Mutagenetix > Incidental Mutation

Incidental Mutation 'R2029:Zfyve16'

221042

Institutional Source

Beutler Lab

Gene Symbol

Zfyve16

Ensembl Gene

ENSMUSG00000021706

Gene Name

zinc finger, FYVE domain containing 16

Synonyms

B130024H06Rik

MMRRC Submission

040036-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.200) question?

Stock #

R2029 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

92624257-92667318 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 92640985 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 1253 (D1253G)

Ref Sequence

ENSEMBL: ENSMUSP00000022217 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000022217]

AlphaFold

Q80U44

Predicted Effect

probably damaging
Transcript: ENSMUST00000022217
AA Change: D1253G

PolyPhen 2 Score 0.983 (Sensitivity: 0.75; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000022217
Gene: ENSMUSG00000021706
AA Change: D1253G

Domain	Start	End	E-Value	Type
low complexity region	163	175	N/A	INTRINSIC
low complexity region	367	381	N/A	INTRINSIC
low complexity region	438	449	N/A	INTRINSIC
low complexity region	455	484	N/A	INTRINSIC
low complexity region	569	580	N/A	INTRINSIC
FYVE	727	794	7.25e-31	SMART
low complexity region	821	838	N/A	INTRINSIC
low complexity region	1002	1014	N/A	INTRINSIC
low complexity region	1050	1063	N/A	INTRINSIC
Pfam:DUF3480	1155	1503	3.3e-169	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136135

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156586

Meta Mutation Damage Score

0.1818

Coding Region Coverage

1x: 99.2%
3x: 98.5%
10x: 96.8%
20x: 93.8%

Validation Efficiency

98% (97/99)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes an endosomal protein that belongs to the FYVE zinc finger family of proteins. The encoded protein is thought to regulate membrane trafficking in the endosome. This protein functions as a scaffold protein in the transforming growth factor-beta signaling pathway and is involved in positive and negative feedback regulation of the bone morphogenetic protein signaling pathway. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

