Mutagenetix > Incidental Mutation

Incidental Mutation 'R0212:St3gal6'

33578

Institutional Source

Beutler Lab

Gene Symbol

St3gal6

Ensembl Gene

ENSMUSG00000022747

Gene Name

ST3 beta-galactoside alpha-2,3-sialyltransferase 6

Synonyms

ST3Gal VI, 1700023B24Rik, Siat10

MMRRC Submission

038463-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.197) question?

Stock #

R0212 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

58290105-58344614 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to T at 58293818 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Glutamic Acid at position 237 (A237E)

Ref Sequence

ENSEMBL: ENSMUSP00000115756 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000046663] [ENSMUST00000114357] [ENSMUST00000114358] [ENSMUST00000137035]

AlphaFold

Q8VIB3

Predicted Effect

probably benign
Transcript: ENSMUST00000046663

SMART Domains

Protein: ENSMUSP00000039915
Gene: ENSMUSG00000035107

Domain	Start	End	E-Value	Type
low complexity region	2	34	N/A	INTRINSIC
CUB	69	184	4.26e-37	SMART
LCCL	188	273	4.74e-37	SMART
FA58C	288	446	4.08e-28	SMART
transmembrane domain	522	544	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000114357
AA Change: A237E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000109997
Gene: ENSMUSG00000022747
AA Change: A237E

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
Pfam:Glyco_transf_29	63	329	6.2e-70	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000114358
AA Change: A237E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000109998
Gene: ENSMUSG00000022747
AA Change: A237E

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
Pfam:Glyco_transf_29	71	329	7.1e-58	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000137035
AA Change: A237E

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000115756
Gene: ENSMUSG00000022747
AA Change: A237E

Domain	Start	End	E-Value	Type
transmembrane domain	5	27	N/A	INTRINSIC
Pfam:Glyco_transf_29	63	329	6.2e-70	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149197

