GRCm39)	D482G	probably null	Het
Eri2	T	C	7: 119,389,466 (GRCm39)	T151A	probably damaging	Het
Exoc4	C	T	6: 33,254,179 (GRCm39)	R112C	probably damaging	Het
Fyco1	A	G	9: 123,667,953 (GRCm39)	V91A	probably damaging	Het
Gm10320	G	A	13: 98,626,316 (GRCm39)	P23S	probably benign	Het
Hbs1l	A	G	10: 21,217,814 (GRCm39)	I240M	possibly damaging	Het
Heatr5b	T	C	17: 79,118,025 (GRCm39)	H806R	possibly damaging	Het
Herc3	T	C	6: 58,837,332 (GRCm39)	V335A	probably benign	Het
Ifi205	G	A	1: 173,845,207 (GRCm39)	P192S	probably benign	Het
Ifna9	T	C	4: 88,510,285 (GRCm39)	H113R	possibly damaging	Het
Il17rd	T	C	14: 26,818,019 (GRCm39)	F236S	probably damaging	Het
Incenp	T	C	19: 9,861,303 (GRCm39)	N450S	unknown	Het
Jmjd8	C	T	17: 26,047,984 (GRCm39)		probably null	Het
Lhx3	C	T	2: 26,094,026 (GRCm39)	V66I	probably benign	Het
Nt5c2	C	T	19: 46,880,100 (GRCm39)	C336Y	probably damaging	Het
Ntrk2	G	A	13: 59,274,343 (GRCm39)	V740I	probably damaging	Het
Ocln	A	T	13: 100,648,112 (GRCm39)	I104N	possibly damaging	Het
Or14j8	T	C	17: 38,263,613 (GRCm39)	I101V	probably benign	Het
Or8g54	G	T	9: 39,707,296 (GRCm39)	L208F	probably benign	Het
Ppp1r3c	T	C	19: 36,711,522 (GRCm39)	K83E	probably damaging	Het
Sh3glb1	T	A	3: 144,405,624 (GRCm39)	E77D	possibly damaging	Het
Slc38a3	T	C	9: 107,533,405 (GRCm39)	N251S	probably benign	Het
Spopfm2	T	C	3: 94,083,757 (GRCm39)	Y18C	probably benign	Het
Stox2	A	T	8: 47,646,414 (GRCm39)	S287T	probably damaging	Het
Sycp2	C	A	2: 177,996,802 (GRCm39)	V1134F	probably damaging	Het
Tenm2	C	T	11: 35,953,931 (GRCm39)	S1260N	possibly damaging	Het
Tfpi2	T	C	6: 3,968,044 (GRCm39)	N32S	possibly damaging	Het
Thoc5	C	T	11: 4,874,807 (GRCm39)	R533*	probably null	Het
Ttll2	A	T	17: 7,619,120 (GRCm39)	I269N	probably benign	Het
Uchl5	C	T	1: 143,661,954 (GRCm39)	T76I	probably benign	Het
Vmn2r102	A	G	17: 19,914,975 (GRCm39)	T847A	probably benign	Het
Xpa	T	C	4: 46,185,624 (GRCm39)	N118S	probably benign	Het
Xrcc3	A	G	12: 111,770,966 (GRCm39)	L321P	probably damaging	Het
Xylt2	T	C	11: 94,557,176 (GRCm39)	D105G	probably benign	Het

Other mutations in Ifna6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03403:Ifna6	APN	4	88,745,695 (GRCm39)	missense	possibly damaging	0.69
R0336:Ifna6	UTSW	4	88,746,178 (GRCm39)	missense	probably damaging	0.97
R0521:Ifna6	UTSW	4	88,745,887 (GRCm39)	missense	probably benign	0.30
R2863:Ifna6	UTSW	4	88,746,086 (GRCm39)	missense	probably benign
R2863:Ifna6	UTSW	4	88,746,099 (GRCm39)	missense	probably benign	0.36
R2865:Ifna6	UTSW	4	88,746,086 (GRCm39)	missense	probably benign
R2865:Ifna6	UTSW	4	88,746,099 (GRCm39)	missense	probably benign	0.36
R4171:Ifna6	UTSW	4	88,746,038 (GRCm39)	missense	probably benign	0.06
R4534:Ifna6	UTSW	4	88,746,086 (GRCm39)	missense	probably benign
R4992:Ifna6	UTSW	4	88,745,777 (GRCm39)	missense	probably benign	0.00
R5667:Ifna6	UTSW	4	88,745,906 (GRCm39)	missense	probably damaging	1.00
R5671:Ifna6	UTSW	4	88,745,906 (GRCm39)	missense	probably damaging	1.00
R5677:Ifna6	UTSW	4	88,745,956 (GRCm39)	missense	probably benign	0.00
R6487:Ifna6	UTSW	4	88,745,743 (GRCm39)	missense	probably damaging	1.00
R6751:Ifna6	UTSW	4	88,745,987 (GRCm39)	missense	probably damaging	1.00
R7424:Ifna6	UTSW	4	88,746,044 (GRCm39)	missense	possibly damaging	0.53
R7711:Ifna6	UTSW	4	88,745,971 (GRCm39)	missense	probably benign	0.06
R8850:Ifna6	UTSW	4	88,746,222 (GRCm39)	makesense	probably null

Predicted Primers

PCR Primer
(F):5'- AAGGACTCATCTGCTGCATGG -3'
(R):5'- AGGTTGATTGTGTTCACACTGAAG -3'

Sequencing Primer
(F):5'- TGGAATGCAACCCTCCTAGACTC -3'
(R):5'- TGTGTTCACACTGAAGGTAATGAG -3'

Posted On

2015-08-18