Mutagenetix > Incidental Mutation

Incidental Mutation 'R6908:Sfpq'

538854

Institutional Source

Beutler Lab

Gene Symbol

Sfpq

Ensembl Gene

ENSMUSG00000028820

Gene Name

splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)

Synonyms

1110004P21Rik, 5730453G22Rik, 9030402K04Rik, 2810416M14Rik, PSF, REP1, D4Ertd314e

MMRRC Submission

045000-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R6908 (G1)

Quality Score

153.468

Status

Not validated

Chromosome

Chromosomal Location

126915117-126930806 bp(+) (GRCm39)

Type of Mutation

small deletion (5 aa in frame mutation)

DNA Base Change (assembly)

GCCGCCGCAGCAGCCTCCGCCGCAGCAGCC to GCCGCCGCAGCAGCC at 126915419 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000030623 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030623]

AlphaFold

Q8VIJ6

Predicted Effect

probably benign
Transcript: ENSMUST00000030623

SMART Domains

Protein: ENSMUSP00000030623
Gene: ENSMUSG00000028820

Domain	Start	End	E-Value	Type
low complexity region	2	33	N/A	INTRINSIC
low complexity region	48	101	N/A	INTRINSIC
low complexity region	105	236	N/A	INTRINSIC
low complexity region	238	258	N/A	INTRINSIC
RRM	290	357	3.97e-18	SMART
RRM	364	440	3.83e-11	SMART
low complexity region	526	544	N/A	INTRINSIC
low complexity region	554	587	N/A	INTRINSIC
low complexity region	595	614	N/A	INTRINSIC
low complexity region	617	639	N/A	INTRINSIC
low complexity region	660	680	N/A	INTRINSIC
low complexity region	682	692	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.2%

Validation Efficiency

95% (52/55)

MGI Phenotype

PHENOTYPE: Mice homozygous for a gene trap allele die. Heterozygous mice show abnormality in entrainment of circadian rhythm. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 55 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abi3bp	T	C	16: 56,477,668 (GRCm39)	I1197T	probably benign	Het
Atp2a1	A	G	7: 126,047,707 (GRCm39)		probably null	Het
B3glct	T	C	5: 149,619,941 (GRCm39)		probably null	Het
Bbs9	T	G	9: 22,479,019 (GRCm39)	I154S	probably damaging	Het
Brip1	T	C	11: 85,968,710 (GRCm39)	Y825C	probably damaging	Het
Ccdc186	A	T	19: 56,780,371 (GRCm39)		probably null	Het
Celf6	T	C	9: 59,511,106 (GRCm39)	V349A	probably benign	Het
Chd9	A	G	8: 91,683,044 (GRCm39)	T495A	probably benign	Het
Cxxc1	G	A	18: 74,353,630 (GRCm39)	C546Y	probably damaging	Het
Cxxc5	T	C	18: 35,992,268 (GRCm39)	V223A	probably damaging	Het
Dlc1	A	G	8: 37,404,841 (GRCm39)	F316S	probably benign	Het
Dnajc12	C	A	10: 63,233,104 (GRCm39)	Q82K	probably benign	Het
Dock8	G	A	19: 25,165,746 (GRCm39)	E1877K	probably damaging	Het
Epha3	T	G	16: 63,418,612 (GRCm39)	H611P	probably damaging	Het
Fpr-rs6	C	A	17: 20,402,701 (GRCm39)	C220F	probably damaging	Het
Fryl	A	G	5: 73,179,554 (GRCm39)	L2951P	probably damaging	Het
Gbp10	T	G	5: 105,368,898 (GRCm39)	T314P	probably damaging	Het
Hbb-bs	T	C	7: 103,476,741 (GRCm39)	N77D	probably benign	Het
Ints13	A	T	6: 146,456,531 (GRCm39)	D438E	probably damaging	Het
Itgb6	C	T	2: 60,480,365 (GRCm39)	V324M	probably benign	Het
Kdm7a	G	T	6: 39,121,373 (GRCm39)	L861M	possibly damaging	Het
Kirrel3	A	G	9: 34,924,697 (GRCm39)	T302A	possibly damaging	Het
Lama2	A	T	10: 26,907,192 (GRCm39)		probably null	Het
Lrp2	A	T	2: 69,302,709 (GRCm39)	C3007S	probably damaging	Het
Lypd3	G	C	7: 24,337,858 (GRCm39)	G75R	probably damaging	Het
Mastl	T	C	2: 23,045,988 (GRCm39)		probably benign	Het
Mcf2l	T	C	8: 13,068,919 (GRCm39)	V1087A	probably benign	Het
Mcmdc2	C	A	1: 10,001,003 (GRCm39)		probably null	Het
Ms4a3	A	G	19: 11,615,659 (GRCm39)	I39T	probably damaging	Het
Mylk	T	G	16: 34,700,643 (GRCm39)	C495G	probably benign	Het
Myo10	A	G	15: 25,804,469 (GRCm39)	D1588G	probably damaging	Het
Myo15a	A	T	11: 60,396,832 (GRCm39)	T2634S	probably damaging	Het
Nlrp1b	T	C	11: 71,108,122 (GRCm39)	I460V	probably benign	Het
Nmt1	T	G	11: 102,949,080 (GRCm39)	S312A	possibly damaging	Het
Nynrin	T	G	14: 56,101,335 (GRCm39)	S335A	probably benign	Het
Or2d4	T	C	7: 106,543,839 (GRCm39)	Y123C	possibly damaging	Het
Paxip1	T	C	5: 27,996,222 (GRCm39)	Y19C	possibly damaging	Het
Pcdhb2	G	T	18: 37,429,577 (GRCm39)	A517S	probably damaging	Het
Pkd2l1	A	G	19: 44,140,885 (GRCm39)	I559T	probably damaging	Het
Plec	G	A	15: 76,070,081 (GRCm39)	Q806*	probably null	Het
Prss51	C	T	14: 64,333,601 (GRCm39)	A70V	probably benign	Het
Psd3	A	T	8: 68,416,829 (GRCm39)	I356K	probably benign	Het
Ptprn2	A	T	12: 116,852,508 (GRCm39)	I522F	probably benign	Het
Rab39	T	C	9: 53,617,369 (GRCm39)	D16G	probably damaging	Het
Ralgps1	T	C	2: 33,033,112 (GRCm39)	Q439R	probably benign	Het
Rapgef2	A	T	3: 79,011,370 (GRCm39)	D238E	probably benign	Het
Ripor2	G	A	13: 24,890,215 (GRCm39)	G697S	probably damaging	Het
Scn11a	A	T	9: 119,621,492 (GRCm39)	F642I	probably damaging	Het
Serinc4	G	A	2: 121,284,086 (GRCm39)	T310I	probably benign	Het
Slc36a3	T	C	11: 55,040,712 (GRCm39)		probably benign	Het
Smc1b	A	G	15: 84,991,211 (GRCm39)	S656P	probably damaging	Het
Sorbs1	A	G	19: 40,340,776 (GRCm39)	S455P	probably damaging	Het
Ttn	C	A	2: 76,720,202 (GRCm39)		probably benign	Het
Tyw5	T	C	1: 57,440,682 (GRCm39)	R27G	probably damaging	Het
Vmn1r209	T	C	13: 22,990,400 (GRCm39)	T97A	possibly damaging	Het