Meta Mutation Damage Score

0.7442

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.1%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the sialyltransferase family. Members of this family are enzymes that transfer sialic acid from the activated cytidine 5'-monophospho-N-acetylneuraminic acid to terminal positions on sialylated glycolipids (gangliosides) or to the N- or O-linked sugar chains of glycoproteins. This protein has high specificity for neolactotetraosylceramide and neolactohexaosylceramide as glycolipid substrates and may contribute to the formation of selectin ligands and sialyl Lewis X, a carbohydrate important for cell-to-cell recognition and a blood group antigen. [provided by RefSeq, Apr 2016]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit modest impairment in leukocyte rolling and neutrophil recruitment. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim2	G	A	5: 36,006,254 (GRCm39)		probably null	Het
Adat1	T	A	8: 112,713,840 (GRCm39)	D113V	possibly damaging	Het
Arhgap40	T	G	2: 158,392,495 (GRCm39)	L656V	probably damaging	Het
Atg2a	T	C	19: 6,296,584 (GRCm39)	I330T	probably damaging	Het
Cad	A	G	5: 31,235,454 (GRCm39)	D2137G	probably damaging	Het
Cd8a	G	A	6: 71,350,633 (GRCm39)	E33K	probably benign	Het
Cemip	C	A	7: 83,622,398 (GRCm39)	G594C	probably damaging	Het
Chd6	T	A	2: 160,894,767 (GRCm39)	D31V	probably damaging	Het
Cmpk1	A	T	4: 114,822,216 (GRCm39)	M111K	possibly damaging	Het
Crispld2	T	G	8: 120,737,370 (GRCm39)	H40Q	probably benign	Het
Depdc5	A	G	5: 33,069,586 (GRCm39)	T441A	probably benign	Het
Dpm1	T	C	2: 168,069,414 (GRCm39)	N5S	probably benign	Het
Ercc4	A	G	16: 12,941,196 (GRCm39)		probably null	Het
Fam83f	A	T	15: 80,574,779 (GRCm39)	M229L	probably benign	Het
Fgd5	A	T	6: 91,965,189 (GRCm39)	D474V	probably damaging	Het
Fgf21	G	T	7: 45,263,526 (GRCm39)	P184Q	probably benign	Het
Fry	A	T	5: 150,419,862 (GRCm39)	D1008V	probably damaging	Het
Gjd2	T	C	2: 113,841,953 (GRCm39)	T175A	probably benign	Het
Gphn	C	T	12: 78,684,326 (GRCm39)	T577I	probably damaging	Het
Ifi207	A	T	1: 173,563,964 (GRCm39)	N18K	possibly damaging	Het
Ifne	T	C	4: 88,797,972 (GRCm39)	R149G	possibly damaging	Het
Ift80	A	T	3: 68,847,506 (GRCm39)	L330H	probably benign	Het
Inpp4b	A	T	8: 82,497,546 (GRCm39)	H122L	probably benign	Het
Inpp5e	T	C	2: 26,298,352 (GRCm39)		probably null	Het
Ism1	T	C	2: 139,582,177 (GRCm39)	L163S	probably benign	Het
Itga11	T	A	9: 62,653,251 (GRCm39)	V375E	probably benign	Het
Itpr3	T	G	17: 27,308,293 (GRCm39)	F306V	probably damaging	Het
Kif19a	A	T	11: 114,675,736 (GRCm39)	I403F	possibly damaging	Het
Klf12	A	T	14: 100,260,298 (GRCm39)	S144T	probably benign	Het
Lyst	C	T	13: 13,810,570 (GRCm39)	H747Y	possibly damaging	Het
Mccc2	A	G	13: 100,091,163 (GRCm39)	Y445H	probably benign	Het
Mei1	G	A	15: 81,980,132 (GRCm39)		probably null	Het
Metap2	T	A	10: 93,697,242 (GRCm39)	K479N	probably damaging	Het
Mief2	A	T	11: 60,621,493 (GRCm39)	D62V	probably damaging	Het
Mtrf1	A	G	14: 79,656,719 (GRCm39)	D407G	probably benign	Het
Myo3a	A	G	2: 22,296,659 (GRCm39)	R210G	probably damaging	Het
Nkx2-2	T	C	2: 147,026,090 (GRCm39)	H216R	probably damaging	Het
Nos1	A	G	5: 118,048,277 (GRCm39)	E694G	possibly damaging	Het
Nptn	A	T	9: 58,535,164 (GRCm39)	Y103F	probably benign	Het
Nrxn1	A	G	17: 90,670,186 (GRCm39)		probably benign	Het
Numbl	T	C	7: 26,980,184 (GRCm39)	S389P	probably damaging	Het
Or10d5	A	G	9: 39,861,236 (GRCm39)	V277A	probably benign	Het
Or1q1	T	A	2: 36,887,644 (GRCm39)	V274E	possibly damaging	Het
Or1q1	A	T	2: 36,887,335 (GRCm39)	D171V	probably damaging	Het
Or5b105	G	A	19: 13,080,642 (GRCm39)	R3C	possibly damaging	Het
Or5d16	A	G	2: 87,773,435 (GRCm39)	F179S	probably damaging	Het
Or5i1	C	T	2: 87,613,826 (GRCm39)	P314L	unknown	Het
Or8g20	C	A	9: 39,396,384 (GRCm39)	S55I	probably damaging	Het
Osm	T	G	11: 4,188,465 (GRCm39)	S31A	probably benign	Het
Paqr4	T	C	17: 23,957,294 (GRCm39)	M70V	probably benign	Het
Pikfyve	T	A	1: 65,302,064 (GRCm39)	Y1607N	probably benign	Het
Plec	A	C	15: 76,075,505 (GRCm39)	Y402*	probably null	Het
Polq	A	G	16: 36,887,216 (GRCm39)	K1631E	probably damaging	Het
Pou6f1	A	G	15: 100,478,696 (GRCm39)	V129A	possibly damaging	Het
Prm2	A	G	16: 10,609,463 (GRCm39)		probably benign	Het
Prtn3	A	G	10: 79,716,971 (GRCm39)	Y112C	probably damaging	Het
Qrfp	T	A	2: 31,698,797 (GRCm39)	H45L	probably benign	Het
Rps6ka5	A	T	12: 100,519,428 (GRCm39)		probably null	Het
Rspo1	G	A	4: 124,885,190 (GRCm39)	R22Q	probably benign	Het
Slc10a1	A	C	12: 81,014,486 (GRCm39)	L78R	possibly damaging	Het
Slc26a5	A	T	5: 22,028,547 (GRCm39)	Y340*	probably null	Het
Sptbn2	T	C	19: 4,796,970 (GRCm39)		probably null	Het
Tmem131l	A	T	3: 83,820,575 (GRCm39)	S1226T	probably benign	Het
Togaram2	C	T	17: 72,031,978 (GRCm39)	L866F	probably damaging	Het
Txndc17	A	G	11: 72,098,558 (GRCm39)	T37A	probably benign	Het
Vmn2r105	C	A	17: 20,428,827 (GRCm39)	V750F	possibly damaging	Het
Vmn2r54	T	A	7: 12,366,424 (GRCm39)	Y170F	probably benign	Het
Wrnip1	T	C	13: 33,005,889 (GRCm39)	V577A	probably benign	Het
Zc3h7b	A	G	15: 81,660,529 (GRCm39)	T226A	probably benign	Het
Zfp948	T	C	17: 21,808,422 (GRCm39)	I538T	probably benign	Het
Zzef1	A	G	11: 72,764,736 (GRCm39)	E1401G	possibly damaging	Het

