Incidental Mutation 'R9490:Edil3'
| ID |
716902 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Edil3
|
| Ensembl Gene |
ENSMUSG00000034488 |
| Gene Name |
EGF-like repeats and discoidin I-like domains 3 |
| Synonyms |
Del-1, Del1, developmental endothelial locus-1 |
| MMRRC Submission |
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R9490 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Not validated
|
| Chromosome |
13 |
| Chromosomal Location |
88969591-89471342 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 89347591 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Cysteine to Tyrosine
at position 382
(C382Y)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000112829
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000043111]
[ENSMUST00000081769]
[ENSMUST00000118731]
|
| AlphaFold |
O35474 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000043111
|
| SMART Domains |
Protein: ENSMUSP00000044652
Gene: ENSMUSG00000034488
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
23 |
N/A |
INTRINSIC |
|
EGF
|
25 |
60 |
2.03e-6 |
SMART |
|
EGF
|
67 |
107 |
1.62e-5 |
SMART |
|
EGF_CA
|
109 |
145 |
4.32e-10 |
SMART |
|
FA58C
|
147 |
304 |
3.7e-58 |
SMART |
|
FA58C
|
308 |
466 |
1.44e-37 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000081769
|
| SMART Domains |
Protein: ENSMUSP00000080462
Gene: ENSMUSG00000034488
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
23 |
N/A |
INTRINSIC |
|
EGF
|
25 |
60 |
2.03e-6 |
SMART |
|
EGF
|
77 |
117 |
1.62e-5 |
SMART |
|
EGF_CA
|
119 |
155 |
4.32e-10 |
SMART |
|
FA58C
|
157 |
314 |
3.7e-58 |
SMART |
|
FA58C
|
318 |
476 |
1.44e-37 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000118731
AA Change: C382Y
PolyPhen 2
Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
|
| SMART Domains |
Protein: ENSMUSP00000112829
Gene: ENSMUSG00000034488
AA Change: C382Y
| Domain | Start | End | E-Value | Type |
|---|
|
signal peptide
|
1 |
23 |
N/A |
INTRINSIC |
|
EGF
|
25 |
60 |
2.03e-6 |
SMART |
|
EGF
|
77 |
117 |
1.62e-5 |
SMART |
|
EGF_CA
|
119 |
155 |
4.32e-10 |
SMART |
|
FA58C
|
157 |
314 |
3.7e-58 |
SMART |
|
SCOP:d1d7pm_
|
316 |
380 |
4e-20 |
SMART |
|
Blast:FA58C
|
319 |
380 |
2e-9 |
BLAST |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.6%
- 20x: 98.9%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an integrin ligand. It plays an important role in mediating angiogenesis and may be important in vessel wall remodeling and development. It also influences endothelial cell behavior. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null mutation are viable and fertile with no noticeable fur phenotype. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 37 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca7 |
A |
G |
10: 79,834,601 (GRCm39) |
D167G |
probably benign |
Het |
| Arhgef37 |
G |
T |
18: 61,641,907 (GRCm39) |
P154Q |
probably damaging |
Het |
| Chsy3 |
A |
T |
18: 59,312,486 (GRCm39) |
S320C |
probably damaging |
Het |
| Col1a2 |
C |
A |
6: 4,505,901 (GRCm39) |
T21K |
unknown |
Het |
| Ctcfl |
A |
T |
2: 172,960,548 (GRCm39) |
Y12N |
probably benign |
Het |
| Cyria |
A |
G |
12: 12,390,727 (GRCm39) |
E13G |
probably benign |
Het |
| Disp1 |
A |
G |
1: 182,871,092 (GRCm39) |
Y443H |
probably benign |
Het |
| Dock2 |
T |
A |
11: 34,589,582 (GRCm39) |
T492S |
possibly damaging |
Het |
| Fancd2 |
A |
G |
6: 113,555,416 (GRCm39) |
K1142E |
probably damaging |
Het |
| Fibcd1 |
T |
A |
2: 31,723,815 (GRCm39) |
T275S |
possibly damaging |
Het |
| Fstl5 |
T |
C |
3: 76,615,060 (GRCm39) |
V707A |
possibly damaging |
Het |
| Gm7298 |
G |
A |
6: 121,751,083 (GRCm39) |
R720H |
probably benign |
Het |
| Hivep1 |
A |
T |
13: 42,311,518 (GRCm39) |
T1253S |
probably damaging |
Het |
| Kif15 |
A |
G |
9: 122,788,203 (GRCm39) |
N14S |
probably benign |
Het |
| Ldhc |
G |
A |
7: 46,519,184 (GRCm39) |
V136I |
probably damaging |
Het |
| Madd |
T |
C |
2: 91,008,501 (GRCm39) |
S134G |
probably benign |
Het |
| Map3k5 |
T |
C |
10: 20,007,797 (GRCm39) |
S1209P |
probably benign |
Het |
| Mapre2 |
A |
G |
18: 23,986,764 (GRCm39) |
K101E |
possibly damaging |
Het |
| Muc16 |
T |
A |
9: 18,568,149 (GRCm39) |
R1457* |
probably null |
Het |
| Muc5b |
T |
C |
7: 141,425,497 (GRCm39) |
V4714A |
probably benign |
Het |
| Pcdhgb5 |
T |
C |
18: 37,865,240 (GRCm39) |
V345A |
probably benign |
Het |
| Phkb |
T |
C |