Allele List at MGI

Other mutations in this stock

Total: 100 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam18	C	G	8: 25,140,893 (GRCm39)	G286A	probably damaging	Het
Adcy1	G	A	11: 7,089,142 (GRCm39)	A519T	probably benign	Het
Anxa2	T	A	9: 69,371,762 (GRCm39)	S2T	possibly damaging	Het
Ap3m1	G	A	14: 21,089,217 (GRCm39)	S261L	possibly damaging	Het
Baz2b	A	T	2: 59,743,067 (GRCm39)		probably benign	Het
Brdt	T	A	5: 107,507,090 (GRCm39)	S497T	probably benign	Het
Cdh11	A	G	8: 103,406,404 (GRCm39)	F23S	probably benign	Het
Cdh16	A	C	8: 105,344,434 (GRCm39)	L540R	probably damaging	Het
Ces5a	A	T	8: 94,261,205 (GRCm39)	L74Q	probably damaging	Het
Cfap69	A	G	5: 5,654,306 (GRCm39)	S543P	probably damaging	Het
Cfap74	T	C	4: 155,526,538 (GRCm39)	I763T	possibly damaging	Het
Cma1	T	A	14: 56,181,191 (GRCm39)	R58S	possibly damaging	Het
Csmd3	C	T	15: 47,701,975 (GRCm39)	D1599N	probably damaging	Het
Cyld	A	G	8: 89,471,940 (GRCm39)	K857R	probably benign	Het
Cyp3a16	T	C	5: 145,388,667 (GRCm39)	D270G	probably damaging	Het
D1Pas1	T	C	1: 186,700,286 (GRCm39)	S72P	possibly damaging	Het
Ddx3y	T	C	Y: 1,266,389 (GRCm39)	E331G	probably benign	Het
Degs1l	T	A	1: 180,882,496 (GRCm39)	I86K	probably benign	Het
Dis3l2	T	C	1: 86,782,189 (GRCm39)		probably benign	Het
Dop1a	G	T	9: 86,403,418 (GRCm39)	W1539C	probably damaging	Het
Dop1b	A	G	16: 93,566,323 (GRCm39)	K917E	probably benign	Het
Ecpas	G	A	4: 58,844,165 (GRCm39)	R534*	probably null	Het
Efcab3	T	C	11: 104,990,851 (GRCm39)	I5462T	probably damaging	Het
Eif1ad15	A	T	12: 88,288,191 (GRCm39)	S21T	unknown	Het
Epo	A	G	5: 137,483,447 (GRCm39)		probably benign	Het
Figla	T	A	6: 85,997,624 (GRCm39)		probably benign	Het
Flvcr1	T	C	1: 190,753,353 (GRCm39)	D273G	probably benign	Het
Fryl	T	A	5: 73,179,465 (GRCm39)	R304*	probably null	Het
Gcm1	T	G	9: 77,972,326 (GRCm39)	D422E	possibly damaging	Het
Get3	A	T	8: 85,746,403 (GRCm39)	Y148*	probably null	Het
Ggt6	A	G	11: 72,328,367 (GRCm39)	D251G	possibly damaging	Het
Git2	A	G	5: 114,904,511 (GRCm39)		probably null	Het
Gm18856	A	T	13: 14,139,376 (GRCm39)		probably benign	Het
Gm20939	T	A	17: 95,183,252 (GRCm39)		probably benign	Het
Gpr176	A	G	2: 118,109,913 (GRCm39)	Y449H	probably benign	Het
H2-Eb1	A	G	17: 34,533,366 (GRCm39)	E196G	probably damaging	Het
H2-M10.6	A	G	17: 37,124,799 (GRCm39)	T239A	possibly damaging	Het
Haus5	T	C	7: 30,358,825 (GRCm39)	N237S	possibly damaging	Het
Hectd3	T	C	4: 116,857,882 (GRCm39)	M605T	probably damaging	Het
Hps3	T	C	3: 20,084,691 (GRCm39)	I166V	probably benign	Het
Ighv5-21	A	T	12: 114,286,434 (GRCm39)		probably benign	Het
Kdm6b	C	T	11: 69,294,418 (GRCm39)	G1218D	unknown	Het
Klhl30	A	G	1: 91,285,636 (GRCm39)		probably null	Het
Kmt2a	A	T	9: 44,729,747 (GRCm39)	S3523R	probably benign	Het
Lnpep	A	T	17: 17,788,661 (GRCm39)	N481K	probably damaging	Het
Lrp1b	T	C	2: 41,231,861 (GRCm39)	H1203R	probably benign	Het
Lrrc8a	C	T	2: 30,146,661 (GRCm39)	R492W	probably damaging	Het
Magel2	T	A	7: 62,030,342 (GRCm39)	V1082D	unknown	Het
Memo1	A	C	17: 74,552,049 (GRCm39)	H82Q	probably null	Het
Myh13	A	T	11: 67,252,115 (GRCm39)	T1408S	probably benign	Het
