Incidental Mutation 'R1548:Spata6'
ID172314
Institutional Source Beutler Lab
Gene Symbol Spata6
Ensembl Gene ENSMUSG00000034401
Gene Namespermatogenesis associated 6
Synonyms1700062C23Rik, Hash, KRP
MMRRC Submission 039587-MU
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #R1548 (G1)
Quality Score225
Status Validated
Chromosome4
Chromosomal Location111719984-111829184 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 111779006 bp
ZygosityHeterozygous
Amino Acid Change Phenylalanine to Leucine at position 165 (F165L)
Ref Sequence ENSEMBL: ENSMUSP00000036964 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038868] [ENSMUST00000084354] [ENSMUST00000153746]
Predicted Effect probably benign
Transcript: ENSMUST00000038868
AA Change: F165L

PolyPhen 2 Score 0.177 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000036964
Gene: ENSMUSG00000034401
AA Change: F165L

DomainStartEndE-ValueType
Pfam:SPATA6 11 149 3.4e-56 PFAM
low complexity region 182 198 N/A INTRINSIC
low complexity region 397 413 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000084354
AA Change: F165L

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000081383
Gene: ENSMUSG00000034401
AA Change: F165L

DomainStartEndE-ValueType
Pfam:SPATA6 10 149 1.9e-57 PFAM
low complexity region 182 198 N/A INTRINSIC
low complexity region 377 394 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000122820
Predicted Effect noncoding transcript
Transcript: ENSMUST00000123718
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125999
Predicted Effect noncoding transcript
Transcript: ENSMUST00000134000
Predicted Effect noncoding transcript
Transcript: ENSMUST00000143879
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149834
Predicted Effect probably benign
Transcript: ENSMUST00000153746
SMART Domains Protein: ENSMUSP00000114610
Gene: ENSMUSG00000034401

