Mutagenetix > Incidental Mutation

Incidental Mutation 'R9034:Tnip2'

687213

Institutional Source

Beutler Lab

Gene Symbol

Tnip2

Ensembl Gene

ENSMUSG00000059866

Gene Name

TNFAIP3 interacting protein 2

Synonyms

ABIN-2, 1810020H16Rik

MMRRC Submission

068863-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.219) question?

Stock #

R9034 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

34653440-34671323 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 34671177 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Tyrosine at position 22 (C22Y)

Ref Sequence

ENSEMBL: ENSMUSP00000030991 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030991] [ENSMUST00000087737] [ENSMUST00000114359]

AlphaFold

Q99JG7

Predicted Effect

probably damaging
Transcript: ENSMUST00000030991
AA Change: C22Y

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000030991
Gene: ENSMUSG00000059866
AA Change: C22Y

Domain	Start	End	E-Value	Type
coiled coil region	30	123	N/A	INTRINSIC
Pfam:EABR	236	269	7.2e-21	PFAM
Pfam:CC2-LZ	264	364	5.5e-12	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000087737
AA Change: C22Y

PolyPhen 2 Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)

SMART Domains

Protein: ENSMUSP00000085030
Gene: ENSMUSG00000059866
AA Change: C22Y

Domain	Start	End	E-Value	Type
coiled coil region	30	123	N/A	INTRINSIC
Pfam:EABR	215	249	4.9e-23	PFAM
coiled coil region	256	341	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000114359
AA Change: C22Y

PolyPhen 2 Score 0.991 (Sensitivity: 0.71; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000109999
Gene: ENSMUSG00000059866
AA Change: C22Y

Domain	Start	End	E-Value	Type
coiled coil region	30	123	N/A	INTRINSIC
coiled coil region	225	258	N/A	INTRINSIC

Meta Mutation Damage Score

0.2451

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 97.9%

Validation Efficiency

95% (57/60)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which acts as an inhibitor of NFkappaB activation. The encoded protein is also involved in MAP/ERK signaling pathway in specific cell types. It may be involved in apoptosis of endothelial cells. Alternative splicing results in multiple transcript variants. A pseudogene related to this gene is located on the X chromosome.[provided by RefSeq, May 2014]
PHENOTYPE: Mice homozygous for a null allele have impaired IL-1 response and macrophage physiology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca9	T	C	11: 110,039,615 (GRCm39)	D466G	probably benign	Het
Acvr2a	T	C	2: 48,763,381 (GRCm39)	Y142H	probably damaging	Het
Agfg1	C	T	1: 82,853,913 (GRCm39)	Q188*	probably null	Het
Akap11	C	A	14: 78,748,299 (GRCm39)	V1363F		Het
Aldh3a1	A	G	11: 61,104,475 (GRCm39)	T121A	probably benign	Het
Arid1b	T	A	17: 5,387,180 (GRCm39)	D1491E	probably benign	Het
Baz2a	A	G	10: 127,952,268 (GRCm39)	T617A	probably damaging	Het
Cacna1c	T	C	6: 118,728,359 (GRCm39)	M362V		Het
Cant1	T	A	11: 118,302,128 (GRCm39)	H63L	probably benign	Het
Cdkn2aip	C	A	8: 48,164,243 (GRCm39)	C490F	probably damaging	Het
Cenpn	T	A	8: 117,661,478 (GRCm39)	D192E	probably benign	Het
Clint1	C	A	11: 45,799,782 (GRCm39)	L514M	probably benign	Het
Clint1	T	A	11: 45,799,783 (GRCm39)	L514Q	possibly damaging	Het
Cmklr1	G	C	5: 113,752,043 (GRCm39)	H319Q	probably benign	Het
Cspg5	T	C	9: 110,080,089 (GRCm39)	F419S	probably damaging	Het
Ehmt2	C	A	17: 35,122,417 (GRCm39)	A328E	probably benign	Het
Ercc6l2	T	C	13: 63,992,447 (GRCm39)	S299P	probably damaging	Het
F13b	T	C	1: 139,435,961 (GRCm39)	C256R	probably damaging	Het
F830016B08Rik	A	G	18: 60,433,141 (GRCm39)	T75A	probably damaging	Het
Fam227a	T	C	15: 79,532,952 (GRCm39)	M69V	probably benign	Het
Gm40460	GCAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAG	GCAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAGCAGGGCTTACAGCAGCTGGACTGGCAGCAG	7: 141,794,171 (GRCm39)		probably benign	Het
Grin2c	C	T	11: 115,142,065 (GRCm39)	E785K	probably damaging	Het
H2-M2	A	T	17: 37,792,176 (GRCm39)	S325T	probably benign	Het
Hmgcr	A	G	13: 96,795,885 (GRCm39)	S261P	probably damaging	Het
Impg1	T	A	9: 80,347,351 (GRCm39)		probably benign	Het
Irag2	T	C	6: 145,083,273 (GRCm39)	V4A	probably benign	Het
Krit1	A	G	5: 3,862,996 (GRCm39)		probably benign	Het
Krtap26-1	A	T	16: 88,444,161 (GRCm39)	N153K	probably benign	Het
Mfsd14b	G	T	13: 65,223,500 (GRCm39)	A178E	probably damaging	Het
Muc4	CAC	CACTAC	16: 32,575,367 (GRCm39)		probably benign	Het
Myh6	A	T	14: 55,185,596 (GRCm39)	I1531N	possibly damaging	Het
Myo7a	G	T	7: 97,728,465 (GRCm39)	A836D	probably benign	Het
Ncam1	A	T	9: 49,481,198 (GRCm39)	S19T	probably benign	Het
Nes	T	A	3: 87,885,735 (GRCm39)	D1331E	probably damaging	Het
Nsd2	G	A	5: 34,037,478 (GRCm39)	R700Q	possibly damaging	Het
Nxt1	A	T	2: 148,517,331 (GRCm39)	Y24F	possibly damaging	Het
Or14c39	G	A	7: 86,343,969 (GRCm39)	V102I	probably benign	Het
Or52n4	T	A	7: 104,293,835 (GRCm39)	H248L	probably damaging	Het
Or5g24-ps1	A	T	2: 85,464,144 (GRCm39)	T124S	probably benign	Het
Or6f2	G	A	7: 139,756,884 (GRCm39)	V284I	probably benign	Het
Or8b40	G	A	9: 38,027,550 (GRCm39)	V158M	possibly damaging	Het
Or8g50	G	A	9: 39,648,886 (GRCm39)	M258I	probably benign	Het
Or9g20	G	T	2: 85,630,302 (GRCm39)	A104E	possibly damaging	Het
Pex5l	T	A	3: 33,006,683 (GRCm39)	Q562L	probably damaging	Het
Plxna2	A	G	1: 194,476,197 (GRCm39)	Y1139C	probably damaging	Het
Prelp	T	C	1: 133,842,329 (GRCm39)	N272S	probably damaging	Het
Rtkn2	A	G	10: 67,841,416 (GRCm39)	K188R	probably damaging	Het
Sbno2	G	A	10: 79,898,591 (GRCm39)	R624W	probably damaging	Het
Scn8a	T	A	15: 100,927,642 (GRCm39)	C1374S	probably damaging	Het
Serpina1e	T	A	12: 103,917,361 (GRCm39)	T103S	probably benign	Het
Sh3tc2	A	G	18: 62,107,571 (GRCm39)	E194G	probably benign	Het
Slc36a3	A	T	11: 55,016,515 (GRCm39)	I360N	probably damaging	Het
Sphk1	T	C	11: 116,426,449 (GRCm39)	V135A	probably damaging	Het
Tnfsf10	G	A	3: 27,389,379 (GRCm39)	D147N	probably benign	Het
Trmt9b	C	T	8: 36,978,954 (GRCm39)	R186*	probably null	Het
Trp73	T	C	4: 154,152,088 (GRCm39)	T187A	probably benign	Het
Tspan33	C	T	6: 29,717,611 (GRCm39)	Q276*	probably null	Het
Ttn	C	T	2: 76,542,871 (GRCm39)	G33372R	probably damaging	Het
Vmn2r31	T	A	7: 7,397,680 (GRCm39)	T193S	probably benign	Het
Vps54	T	C	11: 21,213,273 (GRCm39)	F19L	probably benign	Het
Vwa8	A	G	14: 79,296,179 (GRCm39)	T856A	probably damaging	Het
Zscan4b	A	T	7: 10,634,840 (GRCm39)	Y468N	probably benign	Het

