Incidental Mutation 'IGL01474:Syncrip'
| ID |
88397 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Syncrip
|
| Ensembl Gene |
ENSMUSG00000032423 |
| Gene Name |
synaptotagmin binding, cytoplasmic RNA interacting protein |
| Synonyms |
2610109K23Rik, Nsap1, pp68, RRM RNA binding protein GRY-RBP, GRY-RBP, 4632417O19Rik, hnRNP Q, Nsap1l |
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.696)
|
| Stock # |
IGL01474
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
9 |
| Chromosomal Location |
88331417-88364645 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 88362800 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 3
(T3A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000133649
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000069221]
[ENSMUST00000172508]
[ENSMUST00000172828]
[ENSMUST00000173405]
[ENSMUST00000173801]
[ENSMUST00000174269]
[ENSMUST00000174282]
[ENSMUST00000174688]
[ENSMUST00000174361]
[ENSMUST00000174391]
|
| AlphaFold |
Q7TMK9 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000069221
AA Change: T3A
PolyPhen 2
Score 0.036 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000063744
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
163 |
237 |
3.38e-21 |
SMART |
|
RRM
|
244 |
321 |
2.1e-8 |
SMART |
|
RRM
|
339 |
404 |
1.4e-18 |
SMART |
|
low complexity region
|
428 |
490 |
N/A |
INTRINSIC |
|
low complexity region
|
494 |
522 |
N/A |
INTRINSIC |
|
low complexity region
|
526 |
553 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000172508
AA Change: T3A
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000172828
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000173405
AA Change: T3A
PolyPhen 2
Score 0.036 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000133343
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1l3ka1
|
156 |
196 |
5e-8 |
SMART |
|
Blast:RRM
|
163 |
196 |
5e-17 |
BLAST |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000173801
AA Change: T3A
PolyPhen 2
Score 0.036 (Sensitivity: 0.94; Specificity: 0.82)
|
| SMART Domains |
Protein: ENSMUSP00000133649
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
163 |
237 |
3.38e-21 |
SMART |
|
RRM
|
244 |
321 |
2.1e-8 |
SMART |
|
RRM
|
339 |
404 |
1.4e-18 |
SMART |
|
low complexity region
|
428 |
490 |
N/A |
INTRINSIC |
|
low complexity region
|
494 |
522 |
N/A |
INTRINSIC |
|
low complexity region
|
526 |
563 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000174145
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174269
AA Change: T3A
PolyPhen 2
Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
|
| SMART Domains |
Protein: ENSMUSP00000134506
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
163 |
237 |
3.38e-21 |
SMART |
|
RRM
|
244 |
303 |
2.77e0 |
SMART |
|
RRM
|
304 |
369 |
1.4e-18 |
SMART |
|
low complexity region
|
393 |
455 |
N/A |
INTRINSIC |
|
low complexity region
|
459 |
487 |
N/A |
INTRINSIC |
|
low complexity region
|
491 |
518 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174282
AA Change: T3A
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
| SMART Domains |
Protein: ENSMUSP00000134071
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
163 |
237 |
1.4e-23 |
SMART |
|
RRM
|
244 |
321 |
9.1e-11 |
SMART |
|
RRM
|
339 |
404 |
6e-21 |
SMART |
|
low complexity region
|
428 |
490 |
N/A |
INTRINSIC |
|
low complexity region
|
494 |
522 |
N/A |
INTRINSIC |
|
low complexity region
|
526 |
552 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174688
AA Change: T3A
PolyPhen 2
Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)
|
