Incidental Mutation 'IGL01908:Vmn1r40'
ID |
179718 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Vmn1r40
|
Ensembl Gene |
ENSMUSG00000096051 |
Gene Name |
vomeronasal 1 receptor 40 |
Synonyms |
V1rb7 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.059)
|
Stock # |
IGL01908
|
Quality Score |
|
Status
|
|
Chromosome |
6 |
Chromosomal Location |
89688243-89692117 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to T
at 89691285 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Alanine to Valine
at position 34
(A34V)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154581
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000075158]
[ENSMUST00000226925]
[ENSMUST00000227669]
[ENSMUST00000228485]
[ENSMUST00000228642]
|
AlphaFold |
Q9EQ46 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000075158
AA Change: A34V
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
SMART Domains |
Protein: ENSMUSP00000074655 Gene: ENSMUSG00000096051 AA Change: A34V
Domain | Start | End | E-Value | Type |
transmembrane domain
|
15 |
37 |
N/A |
INTRINSIC |
Pfam:V1R
|
38 |
302 |
3.4e-143 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000226925
AA Change: A34V
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000227669
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000228485
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000228642
AA Change: A34V
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 29 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Aoc1 |
G |
T |
6: 48,883,690 (GRCm39) |
R522L |
probably damaging |
Het |
Asic5 |
G |
T |
3: 81,913,877 (GRCm39) |
G184* |
probably null |
Het |
Bcr |
T |
A |
10: 74,897,705 (GRCm39) |
I283N |
possibly damaging |
Het |
Bscl2 |
A |
G |
19: 8,822,640 (GRCm39) |
T134A |
probably damaging |
Het |
Clip1 |
A |
G |
5: 123,761,270 (GRCm39) |
|
probably benign |
Het |
Clnk |
T |
A |
5: 38,870,485 (GRCm39) |
N358Y |
probably damaging |
Het |
Crnkl1 |
A |
T |
2: 145,770,075 (GRCm39) |
V256E |
probably benign |
Het |
Ctsm |
A |
T |
13: 61,685,601 (GRCm39) |
S270R |
probably benign |
Het |
Dhx57 |
G |
T |
17: 80,558,872 (GRCm39) |
P1029H |
probably damaging |
Het |
Dock3 |
A |
G |
9: 106,783,861 (GRCm39) |
M277T |
possibly damaging |
Het |
Fbxo11 |
T |
C |
17: 88,299,728 (GRCm39) |
K874R |
probably benign |
Het |
Fyco1 |
A |
T |
9: 123,658,295 (GRCm39) |
L627Q |
probably damaging |
Het |
Ghr |
A |
T |
15: 3,349,929 (GRCm39) |
C416* |
probably null |
Het |
Gm10717 |
C |
T |
9: 3,025,616 (GRCm39) |
S67L |
probably benign |
Het |
Gm10718 |
A |
T |
9: 3,025,118 (GRCm39) |
Y194F |
probably benign |
Het |
Gm21738 |
G |
A |
14: 19,416,979 (GRCm38) |
S144L |
probably benign |
Het |
Kif13b |
T |
C |
14: 64,995,007 (GRCm39) |
C920R |
probably damaging |
Het |
Lrp1b |
T |
C |
2: 40,592,816 (GRCm39) |
T3768A |
probably benign |
Het |
Luzp2 |
T |
G |
7: 54,821,944 (GRCm39) |
S154A |
probably damaging |
Het |
Or52p1 |
A |
T |
7: 104,266,906 (GRCm39) |
T7S |
probably damaging |
Het |
Pisd |
C |
