Incidental Mutation 'IGL01836:Tmem106c'
| ID |
154966 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Tmem106c
|
| Ensembl Gene |
ENSMUSG00000052369 |
| Gene Name |
transmembrane protein 106C |
| Synonyms |
D15Ertd405e |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.106)
|
| Stock # |
IGL01836
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
15 |
| Chromosomal Location |
97862081-97868156 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
C to A
at 97867567 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Arginine
at position 250
(S250R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000154819
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000064200]
[ENSMUST00000229428]
[ENSMUST00000229433]
[ENSMUST00000230072]
[ENSMUST00000231144]
|
| AlphaFold |
Q80VP8 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000064200
AA Change: S250R
PolyPhen 2
Score 0.228 (Sensitivity: 0.91; Specificity: 0.88)
|
| SMART Domains |
Protein: ENSMUSP00000069764
Gene: ENSMUSG00000052369
AA Change: S250R
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF1356
|
15 |
246 |
2.3e-105 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000229428
AA Change: S250R
PolyPhen 2
Score 0.228 (Sensitivity: 0.91; Specificity: 0.88)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000229433
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000230005
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000230072
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000230144
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000230361
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000231079
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231144
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 27 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adh6a |
A |
G |
3: 138,019,097 (GRCm39) |
|
probably benign |
Het |
| Atp1a1 |
C |
T |
3: 101,498,730 (GRCm39) |
G188R |
probably damaging |
Het |
| Cadps |
A |
G |
14: 12,522,311 (GRCm38) |
Y618H |
probably damaging |
Het |
| Dot1l |
T |
C |
10: 80,621,700 (GRCm39) |
S451P |
probably benign |
Het |
| Dpysl4 |
G |
A |
7: 138,676,089 (GRCm39) |
V294I |
possibly damaging |
Het |
| Ehmt1 |
T |
A |
2: 24,753,232 (GRCm39) |
|
probably null |
Het |
| Eps8 |
C |
T |
6: 137,460,539 (GRCm39) |
|
probably null |
Het |
| Gm7247 |
T |
A |
14: 51,602,853 (GRCm39) |
I63K |
probably damaging |
Het |
| Gsdme |
T |
A |
6: 50,199,769 (GRCm39) |
D270V |
probably damaging |
Het |
| Kel |
T |
A |
6: 41,674,372 (GRCm39) |
T353S |
possibly damaging |
Het |
| Krt73 |
T |
C |
15: 101,704,331 (GRCm39) |
H403R |
probably benign |
Het |
| Mrnip |
A |
G |
11: 50,090,675 (GRCm39) |
T280A |
probably benign |
Het |
| Or1j14 |
C |
T |
2: 36,417,837 (GRCm39) |
Q138* |
probably null |
Het |
| Pkdrej |
A |
G |
15: 85,705,159 (GRCm39) |
L259P |
probably damaging |
Het |
| Plod2 |
T |
C |
9: 92,488,551 (GRCm39) |
|
probably benign |
Het |
| Rad54l2 |
A |
G |
9: 106,593,356 (GRCm39) |
S415P |
probably benign |
Het |
| Rag1 |
A |
T |
2: 101,472,239 (GRCm39) |
F968I |
probably damaging |
Het |
| Rreb1 |
T |
C |
13: 38,115,433 (GRCm39) |
S931P |
probably damaging |
Het |
| Sec23a |
T |
C |
12: 59,018,073 (GRCm39) |
I618V |
probably damaging |
Het |
| Smtnl1 |
A |
T |
2: 84,645,714 (GRCm39) |
F386I |
probably damaging |
Het |
| Sppl2b |
C |
T |
10: 80,697,220 (GRCm39) |
T30I |
probably benign |
Het |
| Srf |
T |
C |
17: 46,860,108 (GRCm39) |
|
probably benign |
Het |
| Tbc1d22b |
A |
G |
17: 29,818,932 (GRCm39) |
T429A |
probably damaging |
Het |
| Tcf20 |
A |
T |
15: 82,739,356 (GRCm39) |
D698E |
probably damaging |
Het |
| Tmprss3 |
A |
G |
17: 31,410,018 (GRCm39) |
S199P |
probably benign |
Het |
| Ush2a |
C |
T |
1: 188,492,060 (GRCm39) |
|
probably benign |
Het |
| Zfp595 |
A |
G |
13: 67,480,525 (GRCm39) |
|
probably benign |
Het |
|
| Other mutations in Tmem106c |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01102:Tmem106c
|
APN |
15 |
97,864,825 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0165:Tmem106c
|
UTSW |
15 |
97,866,020 (GRCm39) |
unclassified |
probably benign |
|
|
R1808:Tmem106c
|
UTSW |
15 |
97,866,548 (GRCm39) |
splice site |
probably null |
|
|
R4930:Tmem106c
|
UTSW |
15 |
97,862,909 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
R7336:Tmem106c
|
UTSW |
15 |
97,867,512 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R7976:Tmem106c
|
UTSW |
15 |
97,865,985 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8957:Tmem106c
|
UTSW |
15 |
97,867,481 (GRCm39) |
missense |
probably benign |
0.01 |
|
Z1176:Tmem106c
|
UTSW |
15 |
97,865,072 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
Z1177:Tmem106c
|
UTSW |
15 |
97,862,818 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
| Posted On |
2014-02-04 |
Incidental Mutation