Mutagenetix > Incidental Mutation

Incidental Mutation 'R5362:Clec4a1'

422867

Institutional Source

Beutler Lab

Gene Symbol

Clec4a1

Ensembl Gene

ENSMUSG00000049037

Gene Name

C-type lectin domain family 4, member a1

Synonyms

mDcir4

MMRRC Submission

043264-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.051) question?

Stock #

R5362 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

122898807-122911578 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 122909196 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 188 (D188G)

Ref Sequence

ENSEMBL: ENSMUSP00000062441 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000060484]

AlphaFold

Q80UI7

Predicted Effect

probably damaging
Transcript: ENSMUST00000060484
AA Change: D188G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000062441
Gene: ENSMUSG00000049037
AA Change: D188G

Domain	Start	End	E-Value	Type
low complexity region	23	35	N/A	INTRINSIC
transmembrane domain	54	76	N/A	INTRINSIC
CLECT	114	239	8.08e-29	SMART

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.6%
20x: 96.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 49 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
5530400C23Rik	A	T	6: 133,271,445 (GRCm39)	D163V	probably benign	Het
Afg3l2	G	T	18: 67,554,329 (GRCm39)	L458M	probably damaging	Het
Ankrd17	G	A	5: 90,413,404 (GRCm39)	A1170V	probably damaging	Het
Ano1	A	C	7: 144,202,337 (GRCm39)		probably benign	Het
Atl2	T	C	17: 80,168,890 (GRCm39)	N37D	probably damaging	Het
C2cd5	T	C	6: 143,028,969 (GRCm39)	Y90C	probably damaging	Het
Carm1	A	G	9: 21,498,655 (GRCm39)	N499S	probably benign	Het
Ccdc47	G	A	11: 106,099,039 (GRCm39)		probably null	Het
Cd300lf	G	T	11: 115,007,940 (GRCm39)	L251M	probably damaging	Het
Cfap74	A	G	4: 155,522,623 (GRCm39)	S670G	probably damaging	Het
Col4a1	T	C	8: 11,295,760 (GRCm39)		probably benign	Het
Csn2	T	A	5: 87,842,508 (GRCm39)	H165L	probably benign	Het
Cstdc1	G	T	2: 148,625,298 (GRCm39)	L77F	probably damaging	Het
Dlx3	T	C	11: 95,011,326 (GRCm39)	V60A	possibly damaging	Het
Elp1	A	C	4: 56,778,969 (GRCm39)	I616S	probably damaging	Het
Fam221a	A	G	6: 49,353,049 (GRCm39)	H21R	probably damaging	Het
Foxj3	T	A	4: 119,477,340 (GRCm39)	H349Q	unknown	Het
Gm37240	G	A	3: 84,423,000 (GRCm39)	T123I	probably damaging	Het
Gpc1	A	T	1: 92,782,615 (GRCm39)	T121S	probably benign	Het
Insyn2b	G	A	11: 34,352,788 (GRCm39)	E277K	probably damaging	Het
Itga2b	A	G	11: 102,351,961 (GRCm39)	V512A	probably damaging	Het
Itgae	A	G	11: 73,002,675 (GRCm39)	Y144C	probably damaging	Het
Izumo3	A	T	4: 92,035,037 (GRCm39)	I60K	possibly damaging	Het
Kif9	G	A	9: 110,319,012 (GRCm39)	V159M	probably damaging	Het
Lrp1b	T	C	2: 41,265,914 (GRCm39)	D229G	probably damaging	Het
Nkpd1	G	A	7: 19,257,193 (GRCm39)	G324D	probably damaging	Het
Nrp2	T	A	1: 62,808,221 (GRCm39)	Y617N	probably benign	Het
Ocm	T	C	5: 143,960,674 (GRCm39)	D91G	probably damaging	Het
Or4l15	A	G	14: 50,197,986 (GRCm39)	L181P	possibly damaging	Het
Or52ad1	A	G	7: 102,995,454 (GRCm39)	V227A	probably damaging	Het
Or52n2b	A	G	7: 104,565,834 (GRCm39)	I223T	probably damaging	Het
Or6c70	T	C	10: 129,710,422 (GRCm39)	E68G	probably damaging	Het
Pex5l	G	A	3: 33,047,065 (GRCm39)	A295V	probably damaging	Het
Plekhg4	T	A	8: 106,108,030 (GRCm39)	V1029E	possibly damaging	Het
Pou2f2	G	A	7: 24,792,320 (GRCm39)	P512S	probably benign	Het
Prpf8	G	A	11: 75,397,236 (GRCm39)	R2023Q	possibly damaging	Het
Ptprd	A	T	4: 76,047,050 (GRCm39)	S399R	probably damaging	Het
Qrich2	T	C	11: 116,337,976 (GRCm39)	Y1889C	probably damaging	Het
R3hdm4	C	T	10: 79,748,292 (GRCm39)	E162K	possibly damaging	Het
Ranbp6	G	T	19: 29,789,128 (GRCm39)	T408K	probably benign	Het
Scn7a	G	A	2: 66,530,342 (GRCm39)	R668C	probably damaging	Het
Sertad4	T	C	1: 192,529,414 (GRCm39)	N134S	probably damaging	Het
Spg11	G	T	2: 121,891,481 (GRCm39)	N1963K	probably damaging	Het
Svil	C	T	18: 5,057,345 (GRCm39)	P598S	probably damaging	Het
Top2a	T	C	11: 98,909,738 (GRCm39)	N120S	probably damaging	Het
Trappc9	C	T	15: 72,930,066 (GRCm39)	E97K	possibly damaging	Het
Vmn1r91	A	T	7: 19,835,386 (GRCm39)	T102S	probably benign	Het
Vmn2r99	G	T	17: 19,599,601 (GRCm39)	M428I	probably benign	Het
Zfp62	A	T	11: 49,107,439 (GRCm39)	H510L	probably damaging	Het

