Mutagenetix > Incidental Mutation

Incidental Mutation 'R5878:Rrp1b'

490539

Institutional Source

Beutler Lab

Gene Symbol

Rrp1b

Ensembl Gene

ENSMUSG00000058392

Gene Name

ribosomal RNA processing 1B

Synonyms

2600005C20Rik

MMRRC Submission

044084-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R5878 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

32255087-32281839 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 32266649 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 72 (E72G)

Ref Sequence

ENSEMBL: ENSMUSP00000080085 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081339] [ENSMUST00000150469] [ENSMUST00000151808]

AlphaFold

Q91YK2

Predicted Effect

probably damaging
Transcript: ENSMUST00000081339
AA Change: E72G

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000080085
Gene: ENSMUSG00000058392
AA Change: E72G

Domain	Start	End	E-Value	Type
Pfam:Nop52	10	218	3.3e-73	PFAM
low complexity region	344	352	N/A	INTRINSIC
low complexity region	376	384	N/A	INTRINSIC
low complexity region	450	463	N/A	INTRINSIC
low complexity region	483	496	N/A	INTRINSIC
low complexity region	694	706	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136094

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147076

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149746

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150151

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150469

SMART Domains

Protein: ENSMUSP00000117400
Gene: ENSMUSG00000058392

Domain	Start	End	E-Value	Type
low complexity region	96	107	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000151808

SMART Domains

Protein: ENSMUSP00000123044
Gene: ENSMUSG00000058392

Domain	Start	End	E-Value	Type
Pfam:Nop52	8	77	1.9e-25	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156164

Meta Mutation Damage Score

0.6389

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 97.9%
20x: 93.7%

Validation Efficiency

99% (66/67)