Other mutations in Sfpq

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00539:Sfpq	APN	4	126,917,481 (GRCm39)	missense	possibly damaging	0.80
IGL00578:Sfpq	APN	4	126,919,700 (GRCm39)	missense	probably damaging	1.00
IGL01301:Sfpq	APN	4	126,920,553 (GRCm39)	splice site	probably benign
IGL02385:Sfpq	APN	4	126,919,929 (GRCm39)	splice site	probably null
IGL03373:Sfpq	APN	4	126,920,578 (GRCm39)	missense	possibly damaging	0.92
R0645:Sfpq	UTSW	4	126,916,762 (GRCm39)	missense	possibly damaging	0.75
R2038:Sfpq	UTSW	4	126,915,295 (GRCm39)	missense	unknown
R3120:Sfpq	UTSW	4	126,915,926 (GRCm39)	missense	unknown
R4609:Sfpq	UTSW	4	126,915,404 (GRCm39)	missense	unknown
R4788:Sfpq	UTSW	4	126,919,791 (GRCm39)	missense	probably damaging	1.00
R5034:Sfpq	UTSW	4	126,917,462 (GRCm39)	splice site	probably benign
R5411:Sfpq	UTSW	4	126,915,516 (GRCm39)	missense	unknown
R6115:Sfpq	UTSW	4	126,915,141 (GRCm39)	start gained	probably null
R6906:Sfpq	UTSW	4	126,915,419 (GRCm39)	small deletion	probably benign
R6907:Sfpq	UTSW	4	126,915,419 (GRCm39)	small deletion	probably benign
R6929:Sfpq	UTSW	4	126,915,419 (GRCm39)	small deletion	probably benign
R6933:Sfpq	UTSW	4	126,915,419 (GRCm39)	small deletion	probably benign
R7029:Sfpq	UTSW	4	126,923,675 (GRCm39)	missense	probably benign	0.23
R7124:Sfpq	UTSW	4	126,919,725 (GRCm39)	missense	possibly damaging	0.50
R8752:Sfpq	UTSW	4	126,919,969 (GRCm39)	missense	possibly damaging	0.47
R9041:Sfpq	UTSW	4	126,915,296 (GRCm39)	missense	unknown
R9111:Sfpq	UTSW	4	126,915,401 (GRCm39)	small deletion	probably benign
R9125:Sfpq	UTSW	4	126,915,633 (GRCm39)	missense	unknown
R9288:Sfpq	UTSW	4	126,916,627 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- ATGTCTCGGGATCGGTTCCG -3'
(R):5'- GAGATCTTCTCCTCCGTGCG -3'

Sequencing Primer
(F):5'- ATCGGTTCCGGAGTCGC -3'
(R):5'- TCGAGACTCCGCTGCTC -3'

Posted On

2018-11-06