Mutagenetix > Incidental Mutation

Incidental Mutation 'R6245:Ccdc159'

505530

Institutional Source

Beutler Lab

Gene Symbol

Ccdc159

Ensembl Gene

ENSMUSG00000006241

Gene Name

coiled-coil domain containing 159

Synonyms

2510048L02Rik

MMRRC Submission

044403-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6245 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

21838767-21847168 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 21846864 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 244 (S244P)

Ref Sequence

ENSEMBL: ENSMUSP00000148950 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000006403] [ENSMUST00000046371] [ENSMUST00000170304] [ENSMUST00000188468] [ENSMUST00000190387] [ENSMUST00000214734] [ENSMUST00000216710]

AlphaFold

Q8C963

Predicted Effect

possibly damaging
Transcript: ENSMUST00000006403
AA Change: S383P

PolyPhen 2 Score 0.827 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000006403
Gene: ENSMUSG00000006241
AA Change: S383P

Domain	Start	End	E-Value	Type
low complexity region	42	52	N/A	INTRINSIC
coiled coil region	152	172	N/A	INTRINSIC
low complexity region	217	227	N/A	INTRINSIC
coiled coil region	261	288	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000046371

SMART Domains

Protein: ENSMUSP00000038616
Gene: ENSMUSG00000040563

Domain	Start	End	E-Value	Type
transmembrane domain	12	34	N/A	INTRINSIC
transmembrane domain	69	91	N/A	INTRINSIC
low complexity region	94	106	N/A	INTRINSIC
acidPPc	130	281	2.31e-9	SMART
low complexity region	363	422	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000170304
AA Change: S391P

PolyPhen 2 Score 0.827 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000126474
Gene: ENSMUSG00000006241
AA Change: S391P

Domain	Start	End	E-Value	Type
low complexity region	50	60	N/A	INTRINSIC
coiled coil region	160	180	N/A	INTRINSIC
low complexity region	225	235	N/A	INTRINSIC
coiled coil region	269	296	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000188468

SMART Domains

Protein: ENSMUSP00000140166
Gene: ENSMUSG00000040563

Domain	Start	End	E-Value	Type
signal peptide	1	32	N/A	INTRINSIC
transmembrane domain	46	63	N/A	INTRINSIC
low complexity region	69	81	N/A	INTRINSIC
acidPPc	105	256	1.1e-11	SMART
low complexity region	338	397	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000190387

SMART Domains

Protein: ENSMUSP00000139727
Gene: ENSMUSG00000040563

Domain	Start	End	E-Value	Type
transmembrane domain	12	34	N/A	INTRINSIC
transmembrane domain	69	91	N/A	INTRINSIC
low complexity region	94	106	N/A	INTRINSIC
acidPPc	130	281	2.31e-9	SMART
low complexity region	322	336	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000214734

Predicted Effect

probably damaging
Transcript: ENSMUST00000216710
AA Change: S244P

PolyPhen 2 Score 0.987 (Sensitivity: 0.73; Specificity: 0.96)

