Incidental Mutation 'R1186:Senp2'
| ID |
102195 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Senp2
|
| Ensembl Gene |
ENSMUSG00000022855 |
| Gene Name |
SUMO/sentrin specific peptidase 2 |
| Synonyms |
4930538C18Rik, 2310007L05Rik |
| MMRRC Submission |
039258-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R1186 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
16 |
| Chromosomal Location |
21828234-21868019 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 21830254 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Serine to Proline
at position 38
(S38P)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000156326
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000023561]
[ENSMUST00000231632]
[ENSMUST00000231724]
[ENSMUST00000232534]
[ENSMUST00000232679]
|
| AlphaFold |
Q91ZX6 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000023561
AA Change: S38P
PolyPhen 2
Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000023561
Gene: ENSMUSG00000022855
AA Change: S38P
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
23 |
40 |
N/A |
INTRINSIC |
|
low complexity region
|
101 |
118 |
N/A |
INTRINSIC |
|
low complexity region
|
325 |
340 |
N/A |
INTRINSIC |
|
Pfam:Peptidase_C48
|
408 |
587 |
1.5e-40 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000231408
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231632
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000231724
AA Change: S38P
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000231798
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000232534
AA Change: S29P
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000232679
AA Change: S38P
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| Meta Mutation Damage Score |
0.0657 |
| Coding Region Coverage |
- 1x: 99.5%
- 3x: 98.5%
- 10x: 95.7%
- 20x: 90.1%
|
| Validation Efficiency |
97% (69/71) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] SUMO1 (UBL1; MIM 601912) is a small ubiquitin-like protein that can be covalently conjugated to other proteins. SENP2 is one of a group of enzymes that process newly synthesized SUMO1 into the conjugatable form and catalyze the deconjugation of SUMO1-containing species.[supplied by OMIM, Apr 2004]
PHENOTYPE: Homozygous null mice are embryonic lethal due to placental defects resulting from abnormal trophoblast maturation. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 68 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 1700020N01Rik |
G |
A |
10: 21,497,551 (GRCm39) |
R64Q |
probably benign |
Het |
| 9530068E07Rik |
G |
A |
11: 52,293,905 (GRCm39) |
V49I |
probably benign |
Het |
| A2m |
T |
C |
6: 121,638,493 (GRCm39) |
S902P |
probably benign |
Het |
| Aatf |
A |
T |
11: 84,361,375 (GRCm39) |
|
probably benign |
Het |
| Adamtsl1 |
A |
G |
4: 86,306,746 (GRCm39) |
T1395A |
probably benign |
Het |
| Alpk2 |
T |
C |
18: 65,427,412 (GRCm39) |
|
probably null |
Het |
| Ank3 |
G |
T |
10: 69,703,290 (GRCm39) |
A308S |
probably damaging |
Het |
| Arap1 |
A |
G |
7: 101,053,476 (GRCm39) |
|
probably benign |
Het |
| Bltp1 |
T |
C |
3: 37,050,461 (GRCm39) |
|
probably benign |
Het |
| C4b |
T |
C |
17: 34,955,283 (GRCm39) |
D769G |
possibly damaging |
Het |
| Cep350 |
A |
G |
1: 155,751,122 (GRCm39) |
S2017P |
probably damaging |
Het |
| Cfap54 |
T |
A |
10: 92,711,856 (GRCm39) |
I2704F |
unknown |
Het |
| Crip2 |
G |
A |
12: 113,108,579 (GRCm39) |
|
probably benign |
Het |
| Cyp4f14 |
T |
C |
17: 33,135,760 (GRCm39) |
I34V |
probably benign |
Het |
| Dcstamp |
A |
G |
15: 39,618,025 (GRCm39) |
|
probably null |
Het |
| Ddx5 |
T |
C |
11: 106,674,805 (GRCm39) |
|
probably null |
Het |
| Dnah2 |
A |
T |
11: 69,406,526 (GRCm39) |
L572Q |
probably damaging |
Het |
| Espl1 |
G |
A |
15: 102,212,474 (GRCm39) |
A527T |
probably benign |
Het |
| Fam83d |
A |
G |
2: 158,627,094 (GRCm39) |
D261G |
probably damaging |
Het |
| Fbxo34 |
T |
C |
14: 47,768,043 (GRCm39) |
F468L |
probably damaging |
Het |
| Gabarapl1 |
