Mutagenetix > Incidental Mutation

Incidental Mutation 'R5878:Ccdc3'

455636

Institutional Source

Beutler Lab

Gene Symbol

Ccdc3

Ensembl Gene

ENSMUSG00000026676

Gene Name

coiled-coil domain containing 3

Synonyms

2310045O21Rik

MMRRC Submission

044084-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.080) question?

Stock #

R5878 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

5142587-5235682 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 5233827 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Proline at position 217 (L217P)

Ref Sequence

ENSEMBL: ENSMUSP00000027988 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027988]

AlphaFold

Q9D6Y1

Predicted Effect

probably benign
Transcript: ENSMUST00000027988
AA Change: L217P

PolyPhen 2 Score 0.272 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000027988
Gene: ENSMUSG00000026676
AA Change: L217P

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
coiled coil region	188	250	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000180479

Meta Mutation Damage Score

0.7359

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.7%

Validation Efficiency

99% (66/67)

MGI Phenotype

PHENOTYPE: Aging mice homozygous for a null allele are lean and show decreased epididymal and subcutaneous adipose tissue weight and adipocyte size, mild hyperglycemia, increased insulin sensitivity, reduced liver triglyceride levels and steatosis, and fewer inflammatory cells in epididymal fat tissue. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca12	A	T	1: 71,385,792 (GRCm39)	N275K	possibly damaging	Het
Abhd6	G	A	14: 8,028,286 (GRCm38)	V6I	probably benign	Het
Afap1l2	T	C	19: 56,904,107 (GRCm39)	T727A	probably benign	Het
Aggf1	T	C	13: 95,506,065 (GRCm39)	E174G	probably benign	Het
Ahnak	T	G	19: 8,985,706 (GRCm39)	L2330R	probably damaging	Het
Arb2a	T	A	13: 78,100,186 (GRCm39)	V129E	probably damaging	Het
Arfgef2	A	G	2: 166,712,137 (GRCm39)	T1205A	probably benign	Het
Cfap54	T	C	10: 92,800,423 (GRCm39)	D1595G	probably benign	Het
Cps1	G	T	1: 67,197,037 (GRCm39)		probably null	Het
Fam120b	A	G	17: 15,622,502 (GRCm39)	D160G	probably damaging	Het
Fezf1	C	A	6: 23,247,580 (GRCm39)	R165L	possibly damaging	Het
Fkbp15	A	T	4: 62,225,145 (GRCm39)	L838H	probably benign	Het
Frmd3	G	A	4: 74,071,847 (GRCm39)	G243D	probably damaging	Het
Gldc	A	T	19: 30,120,867 (GRCm39)		probably null	Het
Gm10188	T	C	1: 132,156,940 (GRCm39)		probably benign	Het
Gm5190	T	A	12: 113,360,859 (GRCm39)		noncoding transcript	Het
Gria1	T	C	11: 57,208,628 (GRCm39)		probably null	Het
Hdhd5	A	G	6: 120,491,485 (GRCm39)	L206P	probably damaging	Het
Herc2	A	G	7: 55,773,996 (GRCm39)	N1149S	probably benign	Het
Inca1	G	A	11: 70,586,808 (GRCm39)		probably benign	Het
Iqch	G	A	9: 63,455,272 (GRCm39)	S175F	probably damaging	Het
Itpr3	T	G	17: 27,329,836 (GRCm39)	D1543E	probably benign	Het
Khk	T	A	5: 31,088,219 (GRCm39)		probably null	Het
Kiz	C	T	2: 146,731,521 (GRCm39)	S337L	probably damaging	Het
Lzts3	G	A	2: 130,478,459 (GRCm39)	T213I	probably damaging	Het
Mab21l2	T	A	3: 86,454,025 (GRCm39)	D325V	probably damaging	Het
Mctp2	A	G	7: 71,863,856 (GRCm39)	S336P	probably benign	Het
Me3	T	A	7: 89,497,214 (GRCm39)	L405Q	probably benign	Het
Mgst2	A	T	3: 51,568,651 (GRCm39)		probably benign	Het
Myh2	A	G	11: 67,083,330 (GRCm39)	E1431G	probably damaging	Het
Naip6	A	G	13: 100,436,181 (GRCm39)	S781P	probably damaging	Het
Nr3c2	A	G	8: 77,634,897 (GRCm39)		probably null	Het
Or10ab5	A	T	7: 108,244,946 (GRCm39)	L279Q	probably damaging	Het
Or6s1	A	G	14: 51,308,449 (GRCm39)	Y134H	probably damaging	Het
Or6x1	C	T	9: 40,098,867 (GRCm39)	T152I	probably benign	Het
Otop1	G	T	5: 38,435,166 (GRCm39)	R132L	possibly damaging	Het
Parg	T	A	14: 31,939,619 (GRCm39)	D548E	possibly damaging	Het
Pcdhga4	G	T	18: 37,820,739 (GRCm39)	G763W	probably benign	Het
Pde10a	A	G	17: 9,168,204 (GRCm39)	N9S	possibly damaging	Het
Pi4k2a	T	C	19: 42,089,080 (GRCm39)	I147T	probably benign	Het
Polh	T	A	17: 46,505,251 (GRCm39)	T122S	probably damaging	Het
Ptpn13	T	C	5: 103,624,984 (GRCm39)	V96A	possibly damaging	Het
Ptpn6	C	A	6: 124,705,748 (GRCm39)	C132F	probably damaging	Het
Rbm19	T	A	5: 120,270,932 (GRCm39)	V585E	probably damaging	Het
Relch	T	A	1: 105,620,685 (GRCm39)	S387T	probably benign	Het
Rp1l1	C	T	14: 64,266,355 (GRCm39)	P647L	probably benign	Het
Rrp1b	A	G	17: 32,266,649 (GRCm39)	E72G	probably damaging	Het
Shcbp1	A	T	8: 4,798,742 (GRCm39)	H392Q	probably benign	Het
Skic2	C	T	17: 35,065,093 (GRCm39)	R371Q	possibly damaging	Het
Slc13a5	G	A	11: 72,144,217 (GRCm39)	T287I	possibly damaging	Het
Slc22a27	T	A	19: 7,904,122 (GRCm39)	E5V	probably benign	Het
Slc38a2	A	G	15: 96,590,465 (GRCm39)	V293A	probably damaging	Het
Slco6d1	T	A	1: 98,391,561 (GRCm39)		probably benign	Het
Sri	G	C	5: 8,109,353 (GRCm39)	D46H	probably damaging	Het
Tango6	A	G	8: 107,415,800 (GRCm39)	D207G	possibly damaging	Het
Tigd4	T	C	3: 84,501,749 (GRCm39)	M222T	probably benign	Het
Tmem229a	T	C	6: 24,955,172 (GRCm39)	D194G	probably benign	Het
Trank1	T	C	9: 111,195,753 (GRCm39)	V1259A	possibly damaging	Het
Trdv5	T	C	14: 54,386,255 (GRCm39)	D70G	probably benign	Het
Trim52	T	A	14: 106,344,375 (GRCm39)	M11K	probably damaging	Het
Wdr62	A	G	7: 29,940,772 (GRCm39)	M882T	probably benign	Het
Ybx3	A	G	6: 131,344,726 (GRCm39)		probably null	Het
Zfand2b	A	G	1: 75,147,154 (GRCm39)		probably benign	Het
Zfp91	T	A	19: 12,747,684 (GRCm39)	T480S	possibly damaging	Het