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca12	A	T	1: 71,385,792 (GRCm39)	N275K	possibly damaging	Het
Abhd6	G	A	14: 8,028,286 (GRCm38)	V6I	probably benign	Het
Afap1l2	T	C	19: 56,904,107 (GRCm39)	T727A	probably benign	Het
Aggf1	T	C	13: 95,506,065 (GRCm39)	E174G	probably benign	Het
Ahnak	T	G	19: 8,985,706 (GRCm39)	L2330R	probably damaging	Het
Arb2a	T	A	13: 78,100,186 (GRCm39)	V129E	probably damaging	Het
Arfgef2	A	G	2: 166,712,137 (GRCm39)	T1205A	probably benign	Het
Ccdc3	T	C	2: 5,233,827 (GRCm39)	L217P	probably benign	Het
Cfap54	T	C	10: 92,800,423 (GRCm39)	D1595G	probably benign	Het
Cps1	G	T	1: 67,197,037 (GRCm39)		probably null	Het
Fam120b	A	G	17: 15,622,502 (GRCm39)	D160G	probably damaging	Het
Fezf1	C	A	6: 23,247,580 (GRCm39)	R165L	possibly damaging	Het
Fkbp15	A	T	4: 62,225,145 (GRCm39)	L838H	probably benign	Het
Frmd3	G	A	4: 74,071,847 (GRCm39)	G243D	probably damaging	Het
Gldc	A	T	19: 30,120,867 (GRCm39)		probably null	Het
Gm10188	T	C	1: 132,156,940 (GRCm39)		probably benign	Het
Gm5190	T	A	12: 113,360,859 (GRCm39)		noncoding transcript	Het
Gria1	T	C	11: 57,208,628 (GRCm39)		probably null	Het
Hdhd5	A	G	6: 120,491,485 (GRCm39)	L206P	probably damaging	Het
Herc2	A	G	7: 55,773,996 (GRCm39)	N1149S	probably benign	Het
Inca1	G	A	11: 70,586,808 (GRCm39)		probably benign	Het
Iqch	G	A	9: 63,455,272 (GRCm39)	S175F	probably damaging	Het
Itpr3	T	G	17: 27,329,836 (GRCm39)	D1543E	probably benign	Het
Khk	T	A	5: 31,088,219 (GRCm39)		probably null	Het
Kiz	C	T	2: 146,731,521 (GRCm39)	S337L	probably damaging	Het
Lzts3	G	A	2: 130,478,459 (GRCm39)	T213I	probably damaging	Het
Mab21l2	T	A	3: 86,454,025 (GRCm39)	D325V	probably damaging	Het
Mctp2	A	G	7: 71,863,856 (GRCm39)	S336P	probably benign	Het
Me3	T	A	7: 89,497,214 (GRCm39)	L405Q	probably benign	Het
Mgst2	A	T	3: 51,568,651 (GRCm39)		probably benign	Het
Myh2	A	G	11: 67,083,330 (GRCm39)	E1431G	probably damaging	Het
Naip6	A	G	13: 100,436,181 (GRCm39)	S781P	probably damaging	Het
Nr3c2	A	G	8: 77,634,897 (GRCm39)		probably null	Het
Or10ab5	A	T	7: 108,244,946 (GRCm39)	L279Q	probably damaging	Het
Or6s1	A	G	14: 51,308,449 (GRCm39)	Y134H	probably damaging	Het
Or6x1	C	T	9: 40,098,867 (GRCm39)	T152I	probably benign	Het
Otop1	G	T	5: 38,435,166 (GRCm39)	R132L	possibly damaging	Het
Parg	T	A	14: 31,939,619 (GRCm39)	D548E	possibly damaging	Het
Pcdhga4	G	T	18: 37,820,739 (GRCm39)	G763W	probably benign	Het
Pde10a	A	G	17: 9,168,204 (GRCm39)	N9S	possibly damaging	Het
Pi4k2a	T	C	19: 42,089,080 (GRCm39)	I147T	probably benign	Het
Polh	T	A	17: 46,505,251 (GRCm39)	T122S	probably damaging	Het
Ptpn13	T	C	5: 103,624,984 (GRCm39)	V96A	possibly damaging	Het
Ptpn6	C	A	6: 124,705,748 (GRCm39)	C132F	probably damaging	Het
Rbm19	T	A	5: 120,270,932 (GRCm39)	V585E	probably damaging	Het
Relch	T	A	1: 105,620,685 (GRCm39)	S387T	probably benign	Het
Rp1l1	C	T	14: 64,266,355 (GRCm39)	P647L	probably benign	Het
Shcbp1	A	T	8: 4,798,742 (GRCm39)	H392Q	probably benign	Het
Skic2	C	T	17: 35,065,093 (GRCm39)	R371Q	possibly damaging	Het
Slc13a5	G	A	11: 72,144,217 (GRCm39)	T287I	possibly damaging	Het
Slc22a27	T	A	19: 7,904,122 (GRCm39)	E5V	probably benign	Het
Slc38a2	A	G	15: 96,590,465 (GRCm39)	V293A	probably damaging	Het
Slco6d1	T	A	1: 98,391,561 (GRCm39)		probably benign	Het
Sri	G	C	5: 8,109,353 (GRCm39)	D46H	probably damaging	Het
Tango6	A	G	8: 107,415,800 (GRCm39)	D207G	possibly damaging	Het
Tigd4	T	C	3: 84,501,749 (GRCm39)	M222T	probably benign	Het
Tmem229a	T	C	6: 24,955,172 (GRCm39)	D194G	probably benign	Het
Trank1	T	C	9: 111,195,753 (GRCm39)	V1259A	possibly damaging	Het
Trdv5	T	C	14: 54,386,255 (GRCm39)	D70G	probably benign	Het
Trim52	T	A	14: 106,344,375 (GRCm39)	M11K	probably damaging	Het
Wdr62	A	G	7: 29,940,772 (GRCm39)	M882T	probably benign	Het
Ybx3	A	G	6: 131,344,726 (GRCm39)		probably null	Het
Zfand2b	A	G	1: 75,147,154 (GRCm39)		probably benign	Het
Zfp91	T	A	19: 12,747,684 (GRCm39)	T480S	possibly damaging	Het