Myh2	A	T	11: 67,085,451 (GRCm39)	N1792Y	possibly damaging	Het
Myo1e	A	T	9: 70,275,969 (GRCm39)	N728I	possibly damaging	Het
Myo1e	T	C	9: 70,285,997 (GRCm39)		probably benign	Het
Myo5c	T	C	9: 75,196,337 (GRCm39)		probably benign	Het
Or11l3	T	A	11: 58,516,319 (GRCm39)	L184F	probably damaging	Het
Or1e19	A	G	11: 73,316,188 (GRCm39)	V207A	probably benign	Het
Or2d2b	T	C	7: 106,705,643 (GRCm39)	I142V	probably benign	Het
Or4c11c	T	A	2: 88,661,749 (GRCm39)	M96K	possibly damaging	Het
Or51g1	T	A	7: 102,633,478 (GRCm39)	T298S	probably damaging	Het
Or52e3	T	C	7: 102,868,967 (GRCm39)	F14S	probably damaging	Het
Parp2	C	T	14: 51,047,543 (GRCm39)	A18V	probably benign	Het
Peli1	T	A	11: 21,098,110 (GRCm39)	C282S	probably damaging	Het
Phf8-ps	G	T	17: 33,286,598 (GRCm39)	S68*	probably null	Het
Piezo2	T	C	18: 63,252,006 (GRCm39)	M404V	possibly damaging	Het
Pkn1	T	A	8: 84,404,592 (GRCm39)	Q496L	possibly damaging	Het
Pla2r1	A	T	2: 60,262,317 (GRCm39)	F1093L	probably damaging	Het
Ppp2r3d	A	G	9: 101,022,680 (GRCm39)	V323A	probably damaging	Het
Pramel16	T	A	4: 143,676,453 (GRCm39)	Y217F	probably benign	Het
Prg2	C	T	2: 84,812,342 (GRCm39)		probably benign	Het
Ptprb	G	A	10: 116,182,958 (GRCm39)	G1545S	probably benign	Het
Rbm19	A	G	5: 120,258,307 (GRCm39)	D174G	possibly damaging	Het
Rhbdf2	T	A	11: 116,491,974 (GRCm39)	T526S	probably damaging	Het
Rpusd4	A	G	9: 35,179,310 (GRCm39)	N42S	probably benign	Het
Ryr3	T	A	2: 112,477,361 (GRCm39)	Q4455L	possibly damaging	Het
Sema4a	G	T	3: 88,358,668 (GRCm39)	H30Q	probably damaging	Het
Skint1	G	A	4: 111,878,653 (GRCm39)		probably null	Het
Slc1a3	A	G	15: 8,675,153 (GRCm39)	V284A	probably benign	Het
Slc30a9	A	T	5: 67,497,318 (GRCm39)	K288*	probably null	Het
Slc36a1	G	T	11: 55,119,164 (GRCm39)	A380S	probably benign	Het
Slc47a1	G	A	11: 61,268,833 (GRCm39)		probably benign	Het
Snx19	A	T	9: 30,340,296 (GRCm39)	E478V	probably benign	Het
Spag6	T	C	2: 18,738,916 (GRCm39)		probably benign	Het
Stag1	A	T	9: 100,668,740 (GRCm39)	T223S	probably damaging	Het
Terb1	A	T	8: 105,224,732 (GRCm39)		probably benign	Het
Terf1	A	G	1: 15,876,170 (GRCm39)	D90G	possibly damaging	Het
Tex15	A	G	8: 34,061,302 (GRCm39)	D518G	probably damaging	Het
Tmem174	T	A	13: 98,773,546 (GRCm39)	M95L	possibly damaging	Het
Tnnt3	GTCCAGGCATCTC	GTC	7: 142,066,364 (GRCm39)		probably benign	Het
Usp28	A	G	9: 48,896,803 (GRCm39)	D8G	probably benign	Het
Vmn2r105	T	C	17: 20,444,840 (GRCm39)	T551A	probably damaging	Het
Vmn2r107	A	G	17: 20,595,549 (GRCm39)	I701V	probably benign	Het
Vmn2r13	A	C	5: 109,339,943 (GRCm39)	F11V	probably benign	Het
Vmn2r85	G	C	10: 130,261,443 (GRCm39)	S298*	probably null	Het
Wdr6	C	G	9: 108,452,554 (GRCm39)	W443S	probably damaging	Het
Wipi1	A	G	11: 109,474,016 (GRCm39)	V210A	probably damaging	Het
Zfp317	A	G	9: 19,556,532 (GRCm39)	T47A	probably benign	Het
Zfp61	T	C	7: 23,991,714 (GRCm39)	T146A	probably benign	Het
Zfp964	A	G	8: 70,116,567 (GRCm39)	E389G	unknown	Het
Zpld2	T	C	4: 133,929,669 (GRCm39)	K212R	possibly damaging	Het
Zswim7	G	A	11: 62,158,299 (GRCm39)		probably benign	Het

