Mutagenetix > Incidental Mutation

Incidental Mutation 'R7927:Pramel25'

643371

Institutional Source

Beutler Lab

Gene Symbol

Pramel25

Ensembl Gene

ENSMUSG00000066031

Gene Name

PRAME like 25

Synonyms

MGC:91194, Gm13023

MMRRC Submission

045974-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.078) question?

Stock #

R7927 (G1)

Quality Score

999

Status

Validated

Chromosome

Chromosomal Location

143515922-143522145 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 143519536 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 99 (I99N)

Ref Sequence

ENSEMBL: ENSMUSP00000082232 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000085144] [ENSMUST00000105770] [ENSMUST00000149739]

AlphaFold

A2A8N2

Predicted Effect

probably benign
Transcript: ENSMUST00000085144
AA Change: I99N

PolyPhen 2 Score 0.289 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000082232
Gene: ENSMUSG00000066031
AA Change: I99N

Domain	Start	End	E-Value	Type
SCOP:d1a4ya_	222	420	3e-9	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000105770
AA Change: I99N

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

Predicted Effect

probably benign
Transcript: ENSMUST00000149739

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.9%
20x: 99.7%

Validation Efficiency

98% (56/57)

Allele List at MGI

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	A	G	4: 103,123,539 (GRCm39)	M111T	probably benign	Het
Adprhl1	C	T	8: 13,298,682 (GRCm39)	V83I	probably damaging	Het
Agrn	C	T	4: 156,257,266 (GRCm39)	G1188D	probably damaging	Het
Amz2	A	G	11: 109,319,884 (GRCm39)	K90R	probably damaging	Het
Arhgef4	G	T	1: 34,846,334 (GRCm39)	Q227H	probably damaging	Het
B4galt3	T	A	1: 171,099,342 (GRCm39)	C10*	probably null	Het
Banf2	T	A	2: 143,915,718 (GRCm39)	M53K	probably benign	Het
BC034090	A	T	1: 155,117,371 (GRCm39)	L249*	probably null	Het
Cftr	A	G	6: 18,267,970 (GRCm39)	D673G	possibly damaging	Het
Cntnap2	G	T	6: 47,072,621 (GRCm39)	C1063F	possibly damaging	Het
Cstpp1	T	A	2: 91,252,250 (GRCm39)	D37V	probably damaging	Het
Dnah3	A	G	7: 119,550,494 (GRCm39)	I296T	probably damaging	Het
Dpy19l2	A	G	9: 24,607,197 (GRCm39)	V88A	probably benign	Het
Fbln5	T	C	12: 101,784,647 (GRCm39)		probably benign	Het
Fbn1	T	C	2: 125,225,656 (GRCm39)	D532G	possibly damaging	Het
Fnta	G	A	8: 26,494,454 (GRCm39)	R258*	probably null	Het
G530012D18Rik	C	G	1: 85,504,935 (GRCm39)	D113E	unknown	Het