Other mutations in Ccdc3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
H8562:Ccdc3	UTSW	2	5,143,016 (GRCm39)	missense	probably damaging	1.00
R1164:Ccdc3	UTSW	2	5,146,077 (GRCm39)	missense	possibly damaging	0.95
R1808:Ccdc3	UTSW	2	5,142,896 (GRCm39)	missense	probably damaging	1.00
R3832:Ccdc3	UTSW	2	5,233,953 (GRCm39)	missense	probably benign	0.18
R5686:Ccdc3	UTSW	2	5,142,871 (GRCm39)	missense	probably damaging	1.00
R6003:Ccdc3	UTSW	2	5,146,218 (GRCm39)	critical splice donor site	probably null
R6053:Ccdc3	UTSW	2	5,233,838 (GRCm39)	missense	probably benign	0.22
R6987:Ccdc3	UTSW	2	5,143,115 (GRCm39)	missense	possibly damaging	0.76
R7470:Ccdc3	UTSW	2	5,143,115 (GRCm39)	missense	possibly damaging	0.76
R7701:Ccdc3	UTSW	2	5,142,868 (GRCm39)	missense	possibly damaging	0.55
R7714:Ccdc3	UTSW	2	5,233,908 (GRCm39)	missense	probably damaging	0.99
R7716:Ccdc3	UTSW	2	5,143,113 (GRCm39)	missense	probably benign	0.02
R8329:Ccdc3	UTSW	2	5,233,848 (GRCm39)	missense	probably damaging	1.00
R9272:Ccdc3	UTSW	2	5,146,143 (GRCm39)	missense	probably damaging	0.98
R9511:Ccdc3	UTSW	2	5,143,090 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TCCTGCAAAGACGAGCAAAG -3'
(R):5'- TGCTACCCATGCAGATAGGG -3'

Sequencing Primer
(F):5'- ATCTGAGGTCAGGCAGGATTCC -3'
(R):5'- CCATGCAGATAGGGGGCAC -3'

Posted On

2017-02-10