Other mutations in Tnip2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00754:Tnip2	APN	5	34,656,643 (GRCm39)	missense	probably benign	0.29
IGL01980:Tnip2	APN	5	34,654,212 (GRCm39)	missense	probably benign	0.17
IGL02649:Tnip2	APN	5	34,671,075 (GRCm39)	missense	probably damaging	1.00
IGL03122:Tnip2	APN	5	34,661,095 (GRCm39)	missense	possibly damaging	0.94
PIT4445001:Tnip2	UTSW	5	34,654,215 (GRCm39)	missense	probably benign	0.41
R1713:Tnip2	UTSW	5	34,661,175 (GRCm39)	splice site	probably benign
R1782:Tnip2	UTSW	5	34,657,012 (GRCm39)	missense	probably benign	0.21
R2183:Tnip2	UTSW	5	34,656,957 (GRCm39)	intron	probably benign
R2184:Tnip2	UTSW	5	34,656,957 (GRCm39)	intron	probably benign
R4417:Tnip2	UTSW	5	34,660,925 (GRCm39)	nonsense	probably null
R5216:Tnip2	UTSW	5	34,661,149 (GRCm39)	missense	probably damaging	0.99
R5254:Tnip2	UTSW	5	34,660,922 (GRCm39)	missense	probably damaging	0.99
R5287:Tnip2	UTSW	5	34,671,108 (GRCm39)	missense	probably damaging	1.00
R5403:Tnip2	UTSW	5	34,671,108 (GRCm39)	missense	probably damaging	1.00
R5839:Tnip2	UTSW	5	34,653,976 (GRCm39)	utr 3 prime	probably benign
R6355:Tnip2	UTSW	5	34,656,541 (GRCm39)	nonsense	probably null
R6379:Tnip2	UTSW	5	34,660,979 (GRCm39)	missense	probably damaging	1.00
R7389:Tnip2	UTSW	5	34,671,145 (GRCm39)	missense	probably benign	0.04
R8224:Tnip2	UTSW	5	34,671,003 (GRCm39)	missense	possibly damaging	0.46
R9722:Tnip2	UTSW	5	34,654,212 (GRCm39)	missense	probably benign	0.17

Predicted Primers

PCR Primer
(F):5'- TCACTCGCTCCAACAAGTTC -3'
(R):5'- CCTAGAATGGAGCTGGTGTG -3'

Sequencing Primer
(F):5'- ACAAGTTCCCCAGGCCG -3'
(R):5'- CTAGAATGGAGCTGGTGTGTCAAG -3'

Posted On

2021-11-19