Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL02115:Pdpr'

280358

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Pdpr

Ensembl Gene

ENSMUSG00000033624

Gene Name

pyruvate dehydrogenase phosphatase regulatory subunit

Synonyms

4930402E16Rik

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.304) question?

Stock #

IGL02115

Quality Score

Status

Chromosome

Chromosomal Location

111821262-111863706 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 111830630 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Phenylalanine at position 107 (L107F)

Ref Sequence

ENSEMBL: ENSMUSP00000121325 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039333] [ENSMUST00000135302] [ENSMUST00000144377]

AlphaFold

Q7TSQ8

Predicted Effect

probably damaging
Transcript: ENSMUST00000039333
AA Change: L107F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000046639
Gene: ENSMUSG00000033624
AA Change: L107F

Domain	Start	End	E-Value	Type
low complexity region	20	35	N/A	INTRINSIC
Pfam:FAD_binding_2	43	235	8.3e-8	PFAM
Pfam:DAO	43	401	1.5e-58	PFAM
Pfam:FAO_M	404	459	1.2e-19	PFAM
Pfam:GCV_T	461	738	4.7e-71	PFAM
Pfam:GCV_T_C	746	854	1.4e-24	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000135302
AA Change: L107F

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000117570
Gene: ENSMUSG00000033624
AA Change: L107F

Domain	Start	End	E-Value	Type
low complexity region	20	35	N/A	INTRINSIC
Pfam:DAO	43	145	4.6e-25	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000144377
AA Change: L107F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000121325
Gene: ENSMUSG00000033624
AA Change: L107F

Domain	Start	End	E-Value	Type
low complexity region	20	35	N/A	INTRINSIC
Pfam:FAD_binding_2	43	236	2.4e-8	PFAM
Pfam:DAO	43	401	3.3e-72	PFAM
Pfam:GCV_T	522	667	1.4e-29	PFAM

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Pyruvate dehydrogenase complex (PDC) catalyzes the oxidative decarboxylation of pyruvate and links glycolysis to the tricarboxylic acid cycle and fatty acid synthesis. The dephosphorylation and reactivation of PDC is catalyzed by pyruvate dehydrogenase phosphatase (PDP). The dimeric PDP has a catalytic subunit and a regulatory subunit. This gene encodes the FAD-containing regulatory subunit of PDP. The encoded protein acts to decrease the sensitivity of the PDP catalytic subunit to magnesium ions. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jan 2017]

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933440M02Rik	A	T	7: 124,930,781 (GRCm39)		noncoding transcript	Het
Abca7	A	T	10: 79,833,913 (GRCm39)	N76Y	probably damaging	Het
Apob	A	G	12: 8,042,923 (GRCm39)	K755R	probably benign	Het
BC034090	A	T	1: 155,108,397 (GRCm39)		probably benign	Het
Brinp1	T	C	4: 68,680,635 (GRCm39)	T632A	probably benign	Het
Cdcp1	C	A	9: 123,014,462 (GRCm39)	C104F	probably damaging	Het
Cfap206	C	T	4: 34,722,623 (GRCm39)	V153I	possibly damaging	Het
Chd1l	A	T	3: 97,497,220 (GRCm39)		probably null	Het
Ckb	A	G	12: 111,636,415 (GRCm39)	F271L	possibly damaging	Het
Col6a3	T	A	1: 90,735,373 (GRCm39)	I759L	probably damaging	Het
Ddr2	A	T	1: 169,822,278 (GRCm39)	M390K	probably benign	Het
Dhx8	C	T	11: 101,643,214 (GRCm39)	P762L	probably damaging	Het
Dnah3	A	T	7: 119,628,277 (GRCm39)	V1449E	probably damaging	Het
Dzip3	T	C	16: 48,768,848 (GRCm39)	I629M	probably benign	Het
Ep300	T	C	15: 81,533,019 (GRCm39)	I1692T	unknown	Het
Ercc6	T	A	14: 32,298,950 (GRCm39)	L1446Q	probably damaging	Het
Gm10092	T	C	16: 35,957,993 (GRCm39)		noncoding transcript	Het
Gm6900	A	T	7: 10,390,503 (GRCm39)		noncoding transcript	Het
Gpr149	T	C	3: 62,502,336 (GRCm39)	T507A	probably benign	Het
Hmcn1	T	A	1: 150,506,479 (GRCm39)	D3776V	probably damaging	Het
Irgm2	A	G	11: 58,110,948 (GRCm39)	E225G	probably benign	Het
Kif14	T	C	1: 136,424,305 (GRCm39)		probably benign	Het
Klhl22	T	C	16: 17,594,459 (GRCm39)	V196A	probably damaging	Het
Lig4	T	C	8: 10,023,247 (GRCm39)	S178G	possibly damaging	Het
Lzts2	A	G	19: 45,014,809 (GRCm39)		probably benign	Het
Mcoln3	C	T	3: 145,843,056 (GRCm39)	S380L	probably damaging	Het
Med12l	A	T	3: 58,975,740 (GRCm39)	T223S	probably benign	Het
Mrpl54	A	G	10: 81,101,483 (GRCm39)		probably null	Het
Myo1c	A	T	11: 75,552,417 (GRCm39)	I397F	probably damaging	Het
Nbas	A	T	12: 13,367,693 (GRCm39)		probably benign	Het
Ncoa2	G	A	1: 13,223,041 (GRCm39)	H1195Y	probably damaging	Het
Nol3	A	G	8: 106,006,263 (GRCm39)	M171V	probably benign	Het
Or2l5	A	T	16: 19,333,853 (GRCm39)	C178S	probably damaging	Het
Or52s1	A	G	7: 102,861,681 (GRCm39)	T194A	probably damaging	Het
Ppfibp2	G	A	7: 107,338,525 (GRCm39)		probably benign	Het
Rusc2	T	C	4: 43,426,136 (GRCm39)		probably benign	Het
Sdk2	G	T	11: 113,725,639 (GRCm39)		probably benign	Het
Sema7a	T	C	9: 57,868,183 (GRCm39)	C539R	probably damaging	Het
Senp6	T	C	9: 80,029,208 (GRCm39)	C524R	probably damaging	Het
Setdb2	C	T	14: 59,639,764 (GRCm39)	R709Q	probably damaging	Het
Slc15a1	A	T	14: 121,718,073 (GRCm39)	Y269N	possibly damaging	Het
Synj2	T	A	17: 6,067,865 (GRCm39)	Y113N	probably damaging	Het
Tm6sf1	A	T	7: 81,525,551 (GRCm39)	Y172F	probably damaging	Het
Trpv4	T	C	5: 114,763,090 (GRCm39)	D773G	probably damaging	Het
Ttc39a	A	G	4: 109,283,491 (GRCm39)		probably benign	Het
Tut1	C	T	19: 8,942,676 (GRCm39)	R588W	probably damaging	Het
Unc79	A	T	12: 102,964,933 (GRCm39)	Y74F	probably damaging	Het
Usp53	A	T	3: 122,741,039 (GRCm39)	I737K	probably benign	Het
Vmn2r67	A	T	7: 84,800,787 (GRCm39)	M383K	probably damaging	Het
Zc3h4	A	G	7: 16,159,708 (GRCm39)	D426G	unknown	Het
Zfp622	A	G	15: 25,987,286 (GRCm39)	N308S	probably damaging	Het

