Mutagenetix > Incidental Mutation

Incidental Mutation 'R9021:Ripk1'

686234

Institutional Source

Beutler Lab

Gene Symbol

Ripk1

Ensembl Gene

ENSMUSG00000021408

Gene Name

receptor (TNFRSF)-interacting serine-threonine kinase 1

Synonyms

Rinp, Rip1

MMRRC Submission

068851-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R9021 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

34186346-34221130 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 34205373 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 284 (E284G)

Ref Sequence

ENSEMBL: ENSMUSP00000021844 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021844] [ENSMUST00000167374]

AlphaFold

Q60855

Predicted Effect

probably benign
Transcript: ENSMUST00000021844
AA Change: E284G

PolyPhen 2 Score 0.380 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000021844
Gene: ENSMUSG00000021408
AA Change: E284G

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	17	286	1.2e-52	PFAM
Pfam:Pkinase	18	286	6.2e-51	PFAM
Pfam:Kinase-like	84	247	7.4e-8	PFAM
Pfam:RHIM	480	538	5.9e-10	PFAM
DEATH	558	654	1.2e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000167374
AA Change: E284G

PolyPhen 2 Score 0.380 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000129831
Gene: ENSMUSG00000021408
AA Change: E284G

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	17	286	5.2e-54	PFAM
Pfam:Pkinase	18	286	1.1e-53	PFAM
Pfam:RHIM	493	539	5.2e-16	PFAM
DEATH	558	654	1.2e-25	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000171137
AA Change: E224G

PolyPhen 2 Score 0.705 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000128511
Gene: ENSMUSG00000021408
AA Change: E224G

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	4	116	2.6e-14	PFAM
Pfam:Pkinase	5	109	1.7e-14	PFAM
Pfam:Pkinase	92	227	2.9e-14	PFAM
Pfam:Pkinase_Tyr	94	227	2.9e-21	PFAM
Pfam:RHIM	421	479	2.3e-10	PFAM
DEATH	499	595	1.2e-25	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

98% (64/65)

