Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02892:Riok1'

363268

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Riok1

Ensembl Gene

ENSMUSG00000021428

Gene Name

RIO kinase 1

Synonyms

3110046C13Rik, 5430416A05Rik

Accession Numbers

Essential gene?

Probably essential (E-score: 0.957) question?

Stock #

IGL02892

Quality Score

Status

Chromosome

Chromosomal Location

38220971-38245409 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

G to T at 38224041 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000153217 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021866] [ENSMUST00000074969] [ENSMUST00000089840] [ENSMUST00000110233] [ENSMUST00000131066] [ENSMUST00000223656] [ENSMUST00000224477] [ENSMUST00000226110]

AlphaFold

Q922Q2

Predicted Effect

probably benign
Transcript: ENSMUST00000021866

SMART Domains

Protein: ENSMUSP00000021866
Gene: ENSMUSG00000021428

Domain	Start	End	E-Value	Type
low complexity region	54	75	N/A	INTRINSIC
RIO	150	386	5.1e-134	SMART
Blast:RIO	465	531	4e-12	BLAST
low complexity region	551	567	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000074969

SMART Domains

Protein: ENSMUSP00000074499
Gene: ENSMUSG00000044566

Domain	Start	End	E-Value	Type
Pfam:CAGE1	1	526	5.1e-292	PFAM
low complexity region	664	682	N/A	INTRINSIC
coiled coil region	778	811	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000089840

SMART Domains

Protein: ENSMUSP00000087278
Gene: ENSMUSG00000044566

Domain	Start	End	E-Value	Type
Pfam:CAGE1	1	420	6.8e-230	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000110233

SMART Domains

Protein: ENSMUSP00000105862
Gene: ENSMUSG00000044566

Domain	Start	End	E-Value	Type
Pfam:CAGE1	1	526	2.4e-255	PFAM
low complexity region	664	682	N/A	INTRINSIC
coiled coil region	778	811	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000131066

SMART Domains

Protein: ENSMUSP00000122393
Gene: ENSMUSG00000044566

Domain	Start	End	E-Value	Type
Pfam:CAGE1	1	318	6.5e-167	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000223656

