Mutagenetix > Incidental Mutation

Incidental Mutation 'R7339:Arid3c'

569689

Institutional Source

Beutler Lab

Gene Symbol

Arid3c

Ensembl Gene

ENSMUSG00000066224

Gene Name

AT-rich interaction domain 3C

Synonyms

OTTMUSG00000006683

MMRRC Submission

045429-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.283) question?

Stock #

R7339 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

41723836-41731142 bp(-) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

A to G at 41729883 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000081748 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000084698] [ENSMUST00000108041] [ENSMUST00000150809] [ENSMUST00000159930] [ENSMUST00000171251]

AlphaFold

A6PWV5

Predicted Effect

probably null
Transcript: ENSMUST00000084698

SMART Domains

Protein: ENSMUSP00000081748
Gene: ENSMUSG00000066224

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
low complexity region	18	32	N/A	INTRINSIC
low complexity region	41	71	N/A	INTRINSIC
ARID	107	198	5.47e-35	SMART
BRIGHT	111	203	3.7e-39	SMART
low complexity region	235	257	N/A	INTRINSIC
Blast:ARID	283	327	2e-12	BLAST
low complexity region	387	409	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108041

SMART Domains

Protein: ENSMUSP00000103676
Gene: ENSMUSG00000073889

Domain	Start	End	E-Value	Type
signal peptide	1	22	N/A	INTRINSIC
IG	33	108	5.75e-4	SMART
FN3	112	204	2.18e-2	SMART
FN3	218	304	4.93e-1	SMART
low complexity region	354	365	N/A	INTRINSIC
transmembrane domain	369	391	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000150809

SMART Domains

Protein: ENSMUSP00000116411
Gene: ENSMUSG00000066224

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
low complexity region	18	32	N/A	INTRINSIC
low complexity region	41	71	N/A	INTRINSIC
ARID	107	198	5.47e-35	SMART
BRIGHT	111	203	3.7e-39	SMART
low complexity region	235	257	N/A	INTRINSIC
Blast:ARID	283	327	2e-12	BLAST
low complexity region	357	379	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000159930

SMART Domains

Protein: ENSMUSP00000124563
Gene: ENSMUSG00000066224

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
low complexity region	18	32	N/A	INTRINSIC
low complexity region	41	71	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000171251

SMART Domains

Protein: ENSMUSP00000127678
Gene: ENSMUSG00000066224

Domain	Start	End	E-Value	Type
low complexity region	3	14	N/A	INTRINSIC
low complexity region	18	32	N/A	INTRINSIC
low complexity region	41	71	N/A	INTRINSIC
ARID	107	198	5.47e-35	SMART
BRIGHT	111	203	3.7e-39	SMART
low complexity region	235	257	N/A	INTRINSIC
Blast:ARID	283	327	2e-12	BLAST
low complexity region	387	409	N/A	INTRINSIC

Meta Mutation Damage Score

0.9487

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (61/61)

