Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02008:Pcyox1'

183267

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Pcyox1

Ensembl Gene

ENSMUSG00000029998

Gene Name

prenylcysteine oxidase 1

Synonyms

1200015P13Rik, PCL1, Pcly

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

IGL02008

Quality Score

Status

Chromosome

Chromosomal Location

86362988-86374132 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 86369250 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 192 (V192A)

Ref Sequence

ENSEMBL: ENSMUSP00000032065 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032065] [ENSMUST00000153723] [ENSMUST00000204116]

AlphaFold

Q9CQF9

Predicted Effect

probably benign
Transcript: ENSMUST00000032065
AA Change: V192A

PolyPhen 2 Score 0.012 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000032065
Gene: ENSMUSG00000029998
AA Change: V192A

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:NAD_binding_8	39	106	8.2e-13	PFAM
Pfam:Amino_oxidase	44	346	7.1e-9	PFAM
Pfam:Prenylcys_lyase	128	501	8.1e-157	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000129650

Predicted Effect

unknown
Transcript: ENSMUST00000131500
AA Change: V25A

SMART Domains

Protein: ENSMUSP00000122602
Gene: ENSMUSG00000029998
AA Change: V25A

Domain	Start	End	E-Value	Type
Pfam:Prenylcys_lyase	1	73	6.1e-25	PFAM
Pfam:Prenylcys_lyase	69	197	7.1e-40	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000153723
AA Change: V123A

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000119449
Gene: ENSMUSG00000029998
AA Change: V123A

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:Prenylcys_lyase	59	181	5.5e-67	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000203960