8: 86,628,525 (GRCm39) |
F170S |
probably damaging |
Het |
| Pip5kl1 |
C |
T |
2: 32,466,667 (GRCm39) |
P12L |
probably benign |
Het |
| Pramel14 |
T |
A |
4: 143,719,606 (GRCm39) |
N253I |
probably benign |
Het |
| Prmt2 |
G |
A |
10: 76,053,227 (GRCm39) |
P263S |
probably damaging |
Het |
| Rab44 |
C |
T |
17: 29,354,065 (GRCm39) |
|
probably benign |
Het |
| Rad9a |
C |
T |
19: 4,247,547 (GRCm39) |
G200R |
probably damaging |
Het |
| Ralgapb |
A |
G |
2: 158,334,350 (GRCm39) |
T1354A |
probably benign |
Het |
| Rere |
A |
G |
4: 150,516,040 (GRCm39) |
D111G |
probably benign |
Het |
| Rnase2b |
A |
T |
14: 51,400,284 (GRCm39) |
T122S |
probably benign |
Het |
| Slc14a1 |
C |
A |
18: 78,152,807 (GRCm39) |
A367S |
probably damaging |
Het |
| Slc26a2 |
C |
G |
18: 61,331,881 (GRCm39) |
V517L |
probably benign |
Het |
| Spock2 |
A |
G |
10: 59,961,641 (GRCm39) |
K195R |
probably benign |
Het |
| Tgm7 |
T |
A |
2: 120,928,867 (GRCm39) |
D343V |
probably damaging |
Het |
| Tmf1 |
T |
C |
6: 97,137,227 (GRCm39) |
T910A |
probably benign |
Het |
| Ttc3 |
T |
C |
16: 94,245,360 (GRCm39) |
V1457A |
probably benign |
Het |
| Wdfy3 |
A |
G |
5: 102,078,716 (GRCm39) |
V862A |
probably benign |
Het |
|
| Other mutations in Edil3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00900:Edil3
|
APN |
13 |
89,437,652 (GRCm39) |
missense |
probably benign |
0.40 |
|
IGL01628:Edil3
|
APN |
13 |
89,467,945 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL02112:Edil3
|
APN |
13 |
89,328,374 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03123:Edil3
|
APN |
13 |
89,279,855 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0402:Edil3
|
UTSW |
13 |
89,347,570 (GRCm39) |
splice site |
probably benign |
|
|
R0608:Edil3
|
UTSW |
13 |
89,332,968 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0675:Edil3
|
UTSW |
13 |
89,325,399 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0735:Edil3
|
UTSW |
13 |
89,325,297 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R0991:Edil3
|
UTSW |
13 |
89,437,625 (GRCm39) |
nonsense |
probably null |
|
|
R1507:Edil3
|
UTSW |
13 |
89,279,831 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1643:Edil3
|
UTSW |
13 |
89,437,695 (GRCm39) |
critical splice donor site |
probably null |
|
|
R2008:Edil3
|
UTSW |
13 |
89,093,072 (GRCm39) |
splice site |
probably null |
|
|
R3703:Edil3
|
UTSW |
13 |
89,325,417 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4206:Edil3
|
UTSW |
13 |
89,328,397 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4258:Edil3
|
UTSW |
13 |
89,325,272 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4570:Edil3
|
UTSW |
13 |
89,280,016 (GRCm39) |
intron |
probably benign |
|
|
R4575:Edil3
|
UTSW |
13 |
89,467,850 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4576:Edil3
|
UTSW |
13 |
89,467,850 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4654:Edil3
|
UTSW |
13 |
89,437,589 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5420:Edil3
|
UTSW |
13 |
89,279,891 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5446:Edil3
|
UTSW |
13 |
89,332,957 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R5534:Edil3
|
UTSW |
13 |
89,347,593 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5653:Edil3
|
UTSW |
13 |
89,279,931 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5663:Edil3
|
UTSW |
13 |
89,190,627 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5664:Edil3
|
UTSW |
13 |
89,467,832 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6179:Edil3
|
UTSW |
13 |
88,970,108 (GRCm39) |
missense |
probably benign |
|
|
R6254:Edil3
|
UTSW |
13 |
89,467,848 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6813:Edil3
|
UTSW |
13 |
89,437,575 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7138:Edil3
|
UTSW |
13 |
89,279,847 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7215:Edil3
|
UTSW |
13 |
88,970,169 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7295:Edil3
|
UTSW |
13 |
89,279,902 (GRCm39) |
nonsense |
probably null |
|
|
Z1176:Edil3
|
UTSW |
13 |
89,092,989 (GRCm39) |
missense |
probably benign |
0.19 |
|
Z1177:Edil3
|
UTSW |
13 |
88,970,131 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- TAACCACCTACTGGGGCTTC -3'
(R):5'- GTTTCATTCAGCTAGAAGACTCAG -3'
Sequencing Primer
(F):5'- CACCTTAGAGTTTTAATCTCCAAGG -3'
(R):5'- TCAGATGAAGGCAGCCTTTAAC -3'
|
| Posted On |
2022-07-18 |
Incidental Mutation