A |
T |
6: 129,510,368 (GRCm39) |
|
probably benign |
Het |
| Galnt17 |
G |
T |
5: 131,140,580 (GRCm39) |
T179K |
probably damaging |
Het |
| Gm6899 |
C |
T |
11: 26,543,685 (GRCm39) |
|
probably benign |
Het |
| Helz2 |
T |
A |
2: 180,872,921 (GRCm39) |
R2433W |
probably damaging |
Het |
| Hivep3 |
T |
C |
4: 119,671,920 (GRCm39) |
|
probably benign |
Het |
| Hsh2d |
G |
A |
8: 72,954,304 (GRCm39) |
D229N |
probably benign |
Het |
| Ica1 |
A |
G |
6: 8,672,326 (GRCm39) |
L225P |
probably damaging |
Het |
| Inpp5f |
T |
C |
7: 128,296,307 (GRCm39) |
I195T |
probably benign |
Het |
| Isyna1 |
C |
A |
8: 71,047,851 (GRCm39) |
N115K |
probably benign |
Het |
| Ly6g6e |
T |
C |
17: 35,296,984 (GRCm39) |
F75S |
probably benign |
Het |
| Ly96 |
A |
G |
1: 16,771,118 (GRCm39) |
D101G |
possibly damaging |
Het |
| Mapk9 |
A |
G |
11: 49,769,096 (GRCm39) |
T243A |
probably damaging |
Het |
| Mcc |
A |
G |
18: 44,892,470 (GRCm39) |
V48A |
probably benign |
Het |
| Mcpt2 |
C |
T |
14: 56,281,402 (GRCm39) |
|
probably benign |
Het |
| Med24 |
T |
C |
11: 98,608,583 (GRCm39) |
|
probably benign |
Het |
| Mtbp |
G |
A |
15: 55,428,067 (GRCm39) |
G162S |
probably null |
Het |
| Mtfr2 |
G |
A |
10: 20,228,598 (GRCm39) |
C48Y |
probably benign |
Het |
| Naip2 |
AGGG |
AGG |
13: 100,298,545 (GRCm39) |
|
probably null |
Het |
| Naip2 |
C |
T |
13: 100,298,489 (GRCm39) |
A516T |
possibly damaging |
Het |
| Ncoa4-ps |
A |
C |
12: 119,225,206 (GRCm39) |
|
noncoding transcript |
Het |
| Nup107 |
A |
C |
10: 117,613,051 (GRCm39) |
Y292* |
probably null |
Het |
| Nwd2 |
C |
T |
5: 63,807,367 (GRCm39) |
|
probably benign |
Het |
| Nxpe4 |
A |
C |
9: 48,304,692 (GRCm39) |
N260H |
probably benign |
Het |
| Ofcc1 |
C |
T |
13: 40,362,305 (GRCm39) |
G206R |
probably benign |
Het |
| Or6z7 |
T |
C |
7: 6,483,541 (GRCm39) |
I205V |
probably benign |
Het |
| Or8b42 |
T |
C |
9: 38,342,397 (GRCm39) |
V273A |
possibly damaging |
Het |
| Or8b47 |
T |
C |
9: 38,435,453 (GRCm39) |
S142P |
probably damaging |
Het |
| Or8k37 |
A |
T |
2: 86,469,807 (GRCm39) |
L82M |
probably damaging |
Het |
| P2rx7 |
T |
C |
5: 122,808,514 (GRCm39) |
Y299H |
probably damaging |
Het |
| Per3 |
T |
A |
4: 151,110,595 (GRCm39) |
E401V |
probably damaging |
Het |
| Rbm34 |
C |
A |
8: 127,692,197 (GRCm39) |
E182* |
probably null |
Het |
| Sdk2 |
C |
T |
11: 113,729,472 (GRCm39) |
|
silent |
Het |
| Slc36a2 |
A |
T |
11: 55,055,057 (GRCm39) |
|
probably null |
Het |
| Spred1 |
A |
T |
2: 117,008,178 (GRCm39) |
R361S |
possibly damaging |
Het |
| Spry2 |
A |
G |
14: 106,130,341 (GRCm39) |
C282R |
probably damaging |
Het |
| Srp54b |
T |
C |
12: 55,302,313 (GRCm39) |
|
probably benign |
Het |
| Taar8c |
G |
C |
10: 23,977,463 (GRCm39) |
Y116* |
probably null |
Het |
| Tchh |
C |
G |
3: 93,355,353 (GRCm39) |
R1598G |
unknown |
Het |
| Tex15 |
A |
G |
8: 34,061,661 (GRCm39) |
M364V |
probably benign |
Het |
| Ttbk1 |
T |
C |
17: 46,778,057 (GRCm39) |
R662G |
probably damaging |
Het |
| Ttc5 |
G |
A |
14: 51,004,683 (GRCm39) |
Q374* |
probably null |
Het |
| Usp46 |
C |
T |
5: 74,162,783 (GRCm39) |
A312T |
probably benign |
Het |
| Vmn1r176 |
A |
T |
7: 23,535,051 (GRCm39) |
L34Q |
probably damaging |
Het |
| Vmn1r178 |
A |
T |
7: 23,593,317 (GRCm39) |
R122* |
probably null |
Het |
| Vmn2r6 |
T |
A |
3: 64,472,488 (GRCm39) |
M78L |
probably benign |
Het |
| Zfp407 |
A |
T |
18: 84,227,573 (GRCm39) |
I2012N |
probably benign |
Het |
| Zfp980 |
G |
A |
4: 145,428,653 (GRCm39) |
G461S |
probably benign |
Het |
| Zfyve26 |
G |
A |
12: 79,310,723 (GRCm39) |
L161F |
probably damaging |
Het |
|
| Other mutations in Senp2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00788:Senp2
|
APN |
16 |
21,837,114 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01562:Senp2
|
APN |
16 |
21,828,437 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01757:Senp2
|
APN |
16 |
21,828,414 (GRCm39) |
missense |
probably benign |
0.13 |
|
IGL02593:Senp2
|
APN |
16 |