Predicted Effect

probably benign
Transcript: ENSMUST00000204116

SMART Domains

Protein: ENSMUSP00000145474
Gene: ENSMUSG00000029998

Domain	Start	End	E-Value	Type
signal peptide	1	28	N/A	INTRINSIC
Pfam:NAD_binding_8	39	106	4.9e-12	PFAM
Pfam:Amino_oxidase	44	136	3.3e-7	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Prenylcysteine is released during the degradation of prenylated proteins. PCYOX1 catalyzes the degradation of prenylcysteine to yield free cysteines and a hydrophobic isoprenoid product (Tschantz et al., 1999 [PubMed 10585463]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Mice homozygous for a knock-out allele are viable, fertile and free of obvious pathology despite a striking accumulation of both farnesylcysteine and geranylgeranylcysteine in brain and liver. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	A	G	3: 121,969,750 (GRCm39)	T2252A	probably benign	Het
Abcc2	C	T	19: 43,810,189 (GRCm39)		probably benign	Het
Abcf1	T	C	17: 36,272,954 (GRCm39)	E231G	probably benign	Het
Astn2	T	C	4: 65,977,390 (GRCm39)	Y379C	probably damaging	Het
Atp8b1	G	T	18: 64,671,766 (GRCm39)		probably benign	Het
Atr	T	A	9: 95,763,473 (GRCm39)		probably benign	Het
Bdp1	A	G	13: 100,160,335 (GRCm39)	S2349P	possibly damaging	Het
Bmp2	T	C	2: 133,402,886 (GRCm39)	S146P	probably damaging	Het
Cacna1c	T	C	6: 118,692,885 (GRCm39)	S218G	probably null	Het
Cand2	T	C	6: 115,780,599 (GRCm39)	V1161A	probably damaging	Het
Clec16a	T	C	16: 10,398,824 (GRCm39)	V330A	probably damaging	Het
Cpsf1	A	T	15: 76,487,291 (GRCm39)	V161D	probably damaging	Het
Ctsh	A	G	9: 89,943,600 (GRCm39)	Y75C	probably damaging	Het
Cyp26c1	C	A	19: 37,677,371 (GRCm39)	L267M	probably damaging	Het
Cyp26c1	T	A	19: 37,677,372 (GRCm39)	L267Q	probably damaging	Het
Cyp2c50	G	A	19: 40,079,543 (GRCm39)	W212*	probably null	Het
Dnah5	T	A	15: 28,343,698 (GRCm39)	M2366K	probably damaging	Het
Ermp1	A	G	19: 29,590,320 (GRCm39)	M794T	probably damaging	Het
F11	G	T	8: 45,703,132 (GRCm39)	S186Y	probably damaging	Het
Fam184b	A	T	5: 45,690,165 (GRCm39)	F815I	possibly damaging	Het
Fezf2	T	C	14: 12,343,705 (GRCm38)	I347V	probably benign	Het
Fip1l1	C	T	5: 74,706,084 (GRCm39)	T114I	possibly damaging	Het
Gbp7	A	C	3: 142,252,211 (GRCm39)	D598A	probably benign	Het
Gm1110	T	A	9: 26,794,526 (GRCm39)	D500V	probably benign	Het
Gm3248	T	A	14: 5,943,928 (GRCm38)	M99L	probably benign	Het
Gpi-ps	A	T	8: 5,689,896 (GRCm39)		noncoding transcript	Het
Hspa9	G	A	18: 35,081,028 (GRCm39)	R218*	probably null	Het
Ikbip	G	A	10: 90,929,119 (GRCm39)		probably null	Het
Kcnb2	C	T	1: 15,781,033 (GRCm39)	T635M	probably benign	Het
Krtap29-1	T	A	11: 99,869,105 (GRCm39)	I259F	possibly damaging	Het
Lnpep	T	C	17: 17,791,219 (GRCm39)	T442A	probably benign	Het
Mgat1	T	A	11: 49,151,562 (GRCm39)	I15N	probably damaging	Het
Nlrp9c	A	T	7: 26,084,576 (GRCm39)	S334R	probably benign	Het
Notch2	A	T	3: 98,054,612 (GRCm39)	D2425V	probably damaging	Het
Ntn1	C	T	11: 68,104,089 (GRCm39)	V520M	probably damaging	Het
Or10d1b	A	G	9: 39,613,549 (GRCm39)	V172A	probably damaging	Het
Or4p18	T	A	2: 88,232,421 (GRCm39)	T286S	possibly damaging	Het
Or5d39	A	T	2: 87,979,922 (GRCm39)	V147E	probably damaging	Het
Or6c3b	T	A	10: 129,527,887 (GRCm39)	T8S	probably benign	Het
Or8g55	A	T	9: 39,784,781 (GRCm39)	D70V	probably damaging	Het
Or8k39	A	C	2: 86,563,521 (GRCm39)	I145R	possibly damaging	Het
Osr2	A	G	15: 35,302,138 (GRCm39)	H246R	probably damaging	Het
Papolg	T	C	11: 23,829,898 (GRCm39)	R224G	probably damaging	Het
Pax6	T	A	2: 105,522,623 (GRCm39)		probably null	Het
Phf1	C	T	17: 27,154,260 (GRCm39)	A159V	possibly damaging	Het
Ppfia4	G	A	1: 134,260,129 (GRCm39)	R45W	probably damaging	Het
Psmb9	T	A	17: 34,402,653 (GRCm39)	K109M	probably damaging	Het
Ptprt	T	A	2: 161,769,593 (GRCm39)	Y424F	probably benign	Het
Ptrh2	A	G	11: 86,580,592 (GRCm39)	I70V	probably benign	Het
Rnf213	G	A	11: 119,309,135 (GRCm39)		probably benign	Het
Rom1	T	A	19: 8,905,368 (GRCm39)	I271F	probably benign	Het
Satb2	T	A	1: 56,835,952 (GRCm39)	D731V	possibly damaging	Het
Serpinb7	G	T	1: 107,375,859 (GRCm39)	G159V	possibly damaging	Het
Slit1	T	C	19: 41,634,579 (GRCm39)	I393V	probably damaging	Het
Spata20	T	A	11: 94,374,289 (GRCm39)	D327V	probably damaging	Het
Spata31e3	G	A	13: 50,400,721 (GRCm39)	P535L	probably benign	Het
Spmap2l	A	T	5: 77,208,605 (GRCm39)	I378L	probably benign	Het
Tbc1d32	G	T	10: 56,027,871 (GRCm39)	Q744K	possibly damaging	Het
Tmem108	G	T	9: 103,366,439 (GRCm39)	N517K	possibly damaging	Het
Trp63	T	A	16: 25,681,211 (GRCm39)	N160K	probably damaging	Het
Ttll5	T	C	12: 85,980,385 (GRCm39)	S119P	probably damaging	Het
Ubqln3	T	A	7: 103,791,523 (GRCm39)	Q189L	probably damaging	Het
Vwa5a	G	A	9: 38,649,072 (GRCm39)	R638H	probably benign	Het
Wdr3	A	G	3: 100,058,298 (GRCm39)	S436P	probably damaging	Het
Zfp975	A	T	7: 42,312,215 (GRCm39)	C133S	probably damaging	Het
Zfp976	A	T	7: 42,263,656 (GRCm39)		probably benign	Het
Zmiz1	A	G	14: 25,657,303 (GRCm39)	M860V	probably damaging	Het
Zscan4d	T	C	7: 10,896,296 (GRCm39)	E358G	probably benign	Het