| SMART Domains |
Protein: ENSMUSP00000133716
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
163 |
224 |
3.18e-8 |
SMART |
|
RRM
|
225 |
290 |
1.4e-18 |
SMART |
|
low complexity region
|
314 |
376 |
N/A |
INTRINSIC |
|
low complexity region
|
380 |
408 |
N/A |
INTRINSIC |
|
low complexity region
|
412 |
439 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174361
AA Change: T3A
PolyPhen 2
Score 0.013 (Sensitivity: 0.96; Specificity: 0.78)
|
| SMART Domains |
Protein: ENSMUSP00000134722
Gene: ENSMUSG00000032423
AA Change: T3A
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
163 |
237 |
3.38e-21 |
SMART |
|
RRM
|
244 |
303 |
2.77e0 |
SMART |
|
RRM
|
304 |
369 |
1.4e-18 |
SMART |
|
low complexity region
|
393 |
455 |
N/A |
INTRINSIC |
|
low complexity region
|
459 |
487 |
N/A |
INTRINSIC |
|
low complexity region
|
491 |
528 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000187770
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174391
|
| SMART Domains |
Protein: ENSMUSP00000134342
Gene: ENSMUSG00000032423
| Domain | Start | End | E-Value | Type |
|---|
|
RRM
|
65 |
139 |
3.38e-21 |
SMART |
|
RRM
|
146 |
223 |
2.1e-8 |
SMART |
|
RRM
|
241 |
306 |
1.4e-18 |
SMART |
|
low complexity region
|
330 |
392 |
N/A |
INTRINSIC |
|
low complexity region
|
396 |
424 |
N/A |
INTRINSIC |
|
low complexity region
|
428 |
455 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family. hnRNPs are RNA binding proteins that complex with heterogeneous nuclear RNA (hnRNA) and regulate alternative splicing, polyadenylation, and other aspects of mRNA metabolism and transport. The encoded protein plays a role in multiple aspects of mRNA maturation and is associated with several multiprotein complexes including the apoB RNA editing-complex and survival of motor neurons (SMN) complex. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 20. [provided by RefSeq, Dec 2011]
|
| Allele List at MGI |
All alleles(28) : Gene trapped(28) |
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Acot12 |
A |
T |
13: 91,920,902 (GRCm39) |
K336I |
possibly damaging |
Het |
| Acsbg2 |
A |
G |
17: 57,168,621 (GRCm39) |
I166T |
possibly damaging |
Het |
| Adrm1b |
G |
T |
3: 92,335,650 (GRCm39) |
Q351K |
probably damaging |
Het |
| Bpifc |
T |
A |
10: 85,836,503 (GRCm39) |
M1L |
probably damaging |
Het |
| Ccnb2 |
T |
A |
9: 70,326,305 (GRCm39) |
N44I |
probably benign |
Het |
| Cdc73 |
C |
T |
1: 143,547,070 (GRCm39) |
V276M |
probably benign |
Het |
| Cnot7 |
A |
G |
8: 40,960,490 (GRCm39) |
|
probably null |
Het |
| Col11a1 |
T |
A |
3: 114,010,783 (GRCm39) |
|
probably benign |
Het |
| Coro1c |
T |
C |
5: 114,020,216 (GRCm39) |
|
probably benign |
Het |
| Crocc |
A |
G |
4: 140,762,703 (GRCm39) |
|
probably benign |
Het |
| Dync2h1 |
A |
T |
9: 7,102,493 (GRCm39) |
Y396N |
probably benign |
Het |
| Gm2888 |
T |
A |
14: 3,032,041 (GRCm38) |
D116E |
probably damaging |
Het |
| Gm29326 |
A |
T |
7: 29,262,014 (GRCm39) |
|
noncoding transcript |
Het |
| Greb1 |
A |
G |
12: 16,734,502 (GRCm39) |
V1496A |
probably benign |
Het |
| H2bc18 |
A |
G |
3: 96,177,125 (GRCm39) |
|
probably benign |
Het |
| Hdac7 |
A |
G |
15: 97,695,820 (GRCm39) |
|
probably null |
Het |
| Hectd4 |
A |
G |
5: 121,474,712 (GRCm39) |
T2778A |
possibly damaging |
Het |
| Hivep2 |
A |
T |
10: 14,019,406 (GRCm39) |
H2059L |
probably damaging |
Het |
| Ift88 |
A |
T |
14: 57,715,531 (GRCm39) |
I525F |
probably benign |
Het |
| Irag1 |
A |
T |
7: 110,470,640 (GRCm39) |
S898T |
possibly damaging |
Het |
| Itga5 |
G |
A |
15: 103,262,697 (GRCm39) |
Q324* |
probably null |
Het |