Gch1	G	A	14: 47,393,380 (GRCm39)	H201Y	probably damaging	Het
Grik2	A	T	10: 49,116,890 (GRCm39)	S624T	probably damaging	Het
Grm5	T	A	7: 87,685,382 (GRCm39)	S500T	probably benign	Het
Hmcn1	T	A	1: 150,485,526 (GRCm39)	I4359F	probably damaging	Het
Hrc	T	A	7: 44,985,477 (GRCm39)	H209Q	possibly damaging	Het
Hsd17b14	T	C	7: 45,215,395 (GRCm39)	M164T	probably damaging	Het
Hydin	T	C	8: 111,307,476 (GRCm39)	F3952L	possibly damaging	Het
Kti12	A	C	4: 108,705,443 (GRCm39)	E119A	probably benign	Het
Kti12	G	T	4: 108,705,444 (GRCm39)	E119D	probably benign	Het
Lig4	A	T	8: 10,023,629 (GRCm39)	H50Q	possibly damaging	Het
Lrp6	G	T	6: 134,497,513 (GRCm39)	R165S	probably damaging	Het
Muc4	A	G	16: 32,592,011 (GRCm39)	T958A		Het
Myo19	A	G	11: 84,791,046 (GRCm39)	E419G	probably damaging	Het
Ndufa5	A	G	6: 24,527,291 (GRCm39)	V16A	possibly damaging	Het
Or10a2	T	C	7: 106,673,496 (GRCm39)	F154L	probably benign	Het
Phf24	A	C	4: 42,934,774 (GRCm39)	T137P	probably damaging	Het
Pkp4	A	T	2: 59,142,098 (GRCm39)	N467I	probably damaging	Het
Rbm12b2	C	T	4: 12,095,417 (GRCm39)	R759C	possibly damaging	Het
Rftn1	G	T	17: 50,354,408 (GRCm39)	A318D	probably damaging	Het
Rnf34	T	A	5: 122,988,288 (GRCm39)		probably benign	Het
Rsf1	GGCGGCGGC	GGCGGCGGCAGCGGCGGC	7: 97,229,131 (GRCm39)		probably benign	Het
Scaf8	T	A	17: 3,209,495 (GRCm39)	S73T	unknown	Het
Scn4a	T	A	11: 106,233,209 (GRCm39)	E454D	probably damaging	Het
Serpina1e	A	G	12: 103,917,450 (GRCm39)	V73A	probably benign	Het
Sh3rf2	A	G	18: 42,244,487 (GRCm39)	T350A	probably benign	Het
Slc35a1	A	G	4: 34,669,021 (GRCm39)	V264A	probably damaging	Het
Slf2	A	G	19: 44,923,740 (GRCm39)	K185E	probably damaging	Het
Spmip8	T	A	8: 96,039,786 (GRCm39)	S68T	probably benign	Het
Spsb2	T	C	6: 124,786,336 (GRCm39)	F23S	probably benign	Het
Ssx2ip	T	G	3: 146,138,365 (GRCm39)	L404R	probably damaging	Het
Strn4	T	A	7: 16,560,556 (GRCm39)	L236Q	probably null	Het
Tcp10b	A	G	17: 13,288,579 (GRCm39)	T202A	probably benign	Het
Tdp1	G	T	12: 99,878,555 (GRCm39)	V448L	probably damaging	Het
Tecrl	T	C	5: 83,502,666 (GRCm39)	E61G	probably damaging	Het
Trim50	T	C	5: 135,382,465 (GRCm39)	F106L	probably benign	Het
Usp5	G	T	6: 124,801,192 (GRCm39)	F224L	probably benign	Het
Vmn2r45	C	A	7: 8,486,513 (GRCm39)	M258I	probably benign	Het
Zfp574	T	A	7: 24,779,572 (GRCm39)	V198E	probably benign	Het
Zmym4	A	G	4: 126,799,170 (GRCm39)	I722T	probably benign	Het