Other mutations in Pcyox1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01722:Pcyox1	APN	6	86,365,735 (GRCm39)	missense	probably damaging	1.00
IGL02655:Pcyox1	APN	6	86,366,326 (GRCm39)	missense	probably damaging	1.00
R0690:Pcyox1	UTSW	6	86,371,424 (GRCm39)	missense	probably damaging	1.00
R4631:Pcyox1	UTSW	6	86,366,212 (GRCm39)	missense	possibly damaging	0.96
R4631:Pcyox1	UTSW	6	86,366,125 (GRCm39)	missense	probably benign	0.00
R4976:Pcyox1	UTSW	6	86,365,708 (GRCm39)	missense	probably damaging	1.00
R5227:Pcyox1	UTSW	6	86,368,726 (GRCm39)	missense	probably damaging	0.98
R5288:Pcyox1	UTSW	6	86,369,336 (GRCm39)	splice site	probably null
R5408:Pcyox1	UTSW	6	86,369,280 (GRCm39)	missense	probably damaging	1.00
R5862:Pcyox1	UTSW	6	86,368,656 (GRCm39)	critical splice donor site	probably null
R6002:Pcyox1	UTSW	6	86,369,164 (GRCm39)	missense	probably benign	0.02
R6123:Pcyox1	UTSW	6	86,365,910 (GRCm39)	missense	possibly damaging	0.88
R6290:Pcyox1	UTSW	6	86,365,881 (GRCm39)	missense	probably benign	0.24
R6766:Pcyox1	UTSW	6	86,371,390 (GRCm39)	critical splice donor site	probably null
R7047:Pcyox1	UTSW	6	86,365,891 (GRCm39)	missense	probably damaging	1.00
R7066:Pcyox1	UTSW	6	86,371,478 (GRCm39)	missense	probably damaging	1.00
R7139:Pcyox1	UTSW	6	86,371,519 (GRCm39)	missense	possibly damaging	0.50
R7268:Pcyox1	UTSW	6	86,368,713 (GRCm39)	missense	possibly damaging	0.69
R7445:Pcyox1	UTSW	6	86,368,661 (GRCm39)	missense	possibly damaging	0.83
R7870:Pcyox1	UTSW	6	86,369,323 (GRCm39)	missense	probably damaging	1.00
R8050:Pcyox1	UTSW	6	86,366,128 (GRCm39)	missense	possibly damaging	0.88
R8253:Pcyox1	UTSW	6	86,366,044 (GRCm39)	missense	probably benign
R9296:Pcyox1	UTSW	6	86,368,735 (GRCm39)	missense	probably damaging	1.00
R9301:Pcyox1	UTSW	6	86,369,241 (GRCm39)	missense	possibly damaging	0.63

Posted On

2014-05-07