Other mutations in Clec4a1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00926:Clec4a1	APN	6	122,899,014 (GRCm39)	missense	possibly damaging	0.53
IGL00932:Clec4a1	APN	6	122,907,654 (GRCm39)	missense	probably damaging	1.00
IGL01973:Clec4a1	APN	6	122,907,680 (GRCm39)	missense	probably damaging	1.00
IGL01976:Clec4a1	APN	6	122,905,033 (GRCm39)	splice site	probably benign
IGL02009:Clec4a1	APN	6	122,909,175 (GRCm39)	missense	probably benign	0.09
IGL02629:Clec4a1	APN	6	122,909,106 (GRCm39)	critical splice acceptor site	probably null
IGL03180:Clec4a1	APN	6	122,901,777 (GRCm39)	missense	probably benign	0.08
R1973:Clec4a1	UTSW	6	122,901,793 (GRCm39)	splice site	probably null
R4582:Clec4a1	UTSW	6	122,909,150 (GRCm39)	missense	possibly damaging	0.58
R4758:Clec4a1	UTSW	6	122,910,825 (GRCm39)	missense	probably damaging	0.97
R4937:Clec4a1	UTSW	6	122,907,654 (GRCm39)	missense	probably damaging	1.00
R6247:Clec4a1	UTSW	6	122,905,001 (GRCm39)	missense	probably benign	0.10
R6748:Clec4a1	UTSW	6	122,910,856 (GRCm39)	missense	possibly damaging	0.72
R7387:Clec4a1	UTSW	6	122,899,016 (GRCm39)	missense	possibly damaging	0.91
R7481:Clec4a1	UTSW	6	122,904,998 (GRCm39)	missense	probably damaging	1.00
R7733:Clec4a1	UTSW	6	122,909,109 (GRCm39)	missense	possibly damaging	0.93
R8209:Clec4a1	UTSW	6	122,907,773 (GRCm39)	missense	probably damaging	0.99
R8243:Clec4a1	UTSW	6	122,901,778 (GRCm39)	missense	possibly damaging	0.75
R8297:Clec4a1	UTSW	6	122,898,960 (GRCm39)	missense	probably damaging	1.00
R8371:Clec4a1	UTSW	6	122,910,882 (GRCm39)	makesense	probably null
Z1177:Clec4a1	UTSW	6	122,910,851 (GRCm39)	missense	possibly damaging	0.46

Predicted Primers

PCR Primer
(F):5'- TCACACATTTCTATACCTGAAAGAAGT -3'
(R):5'- AATGGTAACGTCTCCCTCACAA -3'

Sequencing Primer
(F):5'- AGCTGTATCCTTGAAGCTGAC -3'
(R):5'- ATCTCTGAGTTTGAGGCCAGCC -3'

Posted On

2016-08-04