| Klhl14 |
T |
G |
18: 21,690,911 (GRCm39) |
H513P |
probably damaging |
Het |
| Lama5 |
A |
T |
2: 179,838,363 (GRCm39) |
D837E |
probably damaging |
Het |
| Muc6 |
C |
A |
7: 141,237,572 (GRCm39) |
C215F |
probably damaging |
Het |
| Myh15 |
A |
G |
16: 48,952,461 (GRCm39) |
K844E |
probably damaging |
Het |
| Neb |
A |
G |
2: 52,218,917 (GRCm39) |
V31A |
unknown |
Het |
| Nipbl |
A |
G |
15: 8,340,693 (GRCm39) |
I2009T |
possibly damaging |
Het |
| Or2ag18 |
A |
G |
7: 106,405,147 (GRCm39) |
I174T |
probably benign |
Het |
| Piwil2 |
T |
C |
14: 70,635,667 (GRCm39) |
R536G |
probably benign |
Het |
| Pld3 |
A |
G |
7: 27,232,044 (GRCm39) |
V412A |
probably damaging |
Het |
| Prkaa2 |
A |
C |
4: 104,906,529 (GRCm39) |
|
probably null |
Het |
| Rdh9 |
T |
C |
10: 127,626,814 (GRCm39) |
L289P |
probably damaging |
Het |
| Rusc2 |
C |
T |
4: 43,416,434 (GRCm39) |
S580L |
probably damaging |
Het |
| Sidt2 |
A |
G |
9: 45,858,280 (GRCm39) |
|
probably null |
Het |
| Slc18b1 |
A |
T |
10: 23,679,748 (GRCm39) |
K92N |
probably benign |
Het |
| Slc20a2 |
G |
A |
8: 23,025,573 (GRCm39) |
V92M |
possibly damaging |
Het |
| Slc4a11 |
A |
T |
2: 130,527,464 (GRCm39) |
F644I |
probably damaging |
Het |
| Spata31d1d |
A |
T |
13: 59,878,029 (GRCm39) |
|
probably benign |
Het |
| Spef2 |
T |
C |
15: 9,663,244 (GRCm39) |
M846V |
probably benign |
Het |
|
| Other mutations in Syncrip |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01287:Syncrip
|
APN |
9 |
88,338,660 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL02657:Syncrip
|
APN |
9 |
88,338,457 (GRCm39) |
missense |
probably benign |
0.23 |
|
IGL02659:Syncrip
|
APN |
9 |
88,338,457 (GRCm39) |
missense |
probably benign |
0.23 |
|
IGL02660:Syncrip
|
APN |
9 |
88,338,457 (GRCm39) |
missense |
probably benign |
0.23 |
|
IGL02699:Syncrip
|
APN |
9 |
88,338,607 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL02727:Syncrip
|
APN |
9 |
88,361,932 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02801:Syncrip
|
APN |
9 |
88,361,862 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03169:Syncrip
|
APN |
9 |
88,338,496 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL03214:Syncrip
|
APN |
9 |
88,346,696 (GRCm39) |
intron |
probably benign |
|
|
3-1:Syncrip
|
UTSW |
9 |
88,343,727 (GRCm39) |
nonsense |
probably null |
|
|
R0426:Syncrip
|
UTSW |
9 |
88,338,312 (GRCm39) |
intron |
probably benign |
|
|
R1500:Syncrip
|
UTSW |
9 |
88,361,949 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1952:Syncrip
|
UTSW |
9 |
88,358,927 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2437:Syncrip
|
UTSW |
9 |
88,361,620 (GRCm39) |
splice site |
probably benign |
|
|
R3715:Syncrip
|
UTSW |
9 |
88,361,738 (GRCm39) |
splice site |
probably benign |
|
|
R3779:Syncrip
|
UTSW |
9 |
88,358,992 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4770:Syncrip
|
UTSW |
9 |
88,361,905 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5677:Syncrip
|
UTSW |
9 |
88,338,762 (GRCm39) |
unclassified |
probably benign |
|
|
R6860:Syncrip
|
UTSW |
9 |
88,358,849 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7286:Syncrip
|
UTSW |
9 |
88,346,716 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7736:Syncrip
|
UTSW |
9 |
88,343,721 (GRCm39) |
critical splice donor site |
probably null |
|
|
R8778:Syncrip
|
UTSW |
9 |
88,338,294 (GRCm39) |
missense |
unknown |
|
|
R8937:Syncrip
|
UTSW |
9 |
88,344,900 (GRCm39) |
intron |
probably benign |
|
|
R9684:Syncrip
|
UTSW |
9 |
88,361,671 (GRCm39) |
missense |
probably benign |
0.02 |
|
| Posted On |
2013-11-18 |
Incidental Mutation