A |
5: 32,896,476 (GRCm39) |
|
probably null |
Het |
Rad51ap2 |
T |
A |
12: 11,508,592 (GRCm39) |
V838D |
probably damaging |
Het |
Sbf1 |
A |
T |
15: 89,186,929 (GRCm39) |
D816E |
probably damaging |
Het |
Sp140l2 |
A |
G |
1: 85,231,907 (GRCm39) |
|
probably benign |
Het |
Stim1 |
T |
C |
7: 102,084,857 (GRCm39) |
V603A |
probably benign |
Het |
Tinagl1 |
G |
T |
4: 130,061,223 (GRCm39) |
T309K |
probably damaging |
Het |
Trappc11 |
G |
A |
8: 47,957,029 (GRCm39) |
A799V |
probably damaging |
Het |
Vmn1r113 |
T |
C |
7: 20,521,943 (GRCm39) |
L245P |
probably damaging |
Het |
Vmn2r129 |
C |
T |
4: 156,690,549 (GRCm39) |
|
noncoding transcript |
Het |
|
Other mutations in Vmn1r40 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01099:Vmn1r40
|
APN |
6 |
89,691,578 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL01432:Vmn1r40
|
APN |
6 |
89,691,201 (GRCm39) |
missense |
probably benign |
|
IGL01777:Vmn1r40
|
APN |
6 |
89,691,204 (GRCm39) |
missense |
probably benign |
0.38 |
IGL01834:Vmn1r40
|
APN |
6 |
89,691,554 (GRCm39) |
missense |
possibly damaging |
0.62 |
IGL01908:Vmn1r40
|
APN |
6 |
89,691,291 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL01999:Vmn1r40
|
APN |
6 |
89,691,948 (GRCm39) |
missense |
probably benign |
0.00 |
IGL02728:Vmn1r40
|
APN |
6 |
89,691,998 (GRCm39) |
missense |
probably benign |
0.05 |
IGL03169:Vmn1r40
|
APN |
6 |
89,692,005 (GRCm39) |
missense |
probably damaging |
0.97 |
R0448:Vmn1r40
|
UTSW |
6 |
89,691,642 (GRCm39) |
missense |
probably benign |
0.23 |
R0971:Vmn1r40
|
UTSW |
6 |
89,691,272 (GRCm39) |
missense |
probably benign |
0.00 |
R1208:Vmn1r40
|
UTSW |
6 |
89,691,326 (GRCm39) |
missense |
probably benign |
0.13 |
R1208:Vmn1r40
|
UTSW |
6 |
89,691,326 (GRCm39) |
missense |
probably benign |
0.13 |
R1448:Vmn1r40
|
UTSW |
6 |
89,691,558 (GRCm39) |
missense |
probably damaging |
1.00 |
R1739:Vmn1r40
|
UTSW |
6 |
89,691,297 (GRCm39) |
missense |
probably benign |
0.00 |
R2170:Vmn1r40
|
UTSW |
6 |
89,691,957 (GRCm39) |
missense |
probably benign |
0.11 |
R3151:Vmn1r40
|
UTSW |
6 |
89,691,548 (GRCm39) |
missense |
probably benign |
0.01 |
R3804:Vmn1r40
|
UTSW |
6 |
89,691,991 (GRCm39) |
missense |
probably benign |
0.29 |
R5098:Vmn1r40
|
UTSW |
6 |
89,691,930 (GRCm39) |
missense |
probably damaging |
1.00 |
R6015:Vmn1r40
|
UTSW |
6 |
89,691,588 (GRCm39) |
missense |
probably damaging |
1.00 |
R7216:Vmn1r40
|
UTSW |
6 |
89,691,606 (GRCm39) |
missense |
not run |
|
R7555:Vmn1r40
|
UTSW |
6 |
89,692,026 (GRCm39) |
missense |
probably damaging |
1.00 |
R7591:Vmn1r40
|
UTSW |
6 |
89,691,755 (GRCm39) |
missense |
probably benign |
0.00 |
R9056:Vmn1r40
|
UTSW |
6 |
89,691,198 (GRCm39) |
missense |
probably benign |
0.14 |
R9286:Vmn1r40
|
UTSW |
6 |
89,692,079 (GRCm39) |
missense |
probably benign |
0.03 |
R9344:Vmn1r40
|
UTSW |
6 |
89,691,235 (GRCm39) |
missense |
probably benign |
0.00 |
R9449:Vmn1r40
|
UTSW |
6 |
89,691,854 (GRCm39) |
missense |
probably benign |
0.39 |
|
Posted On |
2014-05-07 |