Other mutations in Zfyve16

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00481:Zfyve16	APN	13	92,653,046 (GRCm39)	missense	possibly damaging	0.56
IGL00737:Zfyve16	APN	13	92,657,626 (GRCm39)	nonsense	probably null
IGL00741:Zfyve16	APN	13	92,660,761 (GRCm39)	missense	probably damaging	1.00
IGL00753:Zfyve16	APN	13	92,657,626 (GRCm39)	nonsense	probably null
IGL01123:Zfyve16	APN	13	92,629,030 (GRCm39)	missense	probably damaging	1.00
IGL01149:Zfyve16	APN	13	92,644,791 (GRCm39)	missense	probably damaging	1.00
IGL01414:Zfyve16	APN	13	92,658,704 (GRCm39)	missense	probably benign	0.04
IGL01771:Zfyve16	APN	13	92,658,680 (GRCm39)	missense	probably benign	0.38
IGL01889:Zfyve16	APN	13	92,659,077 (GRCm39)	missense	possibly damaging	0.87
IGL01928:Zfyve16	APN	13	92,641,006 (GRCm39)	missense	probably damaging	0.97
IGL02524:Zfyve16	APN	13	92,641,022 (GRCm39)	missense	probably benign	0.19
IGL03102:Zfyve16	APN	13	92,648,325 (GRCm39)	missense	possibly damaging	0.57
IGL03192:Zfyve16	APN	13	92,657,748 (GRCm39)	missense	possibly damaging	0.94
PIT4151001:Zfyve16	UTSW	13	92,657,712 (GRCm39)	missense	probably damaging	0.99
R0321:Zfyve16	UTSW	13	92,629,042 (GRCm39)	missense	probably damaging	0.99
R0548:Zfyve16	UTSW	13	92,631,452 (GRCm39)	missense	probably benign	0.00
R0555:Zfyve16	UTSW	13	92,653,028 (GRCm39)	splice site	probably benign
R0616:Zfyve16	UTSW	13	92,657,637 (GRCm39)	missense	probably damaging	1.00
R0727:Zfyve16	UTSW	13	92,630,386 (GRCm39)	missense	possibly damaging	0.81
R0730:Zfyve16	UTSW	13	92,657,985 (GRCm39)	missense	probably damaging	0.98
R1221:Zfyve16	UTSW	13	92,644,813 (GRCm39)	missense	possibly damaging	0.87
R1297:Zfyve16	UTSW	13	92,658,840 (GRCm39)	missense	probably benign	0.41
R1597:Zfyve16	UTSW	13	92,644,755 (GRCm39)	missense	probably benign	0.02
R1635:Zfyve16	UTSW	13	92,645,528 (GRCm39)	missense	probably damaging	1.00
R1803:Zfyve16	UTSW	13	92,640,593 (GRCm39)	missense	probably damaging	1.00
R1840:Zfyve16	UTSW	13	92,648,033 (GRCm39)	missense	possibly damaging	0.79
R1962:Zfyve16	UTSW	13	92,659,252 (GRCm39)	missense	possibly damaging	0.74
R2083:Zfyve16	UTSW	13	92,660,770 (GRCm39)	missense	probably damaging	1.00
R2122:Zfyve16	UTSW	13	92,655,991 (GRCm39)	nonsense	probably null
R2173:Zfyve16	UTSW	13	92,631,596 (GRCm39)	missense	probably damaging	0.99
R3822:Zfyve16	UTSW	13	92,657,769 (GRCm39)	missense	probably damaging	1.00
R3857:Zfyve16	UTSW	13	92,631,479 (GRCm39)	missense	probably damaging	1.00
R4043:Zfyve16	UTSW	13	92,650,271 (GRCm39)	splice site	probably null
R4056:Zfyve16	UTSW	13	92,641,057 (GRCm39)	missense	probably damaging	1.00
R4495:Zfyve16	UTSW	13	92,625,075 (GRCm39)	missense	probably benign	0.25
R4518:Zfyve16	UTSW	13	92,657,820 (GRCm39)	missense	possibly damaging	0.86
R4835:Zfyve16	UTSW	13	92,658,693 (GRCm39)	missense	probably benign	0.18
R4862:Zfyve16	UTSW	13	92,644,764 (GRCm39)	missense	probably damaging	1.00