DomainStartEndE-ValueType
Pfam:SPATA6 10 149 3e-58 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000156179
Meta Mutation Damage Score 0.178 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 95.9%
  • 20x: 91.3%
Validation Efficiency 99% (69/70)
MGI Phenotype PHENOTYPE: Mice homozygous for a null allele exhibit abnormal formation of the sperm connecting piece during late spermiogenesis, leading to acephalic spermatozoa and male infertility. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 65 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2610203C20Rik T C 9: 41,581,376 L116P probably damaging Het
A830018L16Rik A T 1: 11,518,594 R78S probably damaging Het
Acad10 G T 5: 121,626,040 probably benign Het
Acad10 G C 5: 121,626,041 probably benign Het
Ang2 C A 14: 51,195,533 E131* probably null Het
Ankfn1 T C 11: 89,526,541 N82D probably damaging Het
Anks1b T C 10: 90,049,985 I181T possibly damaging Het
Bcl2l12 C G 7: 44,992,818 G215R probably damaging Het
Bnc2 A G 4: 84,275,957 Y1044H probably damaging Het
Cacna1s T C 1: 136,110,937 F1172S probably damaging Het
Cct8 A G 16: 87,485,584 I482T probably damaging Het
Cfap74 C T 4: 155,434,045 T580I probably benign Het
Cib1 A T 7: 80,228,414 Y105* probably null Het
Cpa1 G A 6: 30,642,335 G245D probably damaging Het
Csmd3 A G 15: 47,981,975 V801A possibly damaging Het
Ddx10 T C 9: 53,149,561 probably null Het
Ddx4 T C 13: 112,599,997 N613S probably damaging Het
Drd3 A G 16: 43,821,341 D340G probably benign Het
E2f4 A G 8: 105,304,688 *411W probably null Het
Fmnl2 A G 2: 53,105,537 E424G probably damaging Het
Foxp1 A T 6: 98,945,420 I450N probably damaging Het
Gm10229 G A 16: 89,015,389 probably benign Het
Gm5771 G T 6: 41,396,011 L72F probably damaging Het
Gm813 A T 16: 58,615,839 D40E probably benign Het
Gpr19 A G 6: 134,870,084 F175S possibly damaging Het
Gpr21 C T 2: 37,518,072 T210M probably damaging Het
Grhl2 C T 15: 37,336,323 A488V probably benign Het
Hif3a T C 7: 17,044,403 T435A probably benign Het
Hoxb4 C T 11: 96,318,899 R44* probably null Het
Ifi47 A G 11: 49,095,871 D155G probably damaging Het
Igdcc4 T C 9: 65,135,227 L142P probably benign Het
Ints6 G A 14: 62,713,692 P296L probably damaging Het
Itga3 A G 11: 95,046,919 probably null Het
Klra3 G C 6: 130,333,144 R138G probably benign Het
Lgals12 A T 19: 7,604,312 H50Q probably benign Het
Lrp12 A G 15: 39,872,506 S696P probably damaging Het
Lrp6 G A 6: 134,459,429 T1258I possibly damaging Het
Meis2 C T 2: 116,058,702 D190N probably damaging Het
Mon2 C T 10: 123,036,007 probably benign Het
Muc6 G T 7: 141,638,772 T1996N possibly damaging Het
Muc6 A G 7: 141,652,103 probably benign Het
Myo15 A G 11: 60,488,238 H1394R probably damaging Het
Myo5a A T 9: 75,171,746 I929F probably damaging Het
Nek6 T A 2: 38,568,895 Y141N probably damaging Het
Notch4 T A 17: 34,568,422 C319S probably damaging Het
Nwd2 A T 5: 63,800,182 D285V probably benign Het
Olfml1 T C 7: 107,590,375 S216P possibly damaging Het
Pabpc1l G T 2: 164,037,171 V313F possibly damaging Het
Pfkfb2 G T 1: 130,698,083 H453Q probably benign Het
Pigt C T 2: 164,501,519 T305I probably benign Het
Plxnb1 C T 9: 109,100,900 L275F possibly damaging Het
Ppm1d C T 11: 85,339,605 R350C probably damaging Het
Rassf1 C A 9: 107,551,846 P84T probably benign Het
Rgl3 G T 9: 21,980,706 R361S probably benign Het
Rnf213 G A 11: 119,442,707 R2914H probably damaging Het
Ryr2 A T 13: 11,554,549 C4956* probably null Het
Scaper C T 9: 55,816,670 R668H probably damaging Het
Tcirg1 A T 19: 3,896,845 W694R probably benign Het
Tmem245 A T 4: 56,906,233 Y160* probably null Het
Tshr T C 12: 91,534,031 Y279H probably damaging Het
Ttf1 A C 2: 29,065,138 K171N probably damaging Het
Ubap2 C T 4: 41,199,872 A752T probably benign Het
Ugcg C T 4: 59,207,798 P46S probably benign Het
Xdh A G 17: 73,913,901 V611A probably damaging Het
Zfp142 G T 1: 74,570,104 H1408N probably damaging Het
Other mutations in Spata6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00944:Spata6 APN 4 111805928 splice site probably benign
IGL02110:Spata6 APN 4 111784806 missense possibly damaging 0.53
IGL03181:Spata6 APN 4 111822766 missense probably benign 0.11
PIT4378001:Spata6 UTSW 4 111746181 missense possibly damaging 0.71
R0043:Spata6 UTSW 4 111780805 missense probably damaging 0.98
R1199:Spata6 UTSW 4 111799145 missense possibly damaging 0.53
R1491:Spata6 UTSW 4 111746191 missense probably damaging 0.99
R1582:Spata6 UTSW 4 111780795 nonsense probably null
R1582:Spata6 UTSW 4 111780797 missense probably benign 0.00
R4690:Spata6 UTSW 4 111774826 missense probably damaging 1.00
R5123:Spata6 UTSW 4 111768795 missense possibly damaging 0.71
R5360:Spata6 UTSW 4 111822829 missense possibly damaging 0.96
R5373:Spata6 UTSW 4 111822834 critical splice donor site probably null
R5396:Spata6 UTSW 4 111799118 missense probably damaging 1.00
R5919:Spata6 UTSW 4 111779208 missense probably damaging 0.96
R6017:Spata6 UTSW 4 111774827 missense probably damaging 1.00
R6476:Spata6 UTSW 4 111774823 missense probably damaging 1.00
R6573:Spata6 UTSW 4 111779279 missense probably damaging 1.00
R6807:Spata6 UTSW 4 111784815 missense probably benign 0.01
R7341:Spata6 UTSW 4 111768738 nonsense probably null
R7406:Spata6 UTSW 4 111780820 missense possibly damaging 0.70
X0066:Spata6 UTSW 4 111828304 missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- CCCAGGAGCAAACTGCCTTATCATC -3'
(R):5'- TCGGAAAGCTCACACATCCGTC -3'

Sequencing Primer
(F):5'- CTTATCATCCTAGCCAGGATCAG -3'
(R):5'- AAAGCTCACACATCCGTCTTTTTG -3'
Posted On2014-04-13