Other mutations in Pdpr

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00155:Pdpr	APN	8	111,828,704 (GRCm39)	missense	possibly damaging	0.69
IGL01116:Pdpr	APN	8	111,839,342 (GRCm39)	missense	possibly damaging	0.84
IGL01353:Pdpr	APN	8	111,847,910 (GRCm39)	splice site	probably null
IGL01681:Pdpr	APN	8	111,859,568 (GRCm39)	missense	probably damaging	1.00
IGL01785:Pdpr	APN	8	111,856,288 (GRCm39)	missense	probably damaging	0.98
IGL02292:Pdpr	APN	8	111,852,312 (GRCm39)	missense	probably damaging	1.00
IGL02749:Pdpr	APN	8	111,844,722 (GRCm39)	missense	probably benign	0.01
IGL03296:Pdpr	APN	8	111,841,430 (GRCm39)	missense	probably damaging	1.00
R0730:Pdpr	UTSW	8	111,852,387 (GRCm39)	critical splice donor site	probably null
R1510:Pdpr	UTSW	8	111,851,107 (GRCm39)	splice site	probably benign
R1837:Pdpr	UTSW	8	111,861,366 (GRCm39)	missense	probably damaging	1.00
R1838:Pdpr	UTSW	8	111,861,366 (GRCm39)	missense	probably damaging	1.00
R2144:Pdpr	UTSW	8	111,844,668 (GRCm39)	missense	probably damaging	0.97
R4214:Pdpr	UTSW	8	111,856,212 (GRCm39)	intron	probably benign
R4812:Pdpr	UTSW	8	111,843,349 (GRCm39)	missense	probably benign	0.00
R4863:Pdpr	UTSW	8	111,828,583 (GRCm39)	missense	probably benign	0.01
R4998:Pdpr	UTSW	8	111,841,400 (GRCm39)	missense	probably damaging	1.00
R5579:Pdpr	UTSW	8	111,850,448 (GRCm39)	missense	probably damaging	1.00
R5665:Pdpr	UTSW	8	111,841,443 (GRCm39)	missense	possibly damaging	0.55
R5739:Pdpr	UTSW	8	111,861,252 (GRCm39)	missense	possibly damaging	0.78
R6675:Pdpr	UTSW	8	111,828,532 (GRCm39)	nonsense	probably null
R6785:Pdpr	UTSW	8	111,851,243 (GRCm39)	missense	probably benign	0.00
R6889:Pdpr	UTSW	8	111,851,245 (GRCm39)	critical splice donor site	probably null
R7397:Pdpr	UTSW	8	111,839,385 (GRCm39)	missense	possibly damaging	0.73
R7543:Pdpr	UTSW	8	111,859,520 (GRCm39)	missense	probably damaging	1.00
R7634:Pdpr	UTSW	8	111,852,317 (GRCm39)	missense	probably damaging	1.00
R8683:Pdpr	UTSW	8	111,850,492 (GRCm39)	missense	probably damaging	1.00
R8794:Pdpr	UTSW	8	111,852,240 (GRCm39)	missense	possibly damaging	0.53
R8833:Pdpr	UTSW	8	111,852,312 (GRCm39)	missense	probably damaging	1.00
R9283:Pdpr	UTSW	8	111,856,268 (GRCm39)	missense	possibly damaging	0.62
R9487:Pdpr	UTSW	8	111,852,925 (GRCm39)	missense	probably benign	0.00

Posted On

2015-04-16