Mutagenetix > Incidental Mutation

Incidental Mutation 'R5085:Methig1'

387395

Institutional Source

Beutler Lab

Gene Symbol

Methig1

Ensembl Gene

ENSMUSG00000093789

Gene Name

methyltransferase hypoxia inducible domain containing 1

Synonyms

Mettl7a2-Higd1c, UbiE-YGHL1, Mettl7a2Higd1c, UbiE2-Hig1-4, AB099516

MMRRC Submission

042674-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.129) question?

Stock #

R5085 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

100251081-100282316 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 100251130 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 14 (I14F)

Ref Sequence

ENSEMBL: ENSMUSP00000075098 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000075675] [ENSMUST00000088142] [ENSMUST00000175929] [ENSMUST00000176287]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000075675
AA Change: I14F

PolyPhen 2 Score 0.980 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000075098
Gene: ENSMUSG00000093789
AA Change: I14F

Domain	Start	End	E-Value	Type
transmembrane domain	10	32	N/A	INTRINSIC
Pfam:Ubie_methyltran	45	175	3.6e-7	PFAM
Pfam:Methyltransf_23	48	168	2.4e-14	PFAM
Pfam:Methyltransf_31	68	188	3e-12	PFAM
Pfam:Methyltransf_25	74	167	7.5e-11	PFAM
Pfam:Methyltransf_12	75	167	6.2e-14	PFAM
Pfam:Methyltransf_11	75	168	7e-20	PFAM
Pfam:HIG_1_N	192	244	1.2e-18	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000088142
AA Change: I14F

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000085467
Gene: ENSMUSG00000056487
AA Change: I14F

Domain	Start	End	E-Value	Type
Pfam:Ubie_methyltran	45	198	4.5e-11	PFAM
Pfam:Methyltransf_23	49	222	2.7e-19	PFAM
Pfam:Methyltransf_31	68	225	5.1e-16	PFAM
Pfam:Methyltransf_18	70	175	8e-11	PFAM
Pfam:Methyltransf_25	74	168	4e-12	PFAM
Pfam:Methyltransf_12	75	170	8.6e-16	PFAM
Pfam:Methyltransf_11	75	172	1.1e-23	PFAM
Pfam:Methyltransf_8	117	240	5.5e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000175929
AA Change: I14F

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000135002
Gene: ENSMUSG00000093789
AA Change: I14F

Domain	Start	End	E-Value	Type
transmembrane domain	10	32	N/A	INTRINSIC
Pfam:Ubie_methyltran	44	178	7e-8	PFAM
Pfam:Methyltransf_23	48	177	8.6e-15	PFAM
Pfam:Methyltransf_31	68	177	1.9e-12	PFAM
Pfam:Methyltransf_18	70	173	5e-9	PFAM
Pfam:Methyltransf_25	74	167	4.5e-11	PFAM
Pfam:Methyltransf_11	75	167	6e-21	PFAM
Pfam:Methyltransf_12	75	167	4.7e-14	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176287
AA Change: I14F

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)

SMART Domains

Protein: ENSMUSP00000135213
Gene: ENSMUSG00000056487
AA Change: I14F

Domain	Start	End	E-Value	Type
Pfam:Ubie_methyltran	45	197	3.3e-8	PFAM
Pfam:Methyltransf_23	49	222	2e-16	PFAM
Pfam:Methyltransf_31	68	225	9.8e-14	PFAM
Pfam:Methyltransf_18	70	175	3.1e-9	PFAM
Pfam:Methyltransf_25	74	167	1.1e-10	PFAM
Pfam:Methyltransf_12	75	167	1.1e-13	PFAM
Pfam:Methyltransf_11	75	172	1e-20	PFAM

