Incidental Mutation 'IGL01940:Fgd6'
ID180861
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Fgd6
Ensembl Gene ENSMUSG00000020021
Gene NameFYVE, RhoGEF and PH domain containing 6
SynonymsEtohd4, ZFYVE24
Accession Numbers
Is this an essential gene? Possibly non essential (E-score: 0.408) question?
Stock #IGL01940
Quality Score
Status
Chromosome10
Chromosomal Location94036001-94145339 bp(+) (GRCm38)
Type of Mutationsplice site (6 bp from exon)
DNA Base Change (assembly) T to A at 94089650 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000020208 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000020208]
PDB Structure
Solution Structure of the Pleckstrin Homology Domain of Mouse Ethanol Decreased 4 Protein [SOLUTION NMR]
Predicted Effect probably null
Transcript: ENSMUST00000020208
SMART Domains Protein: ENSMUSP00000020208
Gene: ENSMUSG00000020021

DomainStartEndE-ValueType
low complexity region 4 18 N/A INTRINSIC
low complexity region 24 34 N/A INTRINSIC
low complexity region 45 60 N/A INTRINSIC
low complexity region 75 88 N/A INTRINSIC
low complexity region 150 161 N/A INTRINSIC
low complexity region 403 418 N/A INTRINSIC
low complexity region 803 821 N/A INTRINSIC
RhoGEF 845 1029 3.09e-46 SMART
PH 1060 1155 6.25e-15 SMART
FYVE 1183 1251 6.93e-28 SMART
low complexity region 1268 1282 N/A INTRINSIC
PH 1303 1398 1.54e-5 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000141143
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca13 T C 11: 9,567,661 probably benign Het
Ahnak A T 19: 9,006,557 D1735V probably benign Het
Alkbh3 G A 2: 93,981,595 T231I probably damaging Het
Ap4e1 T C 2: 127,043,511 V344A probably damaging Het
Brip1 T A 11: 86,064,966 D907V probably benign Het
Clca3a1 A T 3: 144,746,976 M582K probably benign Het
Csf2 G T 11: 54,249,525 P29H probably damaging Het
Cyp2d26 C T 15: 82,792,557 R196H probably benign Het
Dagla A G 19: 10,252,171 V575A probably benign Het
Dimt1 T A 13: 106,948,698 probably benign Het
Ei24 A T 9: 36,782,391 F288L probably damaging Het
Fam107a T C 14: 8,298,766 H120R probably benign Het
Fancl G T 11: 26,459,752 V203F probably damaging Het
Flrt2 A G 12: 95,780,238 Y450C probably damaging Het
Gm21738 G A 14: 19,416,979 S144L probably benign Het
Ift122 A G 6: 115,887,371 probably benign Het
Kcnk13 A G 12: 100,061,424 S253G probably benign Het
Lcp1 A T 14: 75,216,365 N469I probably benign Het
Lrrc24 T C 15: 76,716,057 Y294C probably damaging Het
Odam C A 5: 87,887,333 S52Y possibly damaging Het
Olfr1243 T A 2: 89,527,810 N200I probably damaging Het
Olfr128 C T 17: 37,924,286 T240I probably damaging Het
Olfr641 A G 7: 104,039,922 N42S probably damaging Het
Pkd1 G T 17: 24,579,746 R2676L possibly damaging Het
Plec T C 15: 76,180,329 D1915G probably damaging Het
Ptbp2 A G 3: 119,726,115 V9A possibly damaging Het
Ptk2b A G 14: 66,158,613 I802T probably benign Het
Rabgap1 G T 2: 37,487,067 A304S probably damaging Het
Sema3f T C 9: 107,683,697 probably benign Het
Serpinb3a A T 1: 107,046,185 V332E probably damaging Het
Skil T A 3: 31,111,644 M370K probably benign Het
