Incidental Mutation 'R6530:Irf6'
ID |
522239 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Irf6
|
Ensembl Gene |
ENSMUSG00000026638 |
Gene Name |
interferon regulatory factor 6 |
Synonyms |
E230028I05Rik |
MMRRC Submission |
044656-MU
|
Accession Numbers |
|
Essential gene? |
Probably essential
(E-score: 0.826)
|
Stock # |
R6530 (G1)
|
Quality Score |
225.009 |
Status
|
Validated
|
Chromosome |
1 |
Chromosomal Location |
192835419-192854331 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to T
at 192839657 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Methionine
at position 44
(T44M)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000075839
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000076521]
|
AlphaFold |
P97431 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000076521
AA Change: T44M
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000075839 Gene: ENSMUSG00000026638 AA Change: T44M
Domain | Start | End | E-Value | Type |
IRF
|
3 |
116 |
1.98e-59 |
SMART |
low complexity region
|
135 |
151 |
N/A |
INTRINSIC |
Blast:IRF
|
158 |
189 |
6e-8 |
BLAST |
IRF-3
|
223 |
407 |
3.92e-86 |
SMART |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138826
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000140066
|
Coding Region Coverage |
- 1x: 99.9%
- 3x: 99.5%
- 10x: 97.5%
- 20x: 92.1%
|
Validation Efficiency |
100% (36/36) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the interferon regulatory transcription factor (IRF) family. Family members share a highly-conserved N-terminal helix-turn-helix DNA-binding domain and a less conserved C-terminal protein-binding domain. The encoded protein may be a transcriptional activator. Mutations in this gene can cause van der Woude syndrome and popliteal pterygium syndrome. Mutations in this gene are also associated with non-syndromic orofacial cleft type 6. Alternate splicing results in multiple transcript variants.[provided by RefSeq, May 2011] PHENOTYPE: Mice with mutations of Irf6 display craniofacial, limb, and skin defects. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 36 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Acox3 |
T |
C |
5: 35,746,039 (GRCm39) |
L74P |
possibly damaging |
Het |
Adamtsl4 |
T |
C |
3: 95,588,364 (GRCm39) |
T575A |
probably benign |
Het |
Adck5 |
T |
G |
15: 76,478,047 (GRCm39) |
D224E |
probably benign |
Het |
Asic4 |
A |
G |
1: 75,448,979 (GRCm39) |
N376S |
probably damaging |
Het |
Atl3 |
T |
A |
19: 7,499,499 (GRCm39) |
D254E |
probably benign |
Het |
Cacnb2 |
G |
T |
2: 14,979,978 (GRCm39) |
A274S |
probably damaging |
Het |
Car2 |
T |
C |
3: 14,961,791 (GRCm39) |
V159A |
probably benign |
Het |
Ccdc138 |
G |
C |
10: 58,380,790 (GRCm39) |
G474R |
probably damaging |
Het |
Coq7 |
T |
C |
7: 118,124,558 (GRCm39) |
T203A |
probably benign |
Het |
Dnah12 |
T |
C |
14: 26,456,865 (GRCm39) |
I877T |
probably damaging |
Het |
Dnah7a |
C |
T |
1: 53,542,856 (GRCm39) |
R2438H |
probably benign |
Het |
Efhc1 |
T |
A |
1: 21,031,366 (GRCm39) |
|
probably null |
Het |
Fbn1 |
G |
A |
2: 125,231,190 (GRCm39) |
R459C |
probably damaging |
Het |
Fer1l4 |
A |
G |
2: 155,889,785 (GRCm39) |
|
probably null |
Het |
Gm5114 |
G |
A |
7: 39,057,514 (GRCm39) |
P702S |
probably damaging |