Meta Mutation Damage Score

0.1121

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 97.0%
20x: 94.4%

Validation Efficiency

92% (69/75)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930562C15Rik	A	T	16: 4,653,837 (GRCm39)	K129*	probably null	Het
Adamts6	A	T	13: 104,443,751 (GRCm39)	D162V	probably damaging	Het
Alms1	C	A	6: 85,597,714 (GRCm39)	P1316T	possibly damaging	Het
AU040320	A	T	4: 126,722,664 (GRCm39)	N394I	possibly damaging	Het
Cacng8	T	C	7: 3,464,096 (GRCm39)	L416P	possibly damaging	Het
Ccdc136	T	A	6: 29,419,313 (GRCm39)	N944K	probably damaging	Het
Clcn1	C	T	6: 42,290,814 (GRCm39)	T896I	probably benign	Het
Col16a1	A	T	4: 129,947,964 (GRCm39)	Y228F	probably damaging	Het
Cyfip1	A	G	7: 55,548,083 (GRCm39)	D561G	probably benign	Het
Ddr1	T	A	17: 35,993,667 (GRCm39)		probably null	Het
Dedd2	A	T	7: 24,918,411 (GRCm39)	L48Q	probably damaging	Het
Dnase1l1	C	T	X: 73,320,644 (GRCm39)		probably null	Het
Dph3b-ps	A	G	13: 106,683,558 (GRCm39)		noncoding transcript	Het
Dppa3	T	C	6: 122,606,891 (GRCm39)	F127S	probably damaging	Het
Dpy19l4	C	T	4: 11,265,943 (GRCm39)		probably null	Het
Flrt3	T	C	2: 140,502,177 (GRCm39)	T484A	probably damaging	Het
Gldc	T	C	19: 30,128,936 (GRCm39)	E179G	probably damaging	Het
Gm14403	A	G	2: 177,200,282 (GRCm39)	E76G	probably benign	Het
Gm6421	G	A	13: 117,494,969 (GRCm39)		noncoding transcript	Het
Grk5	T	C	19: 61,065,122 (GRCm39)	V262A	probably damaging	Het
Grp	A	G	18: 66,013,230 (GRCm39)	Q132R	probably benign	Het
Hap1	A	G	11: 100,246,537 (GRCm39)	F123L	probably damaging	Het
Hrc	A	G	7: 44,986,445 (GRCm39)	D532G	probably damaging	Het
Igsf9b	C	A	9: 27,228,733 (GRCm39)	F164L	probably benign	Het
Irag1	G	T	7: 110,470,700 (GRCm39)	L672I	probably damaging	Het
Itgb4	C	T	11: 115,874,983 (GRCm39)	R447W	probably benign	Het
Kansl1	C	T	11: 104,315,168 (GRCm39)	R290Q	probably damaging	Het
Kifc2	T	A	15: 76,545,496 (GRCm39)	L81Q	probably damaging	Het
Klrc3	T	C	6: 129,616,538 (GRCm39)	R160G	probably damaging	Het
Mal	A	G	2: 127,482,193 (GRCm39)	M70T	probably benign	Het
Mep1a	T	G	17: 43,789,035 (GRCm39)	R580S	probably damaging	Het
Mtf1	T	C	4: 124,715,101 (GRCm39)	L242P	probably damaging	Het
Nfkb1	C	A	3: 135,309,568 (GRCm39)	A509S	probably benign	Het
Or2h2b-ps1	C	G	17: 37,480,858 (GRCm39)	S227T	probably benign	Het
Or2n1b	G	A	17: 38,460,003 (GRCm39)	D175N	probably damaging	Het
Or5ac24	A	T	16: 59,165,449 (GRCm39)	I205K	probably damaging	Het
Or7a36	G	T	10: 78,819,928 (GRCm39)	M101I	probably benign	Het
Or8k23	A	T	2: 86,186,318 (GRCm39)	M136K	probably damaging	Het
Pabpc2	A	T	18: 39,907,635 (GRCm39)	N300I	probably damaging	Het
Peg10	C	T	6: 4,755,864 (GRCm39)		probably benign	Het
Ppp1r3a	T	A	6: 14,719,603 (GRCm39)	D437V	probably damaging	Het
Prickle1	A	G	15: 93,398,783 (GRCm39)	S682P	probably damaging	Het
Prkab2	T	C	3: 97,580,308 (GRCm39)		probably benign	Het
Pus3	T	A	9: 35,476,932 (GRCm39)	L243Q	possibly damaging	Het
Relch	A	G	1: 105,605,905 (GRCm39)	S182G	probably damaging	Het
Rgs19	G	A	2: 181,331,336 (GRCm39)	T99M	possibly damaging	Het
Ripk2	A	G	4: 16,127,663 (GRCm39)	S360P	possibly damaging	Het
Rock1	A	G	18: 10,140,210 (GRCm39)	I127T	probably damaging	Het
Serpinb10	T	G	1: 107,469,947 (GRCm39)	M143R	probably damaging	Het
Sipa1l3	G	A	7: 29,048,000 (GRCm39)	S247F	probably damaging	Het
Skint6	T	A	4: 113,093,465 (GRCm39)	Q226L	probably damaging	Het
Slc6a19	T	C	13: 73,839,872 (GRCm39)	M137V	probably benign	Het
Supv3l1	A	T	10: 62,271,291 (GRCm39)	N415K	probably benign	Het
Tekt4	A	G	17: 25,692,749 (GRCm39)	R192G	probably damaging	Het
Trgv7	A	T	13: 19,362,598 (GRCm39)	K96*	probably null	Het
Tshz1	T	C	18: 84,032,053 (GRCm39)	N785S	probably benign	Het
Usb1	A	G	8: 96,070,679 (GRCm39)	T202A	probably damaging	Het
Utp18	A	T	11: 93,761,363 (GRCm39)	D348E	possibly damaging	Het
Vmn1r42	T	G	6: 89,821,598 (GRCm39)	I324L	probably benign	Het
Wnt8a	A	T	18: 34,678,656 (GRCm39)	R157*	probably null	Het
Ypel1	A	G	16: 16,902,472 (GRCm39)		probably null	Het
Zfp235	A	G	7: 23,836,546 (GRCm39)	K31E	probably damaging	Het
Zhx2	G	C	15: 57,686,089 (GRCm39)	W486S	probably damaging	Het