21,863,021 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02896:Senp2
|
APN |
16 |
21,837,118 (GRCm39) |
nonsense |
probably null |
|
|
IGL03219:Senp2
|
APN |
16 |
21,833,014 (GRCm39) |
splice site |
probably benign |
|
|
IGL03244:Senp2
|
APN |
16 |
21,859,329 (GRCm39) |
missense |
probably damaging |
0.97 |
|
Jessie
|
UTSW |
16 |
21,837,114 (GRCm39) |
missense |
probably damaging |
1.00 |
|
wrangler
|
UTSW |
16 |
21,847,344 (GRCm39) |
critical splice donor site |
probably null |
|
|
wrestler
|
UTSW |
16 |
21,857,372 (GRCm39) |
missense |
probably damaging |
1.00 |
|
PIT1430001:Senp2
|
UTSW |
16 |
21,832,864 (GRCm39) |
splice site |
probably benign |
|
|
R0410:Senp2
|
UTSW |
16 |
21,828,444 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0511:Senp2
|
UTSW |
16 |
21,855,320 (GRCm39) |
missense |
probably benign |
0.01 |
|
R1689:Senp2
|
UTSW |
16 |
21,845,416 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R1723:Senp2
|
UTSW |
16 |
21,846,792 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1776:Senp2
|
UTSW |
16 |
21,861,810 (GRCm39) |
splice site |
probably benign |
|
|
R2056:Senp2
|
UTSW |
16 |
21,832,949 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2058:Senp2
|
UTSW |
16 |
21,832,949 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2371:Senp2
|
UTSW |
16 |
21,837,125 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R3838:Senp2
|
UTSW |
16 |
21,828,485 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R3839:Senp2
|
UTSW |
16 |
21,828,485 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4001:Senp2
|
UTSW |
16 |
21,847,318 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4190:Senp2
|
UTSW |
16 |
21,865,417 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4191:Senp2
|
UTSW |
16 |
21,865,417 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4193:Senp2
|
UTSW |
16 |
21,865,417 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4231:Senp2
|
UTSW |
16 |
21,830,304 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4435:Senp2
|
UTSW |
16 |
21,832,991 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R4847:Senp2
|
UTSW |
16 |
21,857,386 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R5207:Senp2
|
UTSW |
16 |
21,860,130 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
R5509:Senp2
|
UTSW |
16 |
21,859,272 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6036:Senp2
|
UTSW |
16 |
21,847,308 (GRCm39) |
nonsense |
probably null |
|
|
R6036:Senp2
|
UTSW |
16 |
21,847,308 (GRCm39) |
nonsense |
probably null |
|
|
R6475:Senp2
|
UTSW |
16 |
21,842,550 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6517:Senp2
|
UTSW |
16 |
21,845,474 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R6923:Senp2
|
UTSW |
16 |
21,830,326 (GRCm39) |
intron |
probably benign |
|
|
R7287:Senp2
|
UTSW |
16 |
21,837,114 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7747:Senp2
|
UTSW |
16 |
21,857,372 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7884:Senp2
|
UTSW |
16 |
21,832,981 (GRCm39) |
missense |
probably benign |
0.39 |
|
R8037:Senp2
|
UTSW |
16 |
21,832,888 (GRCm39) |
nonsense |
probably null |
|
|
R8393:Senp2
|
UTSW |
16 |
21,850,864 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8805:Senp2
|
UTSW |
16 |
21,846,789 (GRCm39) |
missense |
probably benign |
|
|
R9216:Senp2
|
UTSW |
16 |
21,847,344 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9426:Senp2
|
UTSW |
16 |
21,828,491 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R9479:Senp2
|
UTSW |
16 |
21,842,398 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9592:Senp2
|
UTSW |
16 |
21,845,435 (GRCm39) |
missense |
possibly damaging |
0.54 |
|
Z1177:Senp2
|
UTSW |
16 |
21,828,455 (GRCm39) |
missense |
probably benign |
0.44 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCCAGTGTCCCAAAACCAAATGATG -3'
(R):5'- GGGTTCACTCAGCCAGATGAATCAG -3'
Sequencing Primer
(F):5'- TTTACGACTACATGGGGCAC -3'
(R):5'- taggaaagacaatggcatagagaaag -3'
|
| Posted On |
2014-01-15 |
Incidental Mutation