MGI Phenotype

PHENOTYPE: Mice homozygous for disruptions in this gene die within 1 and 3 days of birth displaying extensive apoptosis in both lymphoid and adipose tissue. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acad11	A	G	9: 104,003,864 (GRCm39)	D770G	possibly damaging	Het
Amph	G	A	13: 19,284,071 (GRCm39)	G200D	probably benign	Het
Asap2	T	A	12: 21,253,999 (GRCm39)	L170H	possibly damaging	Het
Asap3	T	C	4: 135,966,299 (GRCm39)		probably null	Het
Atxn2l	A	T	7: 126,094,712 (GRCm39)	M595K	probably benign	Het
Bltp1	T	A	3: 37,052,493 (GRCm39)	D3064E	probably benign	Het
Ccnf	A	T	17: 24,445,679 (GRCm39)	Y522*	probably null	Het
Ceacam5	A	T	7: 17,448,877 (GRCm39)	Y81F	possibly damaging	Het
Chd2	A	T	7: 73,091,393 (GRCm39)	M1616K	probably benign	Het
Clint1	T	A	11: 45,797,042 (GRCm39)	S374R	probably benign	Het
Col6a6	A	T	9: 105,586,745 (GRCm39)	F1759I	possibly damaging	Het
Crocc	T	A	4: 140,749,674 (GRCm39)	I1487F	probably benign	Het
Dll4	TC	T	2: 119,163,054 (GRCm39)		probably null	Het
Dop1a	T	C	9: 86,402,490 (GRCm39)	I1230T	probably benign	Het
Dsp	A	T	13: 38,380,808 (GRCm39)	I2518L	possibly damaging	Het
Eps8l2	G	T	7: 140,936,117 (GRCm39)	V224L	possibly damaging	Het
Etv1	T	C	12: 38,830,971 (GRCm39)	V13A	probably benign	Het
Fam78a	T	C	2: 31,959,313 (GRCm39)	M266V	probably benign	Het
Fam81a	A	G	9: 70,017,538 (GRCm39)		probably null	Het
Fhad1	T	C	4: 141,709,620 (GRCm39)	I245V	probably damaging	Het
Flot2	T	C	11: 77,949,805 (GRCm39)	V378A	probably benign	Het
Fras1	T	A	5: 96,888,609 (GRCm39)	S2718R	probably damaging	Het
Gata3os	T	A	2: 9,887,345 (GRCm39)		probably benign	Het
Gm14305	A	G	2: 176,413,167 (GRCm39)	K353R	possibly damaging	Het
Inppl1	A	C	7: 101,480,915 (GRCm39)	V315G	probably damaging	Het
Kbtbd6	A	T	14: 79,690,822 (GRCm39)	I506F	probably damaging	Het
Klf6	G	C	13: 5,915,160 (GRCm39)	G200R	probably benign	Het
Lrp6	A	G	6: 134,518,930 (GRCm39)	I45T	probably benign	Het
Lrriq4	T	G	3: 30,704,401 (GRCm39)	V143G	probably benign	Het
Map2k2	G	T	10: 80,955,159 (GRCm39)	G217C	probably damaging	Het
Mcm10	T	C	2: 4,997,782 (GRCm39)	N813S	probably benign	Het
Mfng	T	A	15: 78,657,348 (GRCm39)	N42I	probably benign	Het
Mical1	A	G	10: 41,361,141 (GRCm39)	D808G	probably benign	Het
Mmp14	T	C	14: 54,673,632 (GRCm39)	F99L	probably benign	Het
Mroh8	A	T	2: 157,064,787 (GRCm39)	V763E	probably benign	Het
Mycbp2	G	T	14: 103,551,752 (GRCm39)	P193T	probably benign	Het
Myo1b	T	C	1: 51,821,142 (GRCm39)	D447G	possibly damaging	Het
Myoz2	T	A	3: 122,807,284 (GRCm39)		probably benign	Het
Narf	C	A	11: 121,136,209 (GRCm39)	P195Q	probably damaging	Het
Nfatc3	T	A	8: 106,818,745 (GRCm39)	F496I	probably damaging	Het
Nudt13	A	G	14: 20,360,772 (GRCm39)	Y225C	probably damaging	Het
Or10ab5	A	T	7: 108,245,428 (GRCm39)	Y118*	probably null	Het
Or11h4	T	G	14: 50,974,554 (GRCm39)	I22L	probably benign	Het
Or2i1	G	T	17: 37,508,380 (GRCm39)	R85S	possibly damaging	Het
Or56b1	C	T	7: 104,285,291 (GRCm39)	R137C	probably benign	Het
Osbpl10	C	T	9: 114,807,939 (GRCm39)	A65V	unknown	Het
Pdcd2l	A	G	7: 33,885,760 (GRCm39)	L308P	probably damaging	Het
Pitx2	T	A	3: 129,008,432 (GRCm39)		probably null	Het
Pms2	T	A	5: 143,862,744 (GRCm39)	F617Y	probably damaging	Het
Poc1b	A	G	10: 98,980,183 (GRCm39)	N180S	possibly damaging	Het
Poln	T	A	5: 34,286,485 (GRCm39)	M228L	probably benign	Het
Prex1	C	A	2: 166,432,429 (GRCm39)	V707F	possibly damaging	Het
Rasal2	A	T	1: 157,058,514 (GRCm39)	V12D	unknown	Het
Rpa2	T	C	4: 132,499,251 (GRCm39)	W107R	probably damaging	Het
Selp	A	G	1: 163,954,177 (GRCm39)	Y159C	probably damaging	Het
Serpina1a	A	T	12: 103,824,293 (GRCm39)	W30R	probably benign	Het
Skic2	A	G	17: 35,065,579 (GRCm39)	V325A	probably damaging	Het
Slco6d1	A	G	1: 98,371,396 (GRCm39)	R294G	probably benign	Het
Supt5	A	T	7: 28,016,671 (GRCm39)	I737N	probably damaging	Het
Thap11	T	C	8: 106,582,660 (GRCm39)	V223A	probably damaging	Het
Trabd	T	A	15: 88,968,913 (GRCm39)	S144T	possibly damaging	Het
Trim24	T	A	6: 37,933,949 (GRCm39)	S701T	probably damaging	Het
Trim52	C	T	14: 106,344,986 (GRCm39)	P215S	possibly damaging	Het
Vmn1r172	G	T	7: 23,359,749 (GRCm39)	L211F	probably damaging	Het
Vmn2r86	A	C	10: 130,282,934 (GRCm39)	Y561D	probably damaging	Het
Zfp384	C	A	6: 125,013,336 (GRCm39)	A468E		Het
Zfp658	A	G	7: 43,223,381 (GRCm39)	H552R	possibly damaging	Het
Zranb2	T	C	3: 157,250,720 (GRCm39)	V297A	unknown	Het