Other mutations in Methig1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
R0479:Methig1	UTSW	15	100,272,825 (GRCm39)	nonsense	probably null
R0729:Methig1	UTSW	15	100,272,870 (GRCm39)	missense	probably benign	0.13
R1727:Methig1	UTSW	15	100,251,130 (GRCm39)	missense	probably benign	0.38
R2037:Methig1	UTSW	15	100,251,467 (GRCm39)	missense	probably benign	0.02
R2281:Methig1	UTSW	15	100,251,241 (GRCm39)	missense	possibly damaging	0.86
R2443:Methig1	UTSW	15	100,251,092 (GRCm39)	start codon destroyed	probably null	1.00
R4820:Methig1	UTSW	15	100,251,416 (GRCm39)	missense	possibly damaging	0.71
R5408:Methig1	UTSW	15	100,281,635 (GRCm39)	missense	possibly damaging	0.91
R6258:Methig1	UTSW	15	100,251,422 (GRCm39)	missense	possibly damaging	0.77
R7750:Methig1	UTSW	15	100,251,412 (GRCm39)	missense	probably benign	0.01
R7921:Methig1	UTSW	15	100,251,251 (GRCm39)	missense	probably benign	0.00
R8469:Methig1	UTSW	15	100,251,130 (GRCm39)	missense	probably benign	0.38

Predicted Primers

PCR Primer
(F):5'- ACTCTTTCTTTGCCAGGGG -3'
(R):5'- TCCAGCAGAGTTAGCTTCCC -3'

Sequencing Primer
(F):5'- TGGGAGTCAGGGCATTACC -3'
(R):5'- AGAGTTAGCTTCCCCGAGG -3'

Posted On

2016-06-06