Het |
Inpp5f |
T |
A |
7: 128,265,802 (GRCm39) |
Y182* |
probably null |
Het |
Loxhd1 |
A |
G |
18: 77,499,847 (GRCm39) |
N87S |
probably benign |
Het |
Mtrf1 |
A |
T |
14: 79,640,331 (GRCm39) |
Q162L |
possibly damaging |
Het |
Myoz3 |
G |
T |
18: 60,712,592 (GRCm39) |
|
probably null |
Het |
Ncbp2 |
CGTCTGGATG |
CG |
16: 31,775,161 (GRCm39) |
|
probably null |
Het |
Nkd2 |
C |
T |
13: 73,970,809 (GRCm39) |
G258R |
probably null |
Het |
Or8k27 |
A |
C |
2: 86,275,826 (GRCm39) |
S167A |
probably benign |
Het |
Parg |
T |
C |
14: 31,931,156 (GRCm39) |
S176P |
probably damaging |
Het |
Prdm2 |
A |
C |
4: 142,860,617 (GRCm39) |
V891G |
probably benign |
Het |
Rasl10a |
T |
A |
11: 5,008,367 (GRCm39) |
I21N |
probably damaging |
Het |
Reg4 |
T |
C |
3: 98,132,148 (GRCm39) |
V20A |
probably benign |
Het |
Shprh |
T |
A |
10: 11,070,011 (GRCm39) |
S1462R |
probably benign |
Het |
Spmip1 |
G |
A |
6: 29,471,950 (GRCm39) |
|
probably null |
Het |
Sult1e1 |
T |
C |
5: 87,724,147 (GRCm39) |
E270G |
probably benign |
Het |
Trpm7 |
A |
C |
2: 126,654,631 (GRCm39) |
F1436V |
probably damaging |
Het |
Ttc33 |
A |
G |
15: 5,241,603 (GRCm39) |
|
probably null |
Het |
Ucp2 |
A |
T |
7: 100,147,430 (GRCm39) |
E161D |
probably benign |
Het |
Vmn2r79 |
T |
C |
7: 86,651,252 (GRCm39) |
F217S |
possibly damaging |
Het |
Wdr93 |
G |
A |
7: 79,405,741 (GRCm39) |
A207T |
probably damaging |
Het |
Zbed6 |
A |
G |
1: 133,586,939 (GRCm39) |
S133P |
probably damaging |
Het |
Zfp949 |
T |
C |
9: 88,449,340 (GRCm39) |
|
probably null |
Het |
|
Other mutations in Irf6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL03269:Irf6
|
APN |
1 |
192,844,906 (GRCm39) |
splice site |
probably benign |
|
R0068:Irf6
|
UTSW |
1 |
192,848,067 (GRCm39) |
unclassified |
probably benign |
|
R1317:Irf6
|
UTSW |
1 |
192,851,609 (GRCm39) |
missense |
probably damaging |
1.00 |
R1413:Irf6
|
UTSW |
1 |
192,851,613 (GRCm39) |
missense |
probably benign |
0.22 |
R1761:Irf6
|
UTSW |
1 |
192,851,609 (GRCm39) |
missense |
probably damaging |
1.00 |
R1856:Irf6
|
UTSW |
1 |
192,849,843 (GRCm39) |
missense |
probably benign |
0.32 |
R3712:Irf6
|
UTSW |
1 |
192,844,931 (GRCm39) |
missense |
probably benign |
0.00 |
R3941:Irf6
|
UTSW |
1 |
192,850,857 (GRCm39) |
missense |
probably benign |
0.17 |
R4717:Irf6
|
UTSW |
1 |
192,849,742 (GRCm39) |
splice site |
probably null |
|
R6461:Irf6
|
UTSW |
1 |
192,849,779 (GRCm39) |
missense |
probably damaging |
1.00 |
R6577:Irf6
|
UTSW |
1 |
192,851,662 (GRCm39) |
missense |
probably damaging |
1.00 |
R6883:Irf6
|
UTSW |
1 |
192,849,774 (GRCm39) |
missense |
probably damaging |
1.00 |
R7116:Irf6
|
UTSW |
1 |
192,849,905 (GRCm39) |
missense |
probably damaging |
1.00 |
R7698:Irf6
|
UTSW |
1 |
192,844,075 (GRCm39) |
missense |
probably damaging |
1.00 |
R7887:Irf6
|
UTSW |
1 |
192,850,040 (GRCm39) |
missense |
probably damaging |
1.00 |
R7894:Irf6
|
UTSW |
1 |
192,845,021 (GRCm39) |
missense |
probably benign |
0.22 |
R8934:Irf6
|
UTSW |
1 |
192,845,033 (GRCm39) |
missense |
probably benign |
0.31 |
|
Predicted Primers |
PCR Primer
(F):5'- GAAACTGTAGCCTCAGTACCTG -3'
(R):5'- AGAGGAATCACAATTTGGGCATC -3'
Sequencing Primer
(F):5'- AAAGTTCCCAGTGGCTAGCTC -3'
(R):5'- GGGCATCTTATCATATAGGTTCCGC -3'
|
Posted On |
2018-06-06 |