Other mutations in Rrp1b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01114:Rrp1b	APN	17	32,271,793 (GRCm39)	missense	probably benign	0.09
IGL01383:Rrp1b	APN	17	32,277,552 (GRCm39)	missense	probably damaging	0.99
IGL02740:Rrp1b	APN	17	32,278,305 (GRCm39)	missense	probably damaging	1.00
IGL03030:Rrp1b	APN	17	32,275,875 (GRCm39)	missense	probably damaging	1.00
IGL03181:Rrp1b	APN	17	32,276,150 (GRCm39)	missense	probably benign	0.13
IGL03396:Rrp1b	APN	17	32,276,237 (GRCm39)	splice site	probably benign
IGL02980:Rrp1b	UTSW	17	32,269,013 (GRCm39)	missense	possibly damaging	0.49
R0138:Rrp1b	UTSW	17	32,279,426 (GRCm39)	missense	probably benign	0.24
R0394:Rrp1b	UTSW	17	32,277,538 (GRCm39)	missense	probably benign	0.34
R0681:Rrp1b	UTSW	17	32,279,369 (GRCm39)	missense	probably damaging	1.00
R1315:Rrp1b	UTSW	17	32,275,613 (GRCm39)	missense	probably benign	0.00
R1351:Rrp1b	UTSW	17	32,275,611 (GRCm39)	missense	possibly damaging	0.82
R1700:Rrp1b	UTSW	17	32,276,178 (GRCm39)	missense	probably benign	0.19
R1815:Rrp1b	UTSW	17	32,275,785 (GRCm39)	missense	probably benign
R1940:Rrp1b	UTSW	17	32,275,819 (GRCm39)	missense	possibly damaging	0.95
R2176:Rrp1b	UTSW	17	32,275,534 (GRCm39)	missense	probably benign	0.00
R2352:Rrp1b	UTSW	17	32,278,302 (GRCm39)	missense	possibly damaging	0.71
R2975:Rrp1b	UTSW	17	32,277,547 (GRCm39)	missense	probably damaging	1.00
R4552:Rrp1b	UTSW	17	32,274,984 (GRCm39)	splice site	probably benign
R5114:Rrp1b	UTSW	17	32,255,445 (GRCm39)	utr 5 prime	probably benign
R5242:Rrp1b	UTSW	17	32,270,677 (GRCm39)	missense	possibly damaging	0.82
R5647:Rrp1b	UTSW	17	32,274,985 (GRCm39)	splice site	probably benign
R5739:Rrp1b	UTSW	17	32,264,950 (GRCm39)	missense	probably damaging	1.00
R5853:Rrp1b	UTSW	17	32,275,658 (GRCm39)	missense	possibly damaging	0.49
R6389:Rrp1b	UTSW	17	32,275,601 (GRCm39)	missense	possibly damaging	0.55
R6734:Rrp1b	UTSW	17	32,274,278 (GRCm39)	intron	probably benign
R6742:Rrp1b	UTSW	17	32,275,908 (GRCm39)	missense	probably benign
R6759:Rrp1b	UTSW	17	32,276,063 (GRCm39)	missense	probably benign	0.01
R6855:Rrp1b	UTSW	17	32,271,719 (GRCm39)	missense	probably benign	0.00
R7014:Rrp1b	UTSW	17	32,268,401 (GRCm39)	missense	probably damaging	1.00
R7315:Rrp1b	UTSW	17	32,277,545 (GRCm39)	missense	probably benign	0.03
R7689:Rrp1b	UTSW	17	32,274,900 (GRCm39)	missense	probably benign	0.38
R7834:Rrp1b	UTSW	17	32,270,698 (GRCm39)	missense	probably benign	0.00
R7993:Rrp1b	UTSW	17	32,277,541 (GRCm39)	missense	probably damaging	0.98
R8272:Rrp1b	UTSW	17	32,276,163 (GRCm39)	missense	probably benign
R8371:Rrp1b	UTSW	17	32,268,458 (GRCm39)	missense	possibly damaging	0.66
R8885:Rrp1b	UTSW	17	32,270,688 (GRCm39)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- TTAGCCCAGTAGCTTAGAGTTAC -3'
(R):5'- CCTGAATGTGGAGACTGTGG -3'

Sequencing Primer
(F):5'- CACATTTGCTAAAACCTGGGGTGTC -3'
(R):5'- TCTCTGTTCAACACTAGCAGGAGG -3'

Posted On

2017-10-20