Other mutations in Pramel25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00905:Pramel25	APN	4	143,521,844 (GRCm39)	missense	probably benign	0.43
IGL01621:Pramel25	APN	4	143,520,502 (GRCm39)	missense	probably benign
IGL01777:Pramel25	APN	4	143,521,688 (GRCm39)	missense	possibly damaging	0.87
IGL02075:Pramel25	APN	4	143,521,602 (GRCm39)	missense	probably benign	0.05
IGL02098:Pramel25	APN	4	143,520,248 (GRCm39)	critical splice donor site	probably null
IGL02148:Pramel25	APN	4	143,519,304 (GRCm39)	missense	probably benign	0.25
IGL02355:Pramel25	APN	4	143,519,580 (GRCm39)	missense	probably damaging	1.00
IGL02362:Pramel25	APN	4	143,519,580 (GRCm39)	missense	probably damaging	1.00
IGL02828:Pramel25	APN	4	143,521,695 (GRCm39)	missense	possibly damaging	0.95
IGL03102:Pramel25	APN	4	143,520,116 (GRCm39)	missense	possibly damaging	0.84
IGL03234:Pramel25	APN	4	143,521,506 (GRCm39)	missense	probably benign	0.33
BB004:Pramel25	UTSW	4	143,519,536 (GRCm39)	missense	probably benign	0.29
BB014:Pramel25	UTSW	4	143,519,536 (GRCm39)	missense	probably benign	0.29
K3955:Pramel25	UTSW	4	143,521,710 (GRCm39)	missense	possibly damaging	0.79
R0054:Pramel25	UTSW	4	143,521,572 (GRCm39)	missense	probably damaging	1.00
R0637:Pramel25	UTSW	4	143,520,479 (GRCm39)	missense	probably benign	0.35
R1227:Pramel25	UTSW	4	143,520,134 (GRCm39)	missense	probably benign	0.00
R1370:Pramel25	UTSW	4	143,521,874 (GRCm39)	missense	possibly damaging	0.94
R1709:Pramel25	UTSW	4	143,520,116 (GRCm39)	missense	possibly damaging	0.84
R1982:Pramel25	UTSW	4	143,521,720 (GRCm39)	missense	probably benign	0.02
R2292:Pramel25	UTSW	4	143,520,446 (GRCm39)	missense	probably benign	0.08
R3087:Pramel25	UTSW	4	143,520,416 (GRCm39)	missense	probably benign	0.25
R4235:Pramel25	UTSW	4	143,521,344 (GRCm39)	missense	probably damaging	0.97
R4454:Pramel25	UTSW	4	143,519,394 (GRCm39)	missense	probably benign	0.00
R4504:Pramel25	UTSW	4	143,520,553 (GRCm39)	missense	probably benign	0.08
R4937:Pramel25	UTSW	4	143,520,407 (GRCm39)	missense	possibly damaging	0.46
R5041:Pramel25	UTSW	4	143,520,260 (GRCm39)	missense	probably benign	0.01
R5379:Pramel25	UTSW	4	143,521,493 (GRCm39)	missense	probably benign	0.00
R5399:Pramel25	UTSW	4	143,521,602 (GRCm39)	missense	probably benign	0.00
R5445:Pramel25	UTSW	4	143,521,707 (GRCm39)	missense	possibly damaging	0.50
R6059:Pramel25	UTSW	4	143,520,550 (GRCm39)	missense	possibly damaging	0.80
R6885:Pramel25	UTSW	4	143,520,103 (GRCm39)	missense	probably damaging	1.00
R7846:Pramel25	UTSW	4	143,520,563 (GRCm39)	missense	probably benign	0.02
R8285:Pramel25	UTSW	4	143,520,636 (GRCm39)	missense	probably benign	0.02
R8840:Pramel25	UTSW	4	143,521,638 (GRCm39)	missense	probably damaging	1.00
R8849:Pramel25	UTSW	4	143,521,596 (GRCm39)	missense	probably damaging	0.99
R8921:Pramel25	UTSW	4	143,519,322 (GRCm39)	nonsense	probably null
R9128:Pramel25	UTSW	4	143,520,178 (GRCm39)	missense	probably benign	0.00
R9232:Pramel25	UTSW	4	143,520,263 (GRCm39)	missense	probably benign	0.01
R9643:Pramel25	UTSW	4	143,521,855 (GRCm39)	nonsense	probably null
R9674:Pramel25	UTSW	4	143,520,162 (GRCm39)	missense	probably benign	0.02
Z1177:Pramel25	UTSW	4	143,521,551 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGAGGCCTTGGCCATTTCTG -3'
(R):5'- TGAGACTGAGCTTAAACCGCTAC -3'

Sequencing Primer
(F):5'- TGCTCTCACGGACCTGC -3'
(R):5'- CCCAGTGAAGAACAATCTTGAATGTG -3'

Posted On

2020-08-07