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.6%
20x: 96.0%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	A	G	11: 110,026,249 (GRCm39)	I937T	probably damaging	Het
Adgrl3	T	A	5: 81,836,403 (GRCm39)	N720K	probably benign	Het
Akr1c21	T	G	13: 4,625,231 (GRCm39)	V54G	possibly damaging	Het
Alpi	G	T	1: 87,028,556 (GRCm39)	D111E	probably damaging	Het
Armc3	C	T	2: 19,253,516 (GRCm39)	T219M	probably damaging	Het
Bms1	T	A	6: 118,373,797 (GRCm39)	E780V	probably damaging	Het
Cdon	T	C	9: 35,388,235 (GRCm39)	W737R	probably damaging	Het
Chdh	T	A	14: 29,757,262 (GRCm39)	V395D	probably damaging	Het
Col22a1	C	A	15: 71,845,665 (GRCm39)	D366Y	probably damaging	Het
Cplane1	T	C	15: 8,207,902 (GRCm39)	Y218H	probably benign	Het
Crnkl1	T	A	2: 145,770,051 (GRCm39)	N264I	probably benign	Het
Ctnnd2	T	C	15: 30,905,894 (GRCm39)	L847P	probably damaging	Het
Cyp4a31	A	C	4: 115,428,545 (GRCm39)	T382P	possibly damaging	Het
Dcaf8	A	T	1: 171,993,434 (GRCm39)	M1L	probably benign	Het
Ddx31	T	A	2: 28,734,994 (GRCm39)	F52I	probably benign	Het
Dynlt5	A	G	4: 102,845,864 (GRCm39)	N32S	probably benign	Het
Efcab3	A	T	11: 104,675,834 (GRCm39)	Y1542F	probably benign	Het
Eps15	G	A	4: 109,240,063 (GRCm39)	S852N	possibly damaging	Het
Fchsd1	A	T	18: 38,095,828 (GRCm39)	L552Q	probably damaging	Het
Fetub	C	T	16: 22,751,081 (GRCm39)	R143C	probably damaging	Het
Frem2	T	C	3: 53,563,245 (GRCm39)	M421V	probably benign	Het
Gm1110	T	G	9: 26,832,043 (GRCm39)	H36P	probably benign	Het
Hadha	C	T	5: 30,325,042 (GRCm39)		probably null	Het
Hspa4	C	T	11: 53,153,766 (GRCm39)	E702K	probably benign	Het
Intu	C	A	3: 40,629,756 (GRCm39)	T362K	probably damaging	Het
Jaml	C	T	9: 45,009,217 (GRCm39)	T248I	probably damaging	Het
Kcnj1	A	T	9: 32,308,163 (GRCm39)	S176C	probably damaging	Het
Kcnj9	A	G	1: 172,153,704 (GRCm39)	L140P	probably damaging	Het
Kif7	T	C	7: 79,351,891 (GRCm39)	K957R	probably damaging	Het
Klc4	T	A	17: 46,947,605 (GRCm39)	I366F	probably damaging	Het
Lamb2	A	G	9: 108,365,398 (GRCm39)		probably null	Het
Madd	T	C	2: 91,008,449 (GRCm39)	D151G	probably benign	Het
Man2a1	C	A	17: 65,017,821 (GRCm39)	A689E	probably damaging	Het
Mapk8ip1	C	A	2: 92,219,589 (GRCm39)	G81C	probably damaging	Het
Msmp	T	C	4: 43,583,909 (GRCm39)	Y48C	probably damaging	Het
Muc6	T	C	7: 141,235,086 (GRCm39)	N567S	probably damaging	Het
Nrap	A	G	19: 56,342,653 (GRCm39)	Y748H	probably damaging	Het
Nrap	C	T	19: 56,368,307 (GRCm39)	A192T	possibly damaging	Het
Or2p2	T	A	13: 21,256,860 (GRCm39)	T204S	possibly damaging	Het
Or2y14	T	A	11: 49,404,992 (GRCm39)	F176I	possibly damaging	Het
Or5w15	G	C	2: 87,568,240 (GRCm39)	Q143E	possibly damaging	Het
Pcdhb8	T	G	18: 37,490,222 (GRCm39)	D633E	possibly damaging	Het
Pcdhb9	G	A	18: 37,536,207 (GRCm39)	V734M	probably damaging	Het
Plscr1	T	C	9: 92,141,374 (GRCm39)	Y21H	unknown	Het
Ptk2b	G	T	14: 66,400,515 (GRCm39)	P767T	probably damaging	Het
Ptprz1	T	C	6: 23,051,989 (GRCm39)	Y1424H	probably damaging	Het
Sec31a	T	A	5: 100,534,043 (GRCm39)	Q118L	probably benign	Het
Selenop	A	G	15: 3,304,216 (GRCm39)	S21G	probably damaging	Het
Shank1	G	A	7: 44,001,677 (GRCm39)	S1132N	unknown	Het
Slf1	A	G	13: 77,232,502 (GRCm39)	L534P	probably damaging	Het
Sparcl1	T	A	5: 104,233,013 (GRCm39)	H596L	probably damaging	Het
Spocd1	C	T	4: 129,850,901 (GRCm39)		probably null	Het
Tbc1d24	A	T	17: 24,404,967 (GRCm39)	I59N	probably damaging	Het
Tjp3	G	A	10: 81,113,110 (GRCm39)	T580I	probably benign	Het
Tmem154	C	T	3: 84,591,603 (GRCm39)	T51M	possibly damaging	Het
Tmem8b	G	A	4: 43,690,246 (GRCm39)	V894I	probably benign	Het
Trbv20	A	T	6: 41,165,840 (GRCm39)	L88F	possibly damaging	Het
Tssk2	A	C	16: 17,716,812 (GRCm39)	I72L	possibly damaging	Het
Tub	T	A	7: 108,626,265 (GRCm39)	I267N	probably damaging	Het
Vmn2r104	A	T	17: 20,261,829 (GRCm39)	F434I	possibly damaging	Het
Vmn2r42	T	C	7: 8,195,733 (GRCm39)	N471S	probably damaging	Het
Vmn2r94	C	G	17: 18,478,385 (GRCm39)	G121R	probably damaging	Het
Wdr72	T	C	9: 74,055,505 (GRCm39)	S245P	probably damaging	Het
Zbtb42	A	G	12: 112,645,969 (GRCm39)	Y48C	probably damaging	Het
Zdbf2	T	C	1: 63,343,592 (GRCm39)	V657A	possibly damaging	Het
Zfp768	A	T	7: 126,943,263 (GRCm39)	C288*	probably null	Het
Zfp988	T	A	4: 147,416,470 (GRCm39)	C301*	probably null	Het