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000223910

Predicted Effect

probably benign
Transcript: ENSMUST00000224477

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000225954

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000226006

Predicted Effect

probably benign
Transcript: ENSMUST00000226110

Predicted Effect

probably benign
Transcript: ENSMUST00000224956

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000224683

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: This gene encodes a member of the RIO family of atypical serine protein kinases. A similar protein in humans is a component of the protein arginine methyltransferase 5 complex that specifically recruits the RNA-binding protein nucleolin as a methylation substrate. [provided by RefSeq, Feb 2011]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcd4	A	T	12: 84,651,771 (GRCm39)	L493*	probably null	Het
Adam32	T	A	8: 25,368,727 (GRCm39)		probably benign	Het
Alpk1	T	C	3: 127,473,771 (GRCm39)	D744G	possibly damaging	Het
Arhgef12	A	G	9: 42,912,268 (GRCm39)	V530A	possibly damaging	Het
Baz2b	A	T	2: 59,731,080 (GRCm39)	N2095K	probably damaging	Het
Btnl2	A	T	17: 34,581,642 (GRCm39)	Q240L	possibly damaging	Het
Cd96	T	C	16: 45,870,160 (GRCm39)		probably null	Het
Cep350	G	A	1: 155,744,552 (GRCm39)	T2089I	possibly damaging	Het
Chd9	T	C	8: 91,703,543 (GRCm39)		probably benign	Het
Cib4	C	T	5: 30,702,051 (GRCm39)		probably benign	Het
Cilp2	T	C	8: 70,336,970 (GRCm39)	T280A	probably benign	Het
Coq5	T	A	5: 115,432,876 (GRCm39)		probably benign	Het
Cyth3	A	G	5: 143,693,192 (GRCm39)	I339V	possibly damaging	Het
Dcaf7	T	C	11: 105,937,518 (GRCm39)	V47A	possibly damaging	Het
Dcdc2c	A	G	12: 28,585,544 (GRCm39)	I151T	probably benign	Het
Defb7	T	A	8: 19,547,678 (GRCm39)	F61Y	probably benign	Het
Diaph3	T	A	14: 87,104,066 (GRCm39)	K773*	probably null	Het
Dmxl1	A	G	18: 49,992,187 (GRCm39)	N311S	probably damaging	Het
Dnah7b	G	A	1: 46,158,458 (GRCm39)	R347H	possibly damaging	Het
Egflam	C	T	15: 7,319,277 (GRCm39)	V234I	probably benign	Het
Emilin3	C	T	2: 160,751,069 (GRCm39)	V180M	possibly damaging	Het
Fam76b	A	T	9: 13,740,117 (GRCm39)	E50V	probably null	Het
Fat3	A	T	9: 16,288,858 (GRCm39)	Y222N	probably damaging	Het
Grm7	A	G	6: 111,230,981 (GRCm39)	N468S	probably damaging	Het
Gucy1a2	G	T	9: 3,634,471 (GRCm39)	G172C	probably damaging	Het
Hmcn1	A	C	1: 150,551,725 (GRCm39)		probably null	Het
Hydin	G	A	8: 111,325,591 (GRCm39)	V4667M	possibly damaging	Het
Idh2	T	C	7: 79,745,418 (GRCm39)	S408G	probably benign	Het
Kcng4	T	C	8: 120,359,821 (GRCm39)	Q185R	probably benign	Het
Lamp3	A	G	16: 19,494,802 (GRCm39)	V301A	probably damaging	Het
Lrrc23	T	C	6: 124,751,399 (GRCm39)	N220S	probably benign	Het
Lrrc41	T	A	4: 115,946,032 (GRCm39)	M249K	possibly damaging	Het
Ltbp4	T	A	7: 27,010,074 (GRCm39)	D1162V	probably damaging	Het
Mlh1	T	C	9: 111,082,037 (GRCm39)	I229V	probably benign	Het
Or1o11	T	C	17: 37,756,925 (GRCm39)	L160P	probably damaging	Het
Pgap6	A	G	17: 26,338,094 (GRCm39)	Y466C	probably damaging	Het
Plekhg2	T	A	7: 28,062,342 (GRCm39)	D525V	probably damaging	Het
Plin4	T	C	17: 56,412,108 (GRCm39)	K641R	probably damaging	Het
Plxnb2	A	G	15: 89,045,425 (GRCm39)		probably null	Het
Polr1a	T	C	6: 71,908,680 (GRCm39)	S502P	possibly damaging	Het
Prss16	A	G	13: 22,187,220 (GRCm39)	V450A	probably benign	Het
Prss42	G	A	9: 110,628,458 (GRCm39)	V201M	probably damaging	Het
Pus7	A	T	5: 23,959,554 (GRCm39)	N322K	probably damaging	Het
Rmdn3	T	A	2: 118,984,561 (GRCm39)	T64S	probably benign	Het
Rmnd5a	T	A	6: 71,391,798 (GRCm39)	M131L	probably benign	Het
Rtbdn	C	T	8: 85,681,718 (GRCm39)	R170C	probably damaging	Het
Sesn3	T	C	9: 14,226,030 (GRCm39)		probably null	Het
Slc2a6	A	G	2: 26,914,305 (GRCm39)	Y271H	probably benign	Het
Slc5a5	T	G	8: 71,345,161 (GRCm39)	T49P	probably damaging	Het
Slc7a10	T	C	7: 34,894,593 (GRCm39)	V84A	possibly damaging	Het
Slc9a4	A	G	1: 40,623,204 (GRCm39)	T148A	possibly damaging	Het
Smg1	T	A	7: 117,767,178 (GRCm39)		probably benign	Het
Snx19	T	A	9: 30,339,660 (GRCm39)	V266E	probably damaging	Het
Synm	T	A	7: 67,384,804 (GRCm39)	I511F	probably damaging	Het
Tango6	T	A	8: 107,468,642 (GRCm39)		probably benign	Het
Tie1	T	A	4: 118,343,479 (GRCm39)	D128V	probably damaging	Het
Timeless	T	C	10: 128,080,120 (GRCm39)	L423P	probably damaging	Het
Tln1	A	G	4: 43,555,679 (GRCm39)	L145P	probably damaging	Het
Trp53i13	A	T	11: 77,399,121 (GRCm39)	D376E	probably damaging	Het
Ubr4	A	T	4: 139,144,642 (GRCm39)	I1484F	probably damaging	Het
Unc13a	C	T	8: 72,102,554 (GRCm39)	V943M	probably damaging	Het
Usp50	T	C	2: 126,611,822 (GRCm39)	K301R	probably damaging	Het
Vmn1r62	G	T	7: 5,679,202 (GRCm39)	M294I	probably benign	Het
Vps39	A	G	2: 120,153,652 (GRCm39)		probably benign	Het
Vwa8	T	A	14: 79,341,140 (GRCm39)		probably benign	Het
Wdr27	A	T	17: 15,096,438 (GRCm39)	W748R	possibly damaging	Het

