Mutagenetix > Incidental Mutation

Incidental Mutation 'R6165:Ghdc'

490103

Institutional Source

Beutler Lab

Gene Symbol

Ghdc

Ensembl Gene

ENSMUSG00000017747

Gene Name

GH3 domain containing

Synonyms

D11Lgp1e

MMRRC Submission

044311-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.118) question?

Stock #

R6165 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

100656852-100661772 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to G at 100659928 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Alanine at position 273 (E273A)

Ref Sequence

ENSEMBL: ENSMUSP00000017891 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000017891] [ENSMUST00000139341]

AlphaFold

Q99J23

Predicted Effect

possibly damaging
Transcript: ENSMUST00000017891
AA Change: E273A

PolyPhen 2 Score 0.698 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000017891
Gene: ENSMUSG00000017747
AA Change: E273A

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	101	114	N/A	INTRINSIC
Pfam:GH3	177	519	1e-62	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000139341

SMART Domains

Protein: ENSMUSP00000114260
Gene: ENSMUSG00000017747

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
low complexity region	101	114	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147682

Coding Region Coverage

1x: 99.9%
3x: 99.5%
10x: 97.9%
20x: 94.1%

Validation Efficiency

98% (47/48)

Allele List at MGI

Other mutations in this stock

Total: 47 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ankrd35	A	G	3: 96,590,623 (GRCm39)	E303G	possibly damaging	Het
Atosa	A	G	9: 74,932,954 (GRCm39)	T974A	probably damaging	Het
C2cd5	T	C	6: 142,995,954 (GRCm39)	T389A	possibly damaging	Het
Catsperb	T	A	12: 101,542,075 (GRCm39)	Y592N	possibly damaging	Het
Cfap91	A	G	16: 38,154,173 (GRCm39)	F124S	possibly damaging	Het
Cnot9	T	C	1: 74,567,952 (GRCm39)	V280A	probably benign	Het
Cyld	A	G	8: 89,473,561 (GRCm39)	I927V	possibly damaging	Het
Etfdh	A	T	3: 79,512,251 (GRCm39)	S490T	probably benign	Het
Fance	C	T	17: 28,545,068 (GRCm39)	R150C	probably benign	Het
Far1	A	G	7: 113,153,425 (GRCm39)	K353E	probably benign	Het
Fbn1	T	C	2: 125,174,283 (GRCm39)	I1858V	probably damaging	Het
Frem1	T	C	4: 82,874,492 (GRCm39)	K1359E	probably benign	Het
Gpt	A	G	15: 76,582,170 (GRCm39)	D209G	probably benign	Het
Hspb7	T	C	4: 141,149,862 (GRCm39)	F83L	probably benign	Het
Itga7	A	G	10: 128,778,804 (GRCm39)	I306M	probably benign	Het
Itgb5	A	G	16: 33,719,612 (GRCm39)	E261G	probably benign	Het
Kcnj14	G	T	7: 45,469,424 (GRCm39)	A27E	possibly damaging	Het
Kif13b	A	G	14: 64,979,760 (GRCm39)	H470R	probably damaging	Het
Macroh2a1	A	T	13: 56,252,268 (GRCm39)	N108K	probably damaging	Het
Morc3	T	C	16: 93,638,271 (GRCm39)	F18L	probably damaging	Het
Mrgprb8	T	A	7: 48,038,565 (GRCm39)	C79S	possibly damaging	Het
Mroh2b	T	A	15: 4,947,832 (GRCm39)	M549K	probably benign	Het
Msl1	T	C	11: 98,695,673 (GRCm39)	V563A	probably damaging	Het
Nwd1	C	T	8: 73,388,814 (GRCm39)	R81W	probably damaging	Het
Or5b124	A	T	19: 13,610,507 (GRCm39)	I11F	possibly damaging	Het
Or5b124	C	T	19: 13,610,952 (GRCm39)	A159V	probably benign	Het
Phf2	C	A	13: 48,967,341 (GRCm39)		probably null	Het
Pjvk	T	G	2: 76,480,562 (GRCm39)		probably null	Het
Rgl2	A	G	17: 34,150,739 (GRCm39)	T66A	probably benign	Het
Rsf1	ATGGCG	ATGGCGACGGTGGCG	7: 97,229,111 (GRCm39)		probably benign	Het
Rtkn	G	T	6: 83,122,944 (GRCm39)	E67D	probably damaging	Het
Serpinb9	T	A	13: 33,192,807 (GRCm39)	F121L	possibly damaging	Het
Slc34a1	G	A	13: 23,999,053 (GRCm39)	V149I	probably benign	Het
Sobp	A	G	10: 42,898,599 (GRCm39)	S329P	probably damaging	Het
Syne1	A	T	10: 5,375,678 (GRCm39)	L138Q	probably damaging	Het
Tfr2	T	A	5: 137,578,519 (GRCm39)	V449D	probably damaging	Het
Tmem151b	T	C	17: 45,856,711 (GRCm39)	Y243C	probably damaging	Het
Trank1	T	C	9: 111,220,940 (GRCm39)	V2559A	probably benign	Het
Trim35	T	C	14: 66,546,654 (GRCm39)	Y474H	probably damaging	Het
Uso1	A	T	5: 92,335,126 (GRCm39)	L495F	probably damaging	Het
Wdr24	A	G	17: 26,045,395 (GRCm39)	I377V	probably benign	Het
Xpo5	T	A	17: 46,546,883 (GRCm39)	V878D	possibly damaging	Het
Zfc3h1	A	G	10: 115,256,574 (GRCm39)	I1515V	probably benign	Het
Zfp319	CA	C	8: 96,054,733 (GRCm39)	489	probably null	Het
Zfp384	T	G	6: 125,001,896 (GRCm39)		probably null	Het
Zfp704	G	T	3: 9,508,946 (GRCm39)	P416T	probably benign	Het
Zfr	C	T	15: 12,146,331 (GRCm39)	A294V	unknown	Het

