Incidental Mutation 'IGL01386:Intu'
| ID |
79047 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Intu
|
| Ensembl Gene |
ENSMUSG00000060798 |
| Gene Name |
inturned planar cell polarity protein |
| Synonyms |
Pdzk6, 9230116I04Rik, Pdzd6, 9430087H23Rik |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL01386
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
3 |
| Chromosomal Location |
40585559-40659206 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 40647017 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Valine
at position 630
(D630V)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000088725
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000091186]
|
| AlphaFold |
Q059U7 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000091186
AA Change: D630V
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
| SMART Domains |
Protein: ENSMUSP00000088725
Gene: ENSMUSG00000060798
AA Change: D630V
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
48 |
N/A |
INTRINSIC |
|
low complexity region
|
64 |
81 |
N/A |
INTRINSIC |
|
PDZ
|
187 |
269 |
2.09e-3 |
SMART |
|
low complexity region
|
459 |
468 |
N/A |
INTRINSIC |
|
low complexity region
|
774 |
784 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000204176
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
PHENOTYPE: Homozygous null mice show defective ciliogenesis and neural tube closure, abnormal patterning of the CNS and limbs, polydactyly, edema and death by E16.5. Homozygotes for a hypomorphic allele show defective ciliation and endochondral ossification, stunted growth, polydactyly and postnatal lethality. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actn1 |
T |
C |
12: 80,240,446 (GRCm39) |
R214G |
probably benign |
Het |
| Cacna1e |
T |
A |
1: 154,348,123 (GRCm39) |
K817N |
probably benign |
Het |
| Cyp3a16 |
A |
G |
5: 145,377,244 (GRCm39) |
F448L |
probably damaging |
Het |
| Dpp6 |
T |
A |
5: 27,869,760 (GRCm39) |
|
probably null |
Het |
| Eif2ak3 |
C |
T |
6: 70,869,710 (GRCm39) |
T799M |
probably damaging |
Het |
| Erbb4 |
A |
T |
1: 68,383,090 (GRCm39) |
S302R |
probably damaging |
Het |
| Fam217a |
T |
A |
13: 35,099,632 (GRCm39) |
|
probably benign |
Het |
| Flt4 |
C |
A |
11: 49,528,162 (GRCm39) |
A995D |
probably benign |
Het |
| Fpr-rs7 |
G |
A |
17: 20,334,454 (GRCm39) |
S12L |
probably damaging |
Het |
| Fsd1 |
C |
T |
17: 56,303,733 (GRCm39) |
S491F |
probably damaging |
Het |
| Hpcal4 |
T |
C |
4: 123,083,035 (GRCm39) |
|
probably null |
Het |
| Jak3 |
A |
G |
8: 72,136,933 (GRCm39) |
D703G |
probably damaging |
Het |
| Lama4 |
A |
G |
10: 38,887,060 (GRCm39) |
I122V |
probably benign |
Het |
| Mrpl11 |
A |
C |
19: 5,013,409 (GRCm39) |
K92T |
probably null |
Het |
| Mtarc2 |
A |
G |
1: 184,551,413 (GRCm39) |
|
probably benign |
Het |
| Mylk |
A |
G |
16: 34,791,610 (GRCm39) |
|
probably null |
Het |
| Or52ab4 |
A |
T |
7: 102,987,974 (GRCm39) |
K238* |
probably null |
Het |
| Parpbp |
A |
C |
10: 87,975,848 (GRCm39) |
Y88* |
probably null |
Het |
| Plod2 |
G |
A |
9: 92,488,655 (GRCm39) |
R627Q |
probably damaging |
Het |
| Rapsn |
G |
T |
2: 90,867,144 (GRCm39) |
A149S |
probably damaging |
Het |
| Ripk3 |
T |
G |
14: 56,023,484 (GRCm39) |
Q109P |
probably damaging |
Het |
| Scaf11 |
T |
C |
15: 96,318,361 (GRCm39) |
D401G |
probably damaging |
Het |
| Serpine2 |
G |
A |
1: 79,779,268 (GRCm39) |
T150I |
probably damaging |
Het |
| Sh2d6 |
T |
A |
6: 72,495,945 (GRCm39) |
T98S |
probably benign |
Het |
| Slc28a1 |
G |
T |
7: 80,814,427 (GRCm39) |
A513S |
probably benign |
Het |
| Tanc2 |
T |
C |
11: 105,777,207 (GRCm39) |
F795S |
probably damaging |
Het |
| Tcim |
T |
A |
8: 24,928,705 (GRCm39) |
I70F |
probably benign |
Het |
| Thbd |
G |
A |
2: 148,249,602 (GRCm39) |
Q89* |
probably null |
Het |
| Tmem115 |
C |
T |
9: 107,411,859 (GRCm39) |
T61I |
probably damaging |
Het |
| Tsc2 |
A |
T |
17: 24,832,259 (GRCm39) |
V650E |
probably damaging |
Het |
| Tubgcp6 |
A |
T |
15: 88,992,199 (GRCm39) |
Y595* |
probably null |
Het |
| Uroc1 |
C |
T |
6: 90,323,747 (GRCm39) |
A398V |
probably damaging |
Het |
| Vmn1r31 |
T |
C |
6: 58,449,587 (GRCm39) |
T93A |
probably benign |
Het |
| Vmn2r113 |
A |
G |
17: 23,175,024 (GRCm39) |
E545G |
possibly damaging |
Het |
| Vps13a |
A |
G |
19: 16,678,516 (GRCm39) |
V1155A |
possibly damaging |
Het |
| Zfp667 |
A |
G |
7: 6,307,869 (GRCm39) |
H179R |
probably benign |
Het |
|
| Other mutations in Intu |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01292:Intu