Other mutations in St3gal6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01518:St3gal6	APN	16	58,305,138 (GRCm39)	missense	probably benign	0.31
IGL01583:St3gal6	APN	16	58,314,033 (GRCm39)	unclassified	probably benign
IGL02512:St3gal6	APN	16	58,293,822 (GRCm39)	missense	probably benign	0.00
R0212:St3gal6	UTSW	16	58,293,816 (GRCm39)	missense	probably damaging	0.96
R0441:St3gal6	UTSW	16	58,293,818 (GRCm39)	missense	probably damaging	1.00
R0441:St3gal6	UTSW	16	58,293,816 (GRCm39)	missense	probably damaging	0.96
R0442:St3gal6	UTSW	16	58,293,818 (GRCm39)	missense	probably damaging	1.00
R0442:St3gal6	UTSW	16	58,293,816 (GRCm39)	missense	probably damaging	0.96
R1786:St3gal6	UTSW	16	58,296,234 (GRCm39)	missense	probably damaging	1.00
R1939:St3gal6	UTSW	16	58,293,924 (GRCm39)	splice site	probably null
R2233:St3gal6	UTSW	16	58,293,897 (GRCm39)	missense	probably damaging	1.00
R2274:St3gal6	UTSW	16	58,309,332 (GRCm39)	missense	possibly damaging	0.46
R2336:St3gal6	UTSW	16	58,314,067 (GRCm39)	missense	probably damaging	1.00
R2434:St3gal6	UTSW	16	58,291,015 (GRCm39)	missense	probably damaging	1.00
R3789:St3gal6	UTSW	16	58,305,136 (GRCm39)	missense	probably benign	0.07
R6318:St3gal6	UTSW	16	58,306,769 (GRCm39)	missense	probably benign	0.01
R7320:St3gal6	UTSW	16	58,314,074 (GRCm39)	missense	probably benign	0.00
R7599:St3gal6	UTSW	16	58,293,800 (GRCm39)	missense	probably benign	0.00
R8907:St3gal6	UTSW	16	58,314,095 (GRCm39)	missense	probably benign	0.00
R9100:St3gal6	UTSW	16	58,306,793 (GRCm39)	missense
R9593:St3gal6	UTSW	16	58,305,136 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTGGCAACCTGTAAGACATGAGAGC -3'
(R):5'- TTCAGACTCCAGTCACTATGACCCC -3'

Sequencing Primer
(F):5'- GAGCATATCCATTTGGTGTCCAAC -3'
(R):5'- AATACTACAGCGGTTCTCGTCG -3'

Posted On

2013-05-09