R4962:Zfyve16	UTSW	13	92,650,402 (GRCm39)	missense	probably damaging	1.00
R5117:Zfyve16	UTSW	13	92,642,197 (GRCm39)	missense	possibly damaging	0.95
R5344:Zfyve16	UTSW	13	92,658,096 (GRCm39)	missense	possibly damaging	0.79
R5358:Zfyve16	UTSW	13	92,644,771 (GRCm39)	missense	probably benign	0.04
R5407:Zfyve16	UTSW	13	92,636,792 (GRCm39)	missense	probably damaging	1.00
R5410:Zfyve16	UTSW	13	92,657,739 (GRCm39)	missense	probably benign	0.08
R5704:Zfyve16	UTSW	13	92,640,979 (GRCm39)	splice site	probably null
R5731:Zfyve16	UTSW	13	92,644,701 (GRCm39)	missense	probably benign	0.11
R5808:Zfyve16	UTSW	13	92,631,563 (GRCm39)	nonsense	probably null
R5828:Zfyve16	UTSW	13	92,650,410 (GRCm39)	missense	probably damaging	1.00
R5928:Zfyve16	UTSW	13	92,658,625 (GRCm39)	missense	probably benign	0.01
R6044:Zfyve16	UTSW	13	92,659,174 (GRCm39)	nonsense	probably null
R6141:Zfyve16	UTSW	13	92,648,105 (GRCm39)	missense	probably benign	0.00
R6538:Zfyve16	UTSW	13	92,641,024 (GRCm39)	missense	probably damaging	1.00
R6594:Zfyve16	UTSW	13	92,650,326 (GRCm39)	missense	probably benign	0.23
R6767:Zfyve16	UTSW	13	92,644,707 (GRCm39)	missense	probably damaging	1.00
R6942:Zfyve16	UTSW	13	92,653,139 (GRCm39)	missense	probably benign
R7011:Zfyve16	UTSW	13	92,658,495 (GRCm39)	missense	probably benign	0.00
R7381:Zfyve16	UTSW	13	92,657,654 (GRCm39)	missense	probably damaging	1.00
R7531:Zfyve16	UTSW	13	92,659,473 (GRCm39)	missense	probably damaging	1.00
R7617:Zfyve16	UTSW	13	92,641,070 (GRCm39)	missense	probably damaging	1.00
R7831:Zfyve16	UTSW	13	92,658,836 (GRCm39)	missense	probably benign	0.05
R8127:Zfyve16	UTSW	13	92,642,185 (GRCm39)	missense	probably damaging	1.00
R8382:Zfyve16	UTSW	13	92,650,328 (GRCm39)	missense	probably benign
R8467:Zfyve16	UTSW	13	92,644,790 (GRCm39)	missense	probably damaging	1.00
R8765:Zfyve16	UTSW	13	92,658,055 (GRCm39)	missense	probably benign	0.15
R8792:Zfyve16	UTSW	13	92,659,669 (GRCm39)	missense	probably benign	0.08
R9112:Zfyve16	UTSW	13	92,659,563 (GRCm39)	missense	possibly damaging	0.75
R9169:Zfyve16	UTSW	13	92,657,871 (GRCm39)	missense	probably damaging	1.00
R9599:Zfyve16	UTSW	13	92,636,763 (GRCm39)	missense	probably damaging	1.00
R9608:Zfyve16	UTSW	13	92,636,788 (GRCm39)	missense	probably damaging	1.00
R9636:Zfyve16	UTSW	13	92,631,456 (GRCm39)	missense	probably benign	0.17
R9669:Zfyve16	UTSW	13	92,656,007 (GRCm39)	missense	probably damaging	0.99
R9685:Zfyve16	UTSW	13	92,659,311 (GRCm39)	missense	possibly damaging	0.75
Z1176:Zfyve16	UTSW	13	92,629,171 (GRCm39)	missense	possibly damaging	0.95
Z1177:Zfyve16	UTSW	13	92,659,504 (GRCm39)	missense	possibly damaging	0.87

Predicted Primers

PCR Primer
(F):5'- TTTAACCAAGATGGACAGACAGAC -3'
(R):5'- AAGCTGGGACTGTCTTTCTG -3'

Sequencing Primer
(F):5'- GCTGGCAGGAGGTAAAAATCTC -3'
(R):5'- AGCACTTTGATAGGACTGTCAG -3'

Posted On

2014-08-25