MGI Phenotype

FUNCTION: This gene is a member of the ARID (AT-rich interaction domain) family of proteins. The ARID domain is a helix-turn-helix motif-based DNA-binding domain. ARID family members have roles in embryonic patterning, cell lineage gene regulation, cell cycle control, transcriptional regulation and possibly in chromatin structure modification. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2900026A02Rik	T	C	5: 113,330,938 (GRCm39)	D1092G	probably benign	Het
Abcb11	C	T	2: 69,130,211 (GRCm39)	D282N	probably damaging	Het
Ahnak	A	T	19: 8,985,529 (GRCm39)	N2271I	possibly damaging	Het
Amz1	A	G	5: 140,727,306 (GRCm39)	S90G	probably benign	Het
Arhgap5	A	G	12: 52,564,481 (GRCm39)	E484G	possibly damaging	Het
Atp1a1	T	C	3: 101,497,188 (GRCm39)	I373V	probably benign	Het
Barhl1	T	C	2: 28,799,899 (GRCm39)	E242G	probably damaging	Het
Bltp2	G	A	11: 78,163,210 (GRCm39)		probably null	Het
Cactin	CCGGAGTCGGAGTCGGAGTCGGAGTCGGAGTCGGAG	CCGGAGTCGGAGTCGGAGTCGGAGTCGGAGTCGGAGTCGGAG	10: 81,157,152 (GRCm39)		probably benign	Het
Casz1	T	A	4: 149,036,202 (GRCm39)	V1488E	probably damaging	Het
Ccdc175	C	A	12: 72,182,815 (GRCm39)	Q401H	probably damaging	Het
Cfap36	T	C	11: 29,175,925 (GRCm39)	Y191C	probably benign	Het
Chmp2b	G	A	16: 65,342,232 (GRCm39)	Q119*	probably null	Het
Cps1	T	A	1: 67,236,174 (GRCm39)	I969N	possibly damaging	Het
Dennd5a	A	G	7: 109,500,366 (GRCm39)	F920L	probably damaging	Het
Dnah12	A	T	14: 26,594,277 (GRCm39)	T3410S	probably benign	Het
Fbxo42	T	G	4: 140,927,455 (GRCm39)	S578R	possibly damaging	Het
Fcgr1	C	T	3: 96,191,615 (GRCm39)	G398R	not run	Het
Foxa3	A	T	7: 18,748,794 (GRCm39)	Y111N	probably damaging	Het
Gabbr2	T	C	4: 46,846,340 (GRCm39)	K190E	probably benign	Het
Gbp10	T	C	5: 105,367,964 (GRCm39)	Y403C	possibly damaging	Het
Hsd3b5	A	G	3: 98,529,390 (GRCm39)	I80T	probably damaging	Het
Kri1	T	G	9: 21,197,883 (GRCm39)	Q89P		Het
Lrp6	G	T	6: 134,427,781 (GRCm39)	P1604T	probably damaging	Het
Metap1	T	C	3: 138,171,898 (GRCm39)		probably null	Het
Mkrn3	C	T	7: 62,069,530 (GRCm39)	R87H	probably benign	Het
Ms4a6d	G	A	19: 11,567,437 (GRCm39)	Q155*	probably null	Het
Myh6	T	C	14: 55,199,025 (GRCm39)		probably null	Het
Naip6	G	T	13: 100,452,527 (GRCm39)	P178Q	probably damaging	Het
Ncapg2	A	G	12: 116,378,454 (GRCm39)	E160G	probably damaging	Het
Nek6	G	A	2: 38,450,977 (GRCm39)	A127T	probably damaging	Het
Nell1	T	C	7: 49,929,297 (GRCm39)	V264A	probably benign	Het
Nlrp2	T	A	7: 5,330,627 (GRCm39)	I590F	possibly damaging	Het
Or13j1	C	T	4: 43,706,080 (GRCm39)	A163T	probably benign	Het
Or2y17	G	A	11: 49,231,875 (GRCm39)	R172Q	not run	Het
Or4f57	A	T	2: 111,790,956 (GRCm39)	M154K	probably benign	Het
Or4f6	A	G	2: 111,838,820 (GRCm39)	L237P	probably damaging	Het
Or52n4b	A	C	7: 108,144,107 (GRCm39)	D125A	probably damaging	Het
Otop3	T	A	11: 115,237,204 (GRCm39)	L556Q	probably damaging	Het
Padi1	T	C	4: 140,556,545 (GRCm39)	D190G	probably null	Het
Pald1	T	C	10: 61,159,110 (GRCm39)	S774G	possibly damaging	Het
Pde10a	C	T	17: 8,975,860 (GRCm39)	T55I	probably benign	Het
Pla2g4d	T	C	2: 120,109,459 (GRCm39)	M197V	probably benign	Het
Prom1	C	A	5: 44,258,995 (GRCm39)		probably benign	Het
Ptdss1	A	G	13: 67,111,426 (GRCm39)	H164R	possibly damaging	Het
Rrh	A	T	3: 129,604,262 (GRCm39)	I313N	probably damaging	Het
Slc35b4	A	G	6: 34,144,591 (GRCm39)	I88T	probably damaging	Het
Slc38a11	C	T	2: 65,156,914 (GRCm39)	V353I	probably benign	Het
Spata31e3	A	T	13: 50,401,204 (GRCm39)	I374N	possibly damaging	Het
Spdef	T	A	17: 27,939,219 (GRCm39)	E42D	probably benign	Het
Tgoln1	G	C	6: 72,593,261 (GRCm39)	T73R	probably benign	Het
Tmx1	A	G	12: 70,505,624 (GRCm39)	D129G	probably benign	Het
Trav13n-4	A	T	14: 53,601,435 (GRCm39)	Y68F	probably benign	Het
Trp53	T	C	11: 69,480,015 (GRCm39)	S238P	probably damaging	Het
Trp53bp1	T	C	2: 121,066,950 (GRCm39)	D592G	probably benign	Het
Ttll5	T	C	12: 85,904,238 (GRCm39)		probably null	Het
Urb1	CACTTAC	CAC	16: 90,569,461 (GRCm39)		probably benign	Het
Vmn2r43	A	T	7: 8,258,306 (GRCm39)	Y302*	probably null	Het
Vps13d	C	T	4: 144,847,938 (GRCm39)	V2478I		Het
Vps35l	A	T	7: 118,409,194 (GRCm39)	I612F	probably damaging	Het
Wsb1	A	G	11: 79,131,184 (GRCm39)	V404A	probably damaging	Het
Zfc3h1	A	G	10: 115,239,205 (GRCm39)	D539G	probably damaging	Het
Zfp318	T	C	17: 46,722,173 (GRCm39)	V1392A	probably damaging	Het