Other mutations in Riok1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02116:Riok1	APN	13	38,243,932 (GRCm39)	missense	possibly damaging	0.80
IGL02675:Riok1	APN	13	38,234,219 (GRCm39)	missense	probably damaging	0.99
IGL02952:Riok1	APN	13	38,232,866 (GRCm39)	missense	probably damaging	1.00
IGL03386:Riok1	APN	13	38,241,213 (GRCm39)	nonsense	probably null
IGL03054:Riok1	UTSW	13	38,231,291 (GRCm39)	missense	probably damaging	1.00
R0959:Riok1	UTSW	13	38,241,149 (GRCm39)	missense	probably damaging	0.96
R1423:Riok1	UTSW	13	38,233,090 (GRCm39)	missense	probably damaging	1.00
R1558:Riok1	UTSW	13	38,234,831 (GRCm39)	missense	probably damaging	1.00
R1624:Riok1	UTSW	13	38,221,487 (GRCm39)	missense	probably damaging	1.00
R1717:Riok1	UTSW	13	38,236,926 (GRCm39)	missense	probably damaging	1.00
R1858:Riok1	UTSW	13	38,242,694 (GRCm39)	nonsense	probably null
R1920:Riok1	UTSW	13	38,241,177 (GRCm39)	missense	probably benign	0.27
R2857:Riok1	UTSW	13	38,233,053 (GRCm39)	missense	probably damaging	1.00
R4179:Riok1	UTSW	13	38,232,931 (GRCm39)	missense	probably damaging	1.00
R7052:Riok1	UTSW	13	38,220,991 (GRCm39)	unclassified	probably benign
R7354:Riok1	UTSW	13	38,231,288 (GRCm39)	missense	probably benign	0.15
R7689:Riok1	UTSW	13	38,229,263 (GRCm39)	missense	probably damaging	1.00
R8207:Riok1	UTSW	13	38,236,296 (GRCm39)	missense	probably damaging	1.00
R8432:Riok1	UTSW	13	38,221,468 (GRCm39)	missense	probably benign	0.01
R9617:Riok1	UTSW	13	38,244,016 (GRCm39)	missense	probably benign
R9636:Riok1	UTSW	13	38,242,719 (GRCm39)	critical splice donor site	probably null
R9695:Riok1	UTSW	13	38,242,676 (GRCm39)	missense	possibly damaging	0.88
Z1176:Riok1	UTSW	13	38,242,699 (GRCm39)	missense	possibly damaging	0.95

Posted On

2015-12-18