Incidental Mutation 'IGL02153:Sgca'
| ID |
282124 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Sgca
|
| Ensembl Gene |
ENSMUSG00000001508 |
| Gene Name |
sarcoglycan, alpha (dystrophin-associated glycoprotein) |
| Synonyms |
50DAG, adhalin, Asg |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.182)
|
| Stock # |
IGL02153
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
11 |
| Chromosomal Location |
94853617-94867153 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 94854110 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Threonine to Alanine
at position 120
(T120A)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000117637
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000038928]
[ENSMUST00000100551]
[ENSMUST00000103162]
[ENSMUST00000139855]
[ENSMUST00000166320]
|
| AlphaFold |
P82350 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000038928
|
| SMART Domains |
Protein: ENSMUSP00000039866
Gene: ENSMUSG00000038994
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Linker_histone
|
35 |
106 |
5.9e-11 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000100551
AA Change: T367A
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000098118
Gene: ENSMUSG00000001508
AA Change: T367A
| Domain | Start | End | E-Value | Type |
|---|
|
CADG
|
27 |
131 |
2.14e-10 |
SMART |
|
low complexity region
|
287 |
309 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000103162
AA Change: T367A
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000099451
Gene: ENSMUSG00000001508
AA Change: T367A
| Domain | Start | End | E-Value | Type |
|---|
|
CADG
|
27 |
131 |
2.14e-10 |
SMART |
|
low complexity region
|
287 |
309 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000139855
AA Change: T120A
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000117637
Gene: ENSMUSG00000001508
AA Change: T120A
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Sarcoglycan_2
|
1 |
140 |
2.1e-53 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000158779
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000166320
AA Change: T367A
PolyPhen 2
Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
|
| SMART Domains |
Protein: ENSMUSP00000130617
Gene: ENSMUSG00000001508
AA Change: T367A
| Domain | Start | End | E-Value | Type |
|---|
|
CADG
|
27 |
131 |
2.14e-10 |
SMART |
|
low complexity region
|
287 |
309 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: This gene encodes a member of the sarcoglycan alpha/epsilon family of transmembrane proteins. The encoded protein is part of the dystrophin-glycoprotein complex which links the extracellular matrix to the cytoskeleton in muscle fibers. Disruption of this gene results in progressive muscular dystrophy and is associated with the development of embryonal rhabdomysarcoma. [provided by RefSeq, Dec 2012]
PHENOTYPE: Homozygous mutation of this gene results in muscle abnormalities, with decreased skeletal muscle force and stiffness and muscular dystrophy. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 45 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 6820408C15Rik |
T |
C |
2: 152,283,161 (GRCm39) |
I275T |
probably benign |
Het |
| Chd9 |
A |
T |
8: 91,683,122 (GRCm39) |
K521* |
probably null |
Het |
| Csn3 |
A |
T |
5: 88,077,956 (GRCm39) |
N154I |
possibly damaging |
Het |
| Dock2 |
A |
G |
11: 34,180,670 (GRCm39) |
S1716P |
probably benign |
Het |
| Dock7 |
A |
T |
4: 98,846,304 (GRCm39) |
S18T |
probably benign |
Het |
| Esrra |
G |
A |
19: 6,891,190 (GRCm39) |
T190I |
probably benign |
Het |
| F13b |
T |
C |
1: 139,444,115 (GRCm39) |
I483T |
probably damaging |
Het |
| Foxb1 |
T |
A |
9: 69,666,985 (GRCm39) |
M182L |
probably benign |
Het |
| Fsip2 |
T |
C |
2: 82,809,065 (GRCm39) |
F1795L |
probably benign |
Het |
| Gkn2 |
G |
A |
6: 87,350,390 (GRCm39) |
|
probably null |
Het |
| Gm8439 |
G |
A |
4: 120,466,787 (GRCm39) |
A93T |
unknown |
Het |
| Ift22 |
T |
C |
5: 136,940,550 (GRCm39) |
S72P |
probably benign |
Het |
| Kcnmb2 |
A |
G |
3: 32,232,993 (GRCm39) |
K24E |
probably damaging |
Het |
| Kcnq3 |
C |
A |
15: 65,897,040 (GRCm39) |
V287L |
probably damaging |
Het |
| Lrriq1 |
T |
A |
10: 103,006,340 (GRCm39) |
M1262L |
probably benign |
Het |
| Mb21d2 |
A |
G |
16: 28,748,240 (GRCm39) |
I59T |
probably benign |
Het |
| Mogat2 |