Other mutations in Arid3c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02297:Arid3c	APN	4	41,730,021 (GRCm39)	missense	possibly damaging	0.72
R0445:Arid3c	UTSW	4	41,725,172 (GRCm39)	missense	probably benign	0.00
R0675:Arid3c	UTSW	4	41,725,958 (GRCm39)	missense	probably damaging	1.00
R1617:Arid3c	UTSW	4	41,725,103 (GRCm39)	missense	probably damaging	1.00
R1711:Arid3c	UTSW	4	41,725,947 (GRCm39)	missense	probably damaging	0.99
R1929:Arid3c	UTSW	4	41,724,744 (GRCm39)	missense	probably damaging	1.00
R2270:Arid3c	UTSW	4	41,724,744 (GRCm39)	missense	probably damaging	1.00
R2271:Arid3c	UTSW	4	41,724,744 (GRCm39)	missense	probably damaging	1.00
R2272:Arid3c	UTSW	4	41,724,744 (GRCm39)	missense	probably damaging	1.00
R2867:Arid3c	UTSW	4	41,725,958 (GRCm39)	missense	probably damaging	1.00
R2867:Arid3c	UTSW	4	41,725,958 (GRCm39)	missense	probably damaging	1.00
R4818:Arid3c	UTSW	4	41,730,072 (GRCm39)	missense	possibly damaging	0.72
R5622:Arid3c	UTSW	4	41,729,959 (GRCm39)	missense	probably benign	0.02
R6289:Arid3c	UTSW	4	41,724,285 (GRCm39)	unclassified	probably benign
R6995:Arid3c	UTSW	4	41,725,087 (GRCm39)	missense	probably damaging	1.00
R8244:Arid3c	UTSW	4	41,729,997 (GRCm39)	missense	possibly damaging	0.61
R9009:Arid3c	UTSW	4	41,729,925 (GRCm39)	missense	probably benign	0.00
R9324:Arid3c	UTSW	4	41,730,138 (GRCm39)	missense	possibly damaging	0.86
R9573:Arid3c	UTSW	4	41,726,003 (GRCm39)	missense	probably benign	0.42
R9772:Arid3c	UTSW	4	41,724,723 (GRCm39)	missense	probably damaging	1.00
Z1177:Arid3c	UTSW	4	41,730,177 (GRCm39)	missense	possibly damaging	0.91

Predicted Primers

PCR Primer
(F):5'- ACATATCTGGGTGTCTCTGCTG -3'
(R):5'- TGGAAGCTGTAATGGAGGCC -3'

Sequencing Primer
(F):5'- GATTGATCATTATCCATCTTGCAGTC -3'
(R):5'- TGTAATGGAGGCCCTGCAG -3'

Posted On

2019-09-13