Incidental Mutation 'R6272:Hmgcll1'
ID507405
Institutional Source Beutler Lab
Gene Symbol Hmgcll1
Ensembl Gene ENSMUSG00000007908
Gene Name3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1
Synonyms
MMRRC Submission
Accession Numbers

Ncbi RefSeq: NM_173731; MGI: 2446108

Is this an essential gene? Probably non essential (E-score: 0.158) question?
Stock #R6272 (G1)
Quality Score225.009
Status Validated
Chromosome9
Chromosomal Location76014855-76136350 bp(+) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) G to A at 76130345 bp
ZygosityHeterozygous
Amino Acid Change Glycine to Arginine at position 174 (G174R)
Ref Sequence ENSEMBL: ENSMUSP00000138914 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000008052] [ENSMUST00000117981] [ENSMUST00000183425] [ENSMUST00000183979]
Predicted Effect probably damaging
Transcript: ENSMUST00000008052
AA Change: G277R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000008052
Gene: ENSMUSG00000007908
AA Change: G277R

DomainStartEndE-ValueType
Pfam:HMGL-like 47 321 2.2e-67 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000117981
AA Change: G245R

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000114045
Gene: ENSMUSG00000007908
AA Change: G245R

DomainStartEndE-ValueType
Pfam:HMGL-like 56 104 1e-10 PFAM
Pfam:HMGL-like 99 183 2e-8 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000183425
AA Change: G111R

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000139094
Gene: ENSMUSG00000007908
AA Change: G111R

DomainStartEndE-ValueType
Pfam:HMGL-like 56 101 8.5e-11 PFAM
Predicted Effect probably damaging
Transcript: ENSMUST00000183979
AA Change: G174R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000138914
Gene: ENSMUSG00000007908
AA Change: G174R

DomainStartEndE-ValueType
Pfam:HMGL-like 56 104 6.4e-11 PFAM
Pfam:HMGL-like 98 201 1.6e-32 PFAM
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 95.3%
Validation Efficiency 98% (55/56)
Allele List at MGI

All alleles(6) : Targeted(2) Gene trapped(4)

Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adgra3 A T 5: 50,009,449 M187K possibly damaging Het
Adgrg3 A G 8: 95,036,261 I189V noncoding transcript Het
Ampd1 A G 3: 103,085,383 K147R possibly damaging Het
Apbb2 T C 5: 66,311,072 T561A probably damaging Het
Arfgef3 A T 10: 18,646,963 D438E probably benign Het
Atxn1 T A 13: 45,567,762 Q219L possibly damaging Het
AW551984 A T 9: 39,598,037 D269E probably benign Het
Cryab A G 9: 50,754,525 K72R possibly damaging Het
Dbn1 G A 13: 55,475,104 A522V probably benign Het
Dip2a A T 10: 76,286,407 *158R probably null Het
Edrf1 C T 7: 133,637,808 probably benign Het
Ern2 A T 7: 122,176,646 D408E probably benign Het
F830016B08Rik T C 18: 60,300,078 S78P probably damaging Het
Fah C A 7: 84,595,545 G137C probably damaging Het
Fam208b C T 13: 3,581,891 R870H possibly damaging Het
Foxd3 A G 4: 99,656,740 D39G probably damaging Het
Gm3854 C T 7: 6,353,845 P219L probably damaging Het
Gprin3 G A 6: 59,353,331 Q664* probably null Het
H2-Ob T C 17: 34,242,644 I119T probably benign Het
Hist1h3e A T 13: 23,562,226 V47E probably damaging Het
Kbtbd11 T A 8: 15,029,118 C572* probably null Het
Kynu A T 2: 43,634,989 N315Y probably benign Het
Map1lc3b G A 8: 121,596,690 E100K probably benign Het
Matn2 T A 15: 34,355,607 Q33L possibly damaging Het
Mettl8 T C 2: 70,976,075 probably null Het
Neto1 A T 18: 86,494,815 N312Y probably damaging Het
Nhsl1 A G 10: 18,524,505 D493G probably benign Het
Nup210l A G 3: 90,170,024 E889G possibly damaging Het
Olfr1153 G A 2: 87,896,657 V153I probably benign Het
Olfr1383 C A 11: 49,524,126 S134R possibly damaging Het
Olfr1402 A G 3: 97,410,891 F97L probably benign Het
Olfr209 A C 16: 59,361,585 M211R possibly damaging Het
Olfr296-ps1 A G 7: 86,561,873 Y47C unknown Het
Olfr420 C T 1: 174,159,175 T134I probably benign Het
Olfr967 A T 9: 39,750,520 M45L probably benign Het
Otx1 C A 11: 21,997,037 A91S probably damaging Het
Phc2 A G 4: 128,709,647 Y190C probably damaging Het
Platr25 T C 13: 62,672,997 T347A possibly damaging Het
Plec T C 15: 76,174,853 E3655G probably damaging Het
Plekhg3 A T 12: 76,576,845 Q954L probably benign Het
Pnpla1 G A 17: 28,881,368 G403E probably benign Het
Prdm4 G A 10: 85,907,830 T187I possibly damaging Het
Prg4 T C 1: 150,454,766 probably benign Het
Prpf18 G A 2: 4,633,447 R312W probably damaging Het
Rnf213 T A 11: 119,414,548 V535D probably damaging Het
Rtcb A T 10: 85,955,774 N39K probably damaging Het
Slc4a3 G A 1: 75,554,697 probably null Het
Szt2 A C 4: 118,374,290 probably benign Het
Tfap2e A T 4: 126,721,864 V259D probably damaging Het
Trav19 A G 14: 53,845,798 D110G probably damaging Het
Ttc17 A C 2: 94,358,755 C749W probably damaging Het
Ttc8 A G 12: 98,982,494 K490E possibly damaging Het
Ube4b A G 4: 149,387,133 S99P probably damaging Het
Ubqln3 C T 7: 104,142,178 R235H probably damaging Het
Vmn2r61 A T 7: 42,299,818 D554V probably damaging Het
Vmn2r70 A T 7: 85,558,986 V761E probably damaging Het
Vmn2r97 T C 17: 18,947,599 I705T possibly damaging Het
Wwox G A 8: 114,488,952 C155Y probably damaging Het
Zfp451 T C 1: 33,803,244 probably benign Het
Other mutations in Hmgcll1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02151:Hmgcll1 APN 9 76081438 missense probably benign 0.01
mephistopheles UTSW 9 76081449 missense probably benign 0.00
P0005:Hmgcll1 UTSW 9 76074759 missense possibly damaging 0.90
R1178:Hmgcll1 UTSW 9 76130331 missense probably damaging 1.00
R3907:Hmgcll1 UTSW 9 76072661 missense probably benign
R4161:Hmgcll1 UTSW 9 76074916 intron probably benign
R4843:Hmgcll1 UTSW 9 76072634 missense possibly damaging 0.79
R4896:Hmgcll1 UTSW 9 76056178 missense possibly damaging 0.73
R5614:Hmgcll1 UTSW 9 76081393 missense probably damaging 1.00
R5702:Hmgcll1 UTSW 9 76084390 missense possibly damaging 0.67
R6681:Hmgcll1 UTSW 9 76081449 missense probably benign 0.00
R7075:Hmgcll1 UTSW 9 76056552 missense possibly damaging 0.89
X0054:Hmgcll1 UTSW 9 76130404 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGTTGGTTCTCCAGGCTTGAC -3'
(R):5'- TGTGTAATGAGACTTCGACTTCAGC -3'

Sequencing Primer
(F):5'- CTTGACTCTAGCACCAAGTGAATGG -3'
(R):5'- GACTTCGACTTCAGCTGTTTTTCAAG -3'
Posted On2018-03-15