A |
T |
7: 98,872,761 (GRCm39) |
M141K |
possibly damaging |
Het |
| Mtdh |
C |
T |
15: 34,131,396 (GRCm39) |
L409F |
possibly damaging |
Het |
| Muc5ac |
C |
T |
7: 141,372,537 (GRCm39) |
Q2724* |
probably null |
Het |
| Myo15a |
T |
G |
11: 60,389,223 (GRCm39) |
L2040R |
probably damaging |
Het |
| Nodal |
C |
T |
10: 61,260,324 (GRCm39) |
T325I |
probably damaging |
Het |
| Pappa |
A |
T |
4: 65,215,674 (GRCm39) |
T1194S |
probably damaging |
Het |
| Pcdhb13 |
A |
C |
18: 37,576,738 (GRCm39) |
D372A |
probably damaging |
Het |
| Phf14 |
T |
A |
6: 11,934,015 (GRCm39) |
N292K |
probably damaging |
Het |
| Pigr |
T |
A |
1: 130,776,793 (GRCm39) |
|
probably null |
Het |
| Plcb1 |
T |
C |
2: 135,229,773 (GRCm39) |
I1131T |
probably benign |
Het |
| Plch1 |
T |
A |
3: 63,688,772 (GRCm39) |
D132V |
probably damaging |
Het |
| Plxnb2 |
C |
A |
15: 89,050,016 (GRCm39) |
E502* |
probably null |
Het |
| Prox2 |
T |
C |
12: 85,134,703 (GRCm39) |
N526S |
probably damaging |
Het |
| Rdm1 |
T |
A |
11: 101,519,280 (GRCm39) |
|
probably null |
Het |
| Rxfp1 |
C |
T |
3: 79,567,427 (GRCm39) |
E308K |
probably benign |
Het |
| Sh3tc1 |
G |
A |
5: 35,860,696 (GRCm39) |
R1054W |
probably damaging |
Het |
| Smarcal1 |
C |
T |
1: 72,672,214 (GRCm39) |
|
probably benign |
Het |
| Spata45 |
T |
A |
1: 190,771,958 (GRCm39) |
M60K |
probably benign |
Het |
| St8sia6 |
T |
C |
2: 13,661,716 (GRCm39) |
M372V |
probably damaging |
Het |
| Tas2r126 |
T |
G |
6: 42,411,598 (GRCm39) |
S44A |
probably benign |
Het |
| Tcea3 |
T |
A |
4: 136,000,945 (GRCm39) |
|
probably benign |
Het |
| Thoc2l |
A |
G |
5: 104,668,949 (GRCm39) |
E1157G |
probably benign |
Het |
| Tln1 |
T |
C |
4: 43,546,857 (GRCm39) |
I840V |
possibly damaging |
Het |
| Ttn |
T |
C |
2: 76,728,685 (GRCm39) |
|
probably benign |
Het |
| Ubr4 |
T |
A |
4: 139,187,471 (GRCm39) |
Y3846* |
probably null |
Het |
| Usp47 |
G |
A |
7: 111,703,256 (GRCm39) |
D1171N |
probably benign |
Het |
| Vmn2r114 |
G |
A |
17: 23,510,782 (GRCm39) |
T566I |
probably benign |
Het |
| Wdr35 |
G |
A |
12: 9,058,535 (GRCm39) |
R575Q |
probably null |
Het |
| Xkr5 |
A |
T |
8: 18,983,683 (GRCm39) |
C454S |
probably benign |
Het |
|
| Other mutations in Sgca |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01123:Sgca
|
APN |
11 |
94,863,113 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01479:Sgca
|
APN |
11 |
94,854,204 (GRCm39) |
nonsense |
probably null |
|
|
IGL02713:Sgca
|
APN |
11 |
94,862,131 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02928:Sgca
|
APN |
11 |
94,863,129 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03185:Sgca
|
APN |
11 |
94,861,610 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0602:Sgca
|
UTSW |
11 |
94,854,061 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R0834:Sgca
|
UTSW |
11 |
94,861,512 (GRCm39) |
nonsense |
probably null |
|
|
R1547:Sgca
|
UTSW |
11 |
94,860,259 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1703:Sgca
|
UTSW |
11 |
94,860,217 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4110:Sgca
|
UTSW |
11 |
94,863,396 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R4112:Sgca
|
UTSW |
11 |
94,863,396 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R4796:Sgca
|
UTSW |
11 |
94,861,553 (GRCm39) |
splice site |
probably null |
|
|
R5301:Sgca
|
UTSW |
11 |
94,854,157 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6301:Sgca
|
UTSW |
11 |
94,863,393 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6347:Sgca
|
UTSW |
11 |
94,862,854 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6510:Sgca
|
UTSW |
11 |
94,854,058 (GRCm39) |
missense |
probably benign |
0.36 |
|
R7110:Sgca
|
UTSW |
11 |
94,854,227 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R7121:Sgca
|
UTSW |
11 |
94,860,373 (GRCm39) |
missense |
possibly damaging |
0.64 |
|
R7197:Sgca
|
UTSW |
11 |
94,864,014 (GRCm39) |
splice site |
probably null |
|
|
R7496:Sgca
|
UTSW |
11 |
94,862,070 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R8383:Sgca
|
UTSW |
11 |
94,863,068 (GRCm39) |
missense |
probably benign |
0.00 |
|
Z1177:Sgca
|
UTSW |
11 |
94,860,340 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
Z1177:Sgca
|
UTSW |
11 |
94,860,339 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
| Posted On |
2015-04-16 |
Incidental Mutation