Other mutations in Ccdc159

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00425:Ccdc159	APN	9	21,840,765 (GRCm39)	missense	possibly damaging	0.83
IGL02322:Ccdc159	APN	9	21,840,669 (GRCm39)	missense	possibly damaging	0.46
IGL03156:Ccdc159	APN	9	21,840,771 (GRCm39)	missense	probably benign
IGL03382:Ccdc159	APN	9	21,842,992 (GRCm39)	splice site	probably null
R1622:Ccdc159	UTSW	9	21,840,666 (GRCm39)	missense	possibly damaging	0.66
R2076:Ccdc159	UTSW	9	21,840,802 (GRCm39)	splice site	probably null
R3905:Ccdc159	UTSW	9	21,845,815 (GRCm39)	critical splice donor site	probably null
R4083:Ccdc159	UTSW	9	21,840,699 (GRCm39)	missense	possibly damaging	0.83
R4625:Ccdc159	UTSW	9	21,840,762 (GRCm39)	missense	probably benign
R4700:Ccdc159	UTSW	9	21,839,027 (GRCm39)	splice site	probably null
R5004:Ccdc159	UTSW	9	21,844,241 (GRCm39)	missense	probably damaging	1.00
R5743:Ccdc159	UTSW	9	21,840,686 (GRCm39)	missense	probably benign	0.19
R7263:Ccdc159	UTSW	9	21,843,007 (GRCm39)	missense	probably benign	0.04
R8171:Ccdc159	UTSW	9	21,845,007 (GRCm39)	missense	possibly damaging	0.82
R8477:Ccdc159	UTSW	9	21,844,223 (GRCm39)	missense	probably damaging	1.00
R8712:Ccdc159	UTSW	9	21,845,051 (GRCm39)	missense	probably benign	0.27
R9649:Ccdc159	UTSW	9	21,840,672 (GRCm39)	missense	possibly damaging	0.66

Predicted Primers

PCR Primer
(F):5'- TCAGTCACCCAAGGGATGTG -3'
(R):5'- TGCTCAAGCTACAGGGAGAG -3'

Sequencing Primer
(F):5'- CCAAGGGATGTGGGTGTC -3'
(R):5'- AGAACTCAGGGTTGCCAAC -3'

Posted On

2018-02-28