Slc25a1 T A 16: 17,926,440 Y209F probably benign Het
Smim15 A G 13: 108,047,630 K57E probably damaging Het
Taar3 T A 10: 23,949,957 C134S probably damaging Het
Tns4 C T 11: 99,068,221 S684N probably benign Het
Vmn2r58 A G 7: 41,837,647 V608A probably benign Het
Zbtb26 A T 2: 37,435,975 C350S possibly damaging Het
Other mutations in Fgd6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00764:Fgd6 APN 10 94043634 missense probably benign 0.01
IGL00975:Fgd6 APN 10 94134076 missense probably damaging 0.98
IGL01366:Fgd6 APN 10 94043476 missense possibly damaging 0.71
IGL01958:Fgd6 APN 10 94138308 missense probably benign 0.25
IGL01988:Fgd6 APN 10 94074335 splice site probably benign
IGL02019:Fgd6 APN 10 94133354 missense probably damaging 1.00
IGL02074:Fgd6 APN 10 94127435 missense probably damaging 1.00
IGL02227:Fgd6 APN 10 94134084 missense probably damaging 1.00
IGL02262:Fgd6 APN 10 94125628 missense probably damaging 0.98
IGL02353:Fgd6 APN 10 94138396 missense possibly damaging 0.82
IGL02360:Fgd6 APN 10 94138396 missense possibly damaging 0.82
IGL02425:Fgd6 APN 10 94074202 missense probably benign 0.00
IGL02526:Fgd6 APN 10 94100511 missense probably benign 0.21
IGL02607:Fgd6 APN 10 94044448 missense possibly damaging 0.94
IGL02741:Fgd6 APN 10 94123290 missense possibly damaging 0.65
IGL02870:Fgd6 APN 10 94045164 missense probably damaging 1.00
IGL02884:Fgd6 APN 10 94045639 splice site probably benign
IGL02995:Fgd6 APN 10 94045480 nonsense probably null
IGL03189:Fgd6 APN 10 94044456 missense probably benign 0.26
IGL03258:Fgd6 APN 10 94133353 missense probably benign 0.44
IGL03396:Fgd6 APN 10 94044456 missense probably benign 0.26
FR4449:Fgd6 UTSW 10 94044320 small deletion probably benign
R0257:Fgd6 UTSW 10 94043915 missense probably benign 0.11
R0926:Fgd6 UTSW 10 94135047 missense probably benign 0.40
R1325:Fgd6 UTSW 10 94127427 missense probably damaging 1.00
R1422:Fgd6 UTSW 10 94045372 missense probably damaging 1.00
R1491:Fgd6 UTSW 10 94044832 missense probably benign 0.06
R1593:Fgd6 UTSW 10 94045032 missense probably damaging 1.00
R1624:Fgd6 UTSW 10 94137436 missense probably benign 0.19
R1929:Fgd6 UTSW 10 94045006 missense probably benign 0.01
R2064:Fgd6 UTSW 10 94045041 missense probably damaging 0.98
R2965:Fgd6 UTSW 10 94044194 missense probably benign 0.03
R2966:Fgd6 UTSW 10 94044194 missense probably benign 0.03
R3889:Fgd6 UTSW 10 94089637 missense probably damaging 1.00
R4094:Fgd6 UTSW 10 94043434 missense probably damaging 1.00
R4605:Fgd6 UTSW 10 94044355 missense probably benign 0.12
R4883:Fgd6 UTSW 10 94139853 missense probably benign 0.00
R5217:Fgd6 UTSW 10 94134077 missense possibly damaging 0.90
R5473:Fgd6 UTSW 10 94044676 missense probably benign 0.00
R5606:Fgd6 UTSW 10 94138328 nonsense probably null
R5644:Fgd6 UTSW 10 94134050 missense possibly damaging 0.80
R6051:Fgd6 UTSW 10 94137565 critical splice donor site probably null
R6258:Fgd6 UTSW 10 94044299 missense probably benign 0.00
R6735:Fgd6 UTSW 10 94074320 missense possibly damaging 0.94
Posted On2014-05-07