Other mutations in Ghdc

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R1489:Ghdc	UTSW	11	100,659,083 (GRCm39)	missense	probably benign	0.39
R1568:Ghdc	UTSW	11	100,659,331 (GRCm39)	missense	probably benign	0.03
R1945:Ghdc	UTSW	11	100,660,031 (GRCm39)	missense	probably benign	0.10
R1999:Ghdc	UTSW	11	100,660,018 (GRCm39)	missense	probably benign	0.04
R2150:Ghdc	UTSW	11	100,660,018 (GRCm39)	missense	probably benign	0.04
R4779:Ghdc	UTSW	11	100,660,929 (GRCm39)	missense	possibly damaging	0.93
R4807:Ghdc	UTSW	11	100,661,051 (GRCm39)	missense	probably damaging	1.00
R4910:Ghdc	UTSW	11	100,657,814 (GRCm39)	missense	probably benign	0.26
R4952:Ghdc	UTSW	11	100,659,977 (GRCm39)	missense	probably damaging	1.00
R5001:Ghdc	UTSW	11	100,657,660 (GRCm39)	missense	probably damaging	1.00
R5220:Ghdc	UTSW	11	100,660,543 (GRCm39)	missense	probably damaging	0.98
R5422:Ghdc	UTSW	11	100,660,020 (GRCm39)	missense	probably benign	0.03
R5926:Ghdc	UTSW	11	100,659,063 (GRCm39)	missense	possibly damaging	0.78
R7076:Ghdc	UTSW	11	100,660,540 (GRCm39)	missense	possibly damaging	0.75
R7299:Ghdc	UTSW	11	100,658,942 (GRCm39)	missense	possibly damaging	0.47
R7314:Ghdc	UTSW	11	100,659,928 (GRCm39)	missense	probably damaging	0.99
R7655:Ghdc	UTSW	11	100,660,493 (GRCm39)	missense	probably benign	0.04
R7656:Ghdc	UTSW	11	100,660,493 (GRCm39)	missense	probably benign	0.04
R9419:Ghdc	UTSW	11	100,661,081 (GRCm39)	missense	probably damaging	0.96
R9556:Ghdc	UTSW	11	100,658,861 (GRCm39)	missense	possibly damaging	0.90
R9684:Ghdc	UTSW	11	100,661,091 (GRCm39)	missense	probably benign	0.02
R9710:Ghdc	UTSW	11	100,658,863 (GRCm39)	missense	probably benign	0.00
Z1176:Ghdc	UTSW	11	100,660,243 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TCGGCTGTTAGTCAGAGCTAG -3'
(R):5'- TGATGGTGAAGAACTGGCTG -3'

Sequencing Primer
(F):5'- GCTGTTAGTCAGAGCTAGTAACCC -3'
(R):5'- TGAGGCCATAGCAGCTGG -3'

Posted On

2017-10-10