Mutagenetix > Incidental Mutation

Incidental Mutation 'R5751:Emc2'

462723

Institutional Source

Beutler Lab

Gene Symbol

Emc2

Ensembl Gene

ENSMUSG00000022337

Gene Name

ER membrane protein complex subunit 2

Synonyms

Ttc35, 4921531G14Rik

MMRRC Submission

043201-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.917) question?

Stock #

R5751 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

43340625-43391159 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

A to G at 43360453 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000022962 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022962]

AlphaFold

Q9CRD2

Predicted Effect

probably null
Transcript: ENSMUST00000022962

SMART Domains

Protein: ENSMUSP00000022962
Gene: ENSMUSG00000022337

Domain	Start	End	E-Value	Type
coiled coil region	13	36	N/A	INTRINSIC
Pfam:TPR_2	88	120	6.8e-5	PFAM
Pfam:TPR_19	98	151	5.9e-8	PFAM
Pfam:TPR_19	131	198	3.7e-8	PFAM
Pfam:TPR_2	155	188	2.4e-6	PFAM
Pfam:TPR_8	155	188	1.4e-4	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000227055

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228864

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.3%
20x: 95.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 37 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acacb	A	G	5: 114,368,893 (GRCm39)	T1704A	possibly damaging	Het
Adam6a	T	A	12: 113,508,447 (GRCm39)	D273E	possibly damaging	Het
Adgrv1	T	A	13: 81,670,355 (GRCm39)	L1610F	probably damaging	Het
Ago2	C	T	15: 73,000,172 (GRCm39)		probably null	Het
Apob	T	A	12: 8,062,619 (GRCm39)	Y87*	probably null	Het
Aqp7	G	A	4: 41,035,510 (GRCm39)	T115I	probably benign	Het
Atp7b	A	G	8: 22,508,144 (GRCm39)	V599A	probably damaging	Het
Dnah1	T	A	14: 31,032,863 (GRCm39)	I391F	probably benign	Het
Gbp9	G	T	5: 105,229,124 (GRCm39)	Q508K	probably benign	Het
Grpel1	C	T	5: 36,626,811 (GRCm39)	T31M	probably benign	Het
Gtf3c4	C	T	2: 28,717,511 (GRCm39)	A790T	probably damaging	Het
Hmcn1	A	G	1: 150,449,305 (GRCm39)	C115R	probably damaging	Het
Ik	G	A	18: 36,886,566 (GRCm39)	R346H	probably benign	Het
Ldc1	A	C	4: 130,114,234 (GRCm39)	V61G	probably benign	Het
Lhx3	A	G	2: 26,091,173 (GRCm39)	S379P	probably benign	Het
Mocs1	A	G	17: 49,756,766 (GRCm39)		probably null	Het
Mycbp2	C	A	14: 103,385,986 (GRCm39)	V3457F	probably damaging	Het
Or14j7	A	T	17: 38,234,861 (GRCm39)	I135L	probably benign	Het
Or4a2	A	T	2: 89,248,031 (GRCm39)	I242N	probably damaging	Het
Or5an6	G	A	19: 12,371,780 (GRCm39)	R51K	probably benign	Het
Orc5	C	T	5: 22,704,969 (GRCm39)		probably null	Het
Phf20	T	C	2: 156,109,261 (GRCm39)	S203P	probably benign	Het
Pkd1l1	T	C	11: 8,817,204 (GRCm39)	S1815G	possibly damaging	Het
Pnpla7	T	C	2: 24,871,790 (GRCm39)	V11A	probably damaging	Het
Ranbp2	T	C	10: 58,300,086 (GRCm39)		probably null	Het
Ranbp3l	A	G	15: 9,063,169 (GRCm39)	D326G	probably damaging	Het
Rsph4a	C	T	10: 33,781,789 (GRCm39)	A213V	probably damaging	Het
Sema3b	A	G	9: 107,476,913 (GRCm39)	S570P	probably benign	Het
Spata31d1b	T	A	13: 59,866,787 (GRCm39)	C1312S	probably benign	Het
Sphkap	G	T	1: 83,253,618 (GRCm39)	T1377K	probably benign	Het
Stk32a	A	T	18: 43,438,085 (GRCm39)	R195W	possibly damaging	Het
Tacr2	T	C	10: 62,088,769 (GRCm39)	I58T	probably damaging	Het
Tmem200c	A	T	17: 69,147,547 (GRCm39)	K43N	probably damaging	Het
Tnik	T	C	3: 28,648,241 (GRCm39)	M431T	probably benign	Het
Uckl1	A	G	2: 181,216,245 (GRCm39)	S167P	possibly damaging	Het
Vmn2r90	A	G	17: 17,954,128 (GRCm39)	Y764C	probably damaging	Het
Zan	C	T	5: 137,408,423 (GRCm39)		probably null	Het

Other mutations in Emc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01359:Emc2	APN	15	43,375,145 (GRCm39)	missense	probably damaging	1.00
IGL02815:Emc2	APN	15	43,371,326 (GRCm39)	splice site	probably benign
IGL03211:Emc2	APN	15	43,371,068 (GRCm39)	nonsense	probably null
IGL03238:Emc2	APN	15	43,371,249 (GRCm39)	splice site	probably null
R0433:Emc2	UTSW	15	43,360,520 (GRCm39)	splice site	probably null
R1965:Emc2	UTSW	15	43,390,863 (GRCm39)	missense	probably damaging	1.00
R2373:Emc2	UTSW	15	43,377,154 (GRCm39)	missense	probably damaging	1.00
R2507:Emc2	UTSW	15	43,375,094 (GRCm39)	critical splice acceptor site	probably null
R4986:Emc2	UTSW	15	43,375,180 (GRCm39)	missense	probably benign	0.29
R5212:Emc2	UTSW	15	43,374,240 (GRCm39)	missense	probably damaging	1.00
R5368:Emc2	UTSW	15	43,375,207 (GRCm39)	critical splice donor site	probably null
R8136:Emc2	UTSW	15	43,375,202 (GRCm39)	missense	probably benign	0.07
R9242:Emc2	UTSW	15	43,358,639 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- CTTTAATGCCACAGTCTCAAAACTC -3'
(R):5'- TTACTAGGGAGCAGGAAATGTC -3'

Sequencing Primer
(F):5'- CCACTGTATGTACATGAAATTAGTGG -3'
(R):5'- CTAGGGAGCAGGAAATGTCTTTAAAG -3'

Posted On

2017-03-01