Other mutations in Ripk1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01443:Ripk1	APN	13	34,199,251 (GRCm39)	missense	probably damaging	0.96
IGL01873:Ripk1	APN	13	34,193,707 (GRCm39)	missense	probably damaging	1.00
IGL02383:Ripk1	APN	13	34,199,227 (GRCm39)	missense	probably damaging	1.00
IGL02478:Ripk1	APN	13	34,194,572 (GRCm39)	missense	probably damaging	1.00
R0115:Ripk1	UTSW	13	34,193,733 (GRCm39)	missense	probably damaging	1.00
R0481:Ripk1	UTSW	13	34,193,733 (GRCm39)	missense	probably damaging	1.00
R0630:Ripk1	UTSW	13	34,211,764 (GRCm39)	missense	probably damaging	1.00
R1105:Ripk1	UTSW	13	34,212,150 (GRCm39)	missense	probably benign
R1528:Ripk1	UTSW	13	34,212,130 (GRCm39)	missense	probably benign	0.01
R1834:Ripk1	UTSW	13	34,199,196 (GRCm39)	missense	probably benign	0.00
R2294:Ripk1	UTSW	13	34,200,991 (GRCm39)	missense	probably benign
R2384:Ripk1	UTSW	13	34,214,026 (GRCm39)	missense	probably benign	0.03
R4510:Ripk1	UTSW	13	34,210,731 (GRCm39)	missense	probably damaging	1.00
R4511:Ripk1	UTSW	13	34,210,731 (GRCm39)	missense	probably damaging	1.00
R4697:Ripk1	UTSW	13	34,211,925 (GRCm39)	nonsense	probably null
R5078:Ripk1	UTSW	13	34,201,082 (GRCm39)	missense	probably damaging	1.00
R5153:Ripk1	UTSW	13	34,197,279 (GRCm39)	missense	probably damaging	1.00
R5974:Ripk1	UTSW	13	34,214,084 (GRCm39)	nonsense	probably null
R6189:Ripk1	UTSW	13	34,216,484 (GRCm39)	missense	probably benign	0.16
R6676:Ripk1	UTSW	13	34,194,587 (GRCm39)	missense	probably damaging	1.00
R6905:Ripk1	UTSW	13	34,211,973 (GRCm39)	missense	probably benign
R6997:Ripk1	UTSW	13	34,201,100 (GRCm39)	missense	probably benign	0.00
R7009:Ripk1	UTSW	13	34,214,045 (GRCm39)	missense	probably damaging	1.00
R7956:Ripk1	UTSW	13	34,193,666 (GRCm39)	missense	probably benign	0.02
R8497:Ripk1	UTSW	13	34,211,934 (GRCm39)	missense	probably damaging	0.98
R8680:Ripk1	UTSW	13	34,214,032 (GRCm39)	missense	possibly damaging	0.54
R9132:Ripk1	UTSW	13	34,212,184 (GRCm39)	missense	probably benign	0.01
R9620:Ripk1	UTSW	13	34,210,806 (GRCm39)	missense	possibly damaging	0.91
Z1177:Ripk1	UTSW	13	34,212,118 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- TGTCTACACACTATGGTAAGTAGCTG -3'
(R):5'- GCTAGCTTACTTCAAATCTCAGC -3'

Sequencing Primer
(F):5'- GGAGGACCTGAGTTTAATCATCAC -3'
(R):5'- GCAACAAATTACACTGCATTTGC -3'

Posted On

2021-10-11