|
APN |
3 |
40,618,696 (GRCm39) |
missense |
probably benign |
0.12 |
|
IGL02645:Intu
|
APN |
3 |
40,655,702 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02869:Intu
|
APN |
3 |
40,642,216 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03263:Intu
|
APN |
3 |
40,627,027 (GRCm39) |
nonsense |
probably null |
|
|
H8562:Intu
|
UTSW |
3 |
40,647,103 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT4495001:Intu
|
UTSW |
3 |
40,652,033 (GRCm39) |
missense |
probably benign |
0.07 |
|
R0010:Intu
|
UTSW |
3 |
40,608,702 (GRCm39) |
intron |
probably benign |
|
|
R0173:Intu
|
UTSW |
3 |
40,629,776 (GRCm39) |
critical splice donor site |
probably null |
|
|
R0426:Intu
|
UTSW |
3 |
40,629,735 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R1566:Intu
|
UTSW |
3 |
40,647,008 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1619:Intu
|
UTSW |
3 |
40,652,061 (GRCm39) |
nonsense |
probably null |
|
|
R1658:Intu
|
UTSW |
3 |
40,647,211 (GRCm39) |
missense |
probably benign |
0.20 |
|
R1701:Intu
|
UTSW |
3 |
40,618,694 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1707:Intu
|
UTSW |
3 |
40,637,931 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R1707:Intu
|
UTSW |
3 |
40,595,073 (GRCm39) |
missense |
probably benign |
0.03 |
|
R1867:Intu
|
UTSW |
3 |
40,618,765 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1868:Intu
|
UTSW |
3 |
40,618,765 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2090:Intu
|
UTSW |
3 |
40,637,966 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2310:Intu
|
UTSW |
3 |
40,608,243 (GRCm39) |
missense |
probably benign |
|
|
R2989:Intu
|
UTSW |
3 |
40,647,140 (GRCm39) |
missense |
probably benign |
0.11 |
|
R4168:Intu
|
UTSW |
3 |
40,627,053 (GRCm39) |
missense |
probably benign |
0.00 |
|
R4530:Intu
|
UTSW |
3 |
40,637,794 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5093:Intu
|
UTSW |
3 |
40,647,347 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5541:Intu
|
UTSW |
3 |
40,647,017 (GRCm39) |
splice site |
probably null |
|
|
R5587:Intu
|
UTSW |
3 |
40,629,738 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5745:Intu
|
UTSW |
3 |
40,647,402 (GRCm39) |
splice site |
probably null |
|
|
R5809:Intu
|
UTSW |
3 |
40,634,020 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5939:Intu
|
UTSW |
3 |
40,647,014 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5953:Intu
|
UTSW |
3 |
40,633,980 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6000:Intu
|
UTSW |
3 |
40,608,578 (GRCm39) |
nonsense |
probably null |
|
|
R6063:Intu
|
UTSW |
3 |
40,608,524 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6245:Intu
|
UTSW |
3 |
40,629,756 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6310:Intu
|
UTSW |
3 |
40,655,721 (GRCm39) |
nonsense |
probably null |
|
|
R6353:Intu
|
UTSW |
3 |
40,608,138 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6451:Intu
|
UTSW |
3 |
40,655,723 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R6660:Intu
|
UTSW |
3 |
40,586,100 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6848:Intu
|
UTSW |
3 |
40,648,685 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7440:Intu
|
UTSW |
3 |
40,651,981 (GRCm39) |
missense |
probably benign |
0.04 |
|
R7625:Intu
|
UTSW |
3 |
40,652,029 (GRCm39) |
missense |
probably benign |
|
|
R7633:Intu
|
UTSW |
3 |
40,608,683 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7798:Intu
|
UTSW |
3 |
40,646,359 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7877:Intu
|
UTSW |
3 |
40,654,222 (GRCm39) |
missense |
probably benign |
0.07 |
|
R7978:Intu
|
UTSW |
3 |
40,652,069 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8319:Intu
|
UTSW |
3 |
40,608,202 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8332:Intu
|
UTSW |
3 |
40,629,719 (GRCm39) |
missense |
probably benign |
0.35 |
|
R8860:Intu
|
UTSW |
3 |
40,627,162 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8926:Intu
|
UTSW |
3 |
40,608,139 (GRCm39) |
missense |
possibly damaging |
0.69 |
|
R8946:Intu
|
UTSW |
3 |
40,637,789 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R9164:Intu
|
UTSW |
3 |
40,645,133 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9191:Intu
|
UTSW |
3 |
40,646,941 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9547:Intu
|
UTSW |
3 |
40,608,536 (GRCm39) |
missense |
probably benign |
|
|
Z1177:Intu
|
UTSW |
3 |
40,651,946 (GRCm39) |
missense |
possibly damaging |
0.80 |
|
| Posted On |
2013-11-05 |
Incidental